Array 1 93828-96601 **** Predicted by CRISPRDetect 2.4 *** >NZ_MNCH01000034.1 Erwinia sp. OLSSP12 NODE_2_length_198083_cov_32.6339_ID_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 93828 29 100.0 32 ............................. CAGTGCCGGGAGGTTGGACGGGAGCCACGGGA 93889 29 96.6 32 ............................C AGTGCCGGGAGGTTGGACGGGAGCCACGGGAC 93950 29 100.0 32 ............................. GAAATTACCATGAGCACAGTAACCGCTGAAAC 94011 29 100.0 32 ............................. CAAAGGGGGGATTTGAAGGGAAAGGGGCAGAA 94072 29 100.0 32 ............................. ATGAACAAGCTACGTTATTTCCGGAGAAAGGT 94133 29 100.0 32 ............................. AATGACCATGCATCCACTGAACTGCATACATA 94194 29 100.0 32 ............................. GCGCGGAACGCTGTTACGAAACGGCAGCGTGG 94255 29 100.0 32 ............................. GTTTTATCCAACGAGGTAAATTTACTGAATAA 94316 29 100.0 32 ............................. CCAATCGAAGAACATTTACACCATCCATGTAT 94377 29 100.0 32 ............................. CTGTATTCAGAGTCGGATCTGGTTCACTTCGC 94438 29 100.0 32 ............................. ATTTTAGAACCCTTTGTGTACCCGGGAACTTG 94499 29 100.0 32 ............................. GGGATGCTGCGCAAGATTGAGGCGCTGCTGGC 94560 29 100.0 32 ............................. GTTATTTTCGAGTTTACTGATAGCGAGGCTGA 94621 29 100.0 32 ............................. GCGAGAACGAGGTGATCGCCGCCCCGCGCGGC 94682 29 100.0 32 ............................. GTGTCCTGACGCCTGAACATTTAATCAAACCC 94743 29 100.0 32 ............................. CGCCCGGCACGGGCTTTTACCATGCCGCAGAC 94804 29 100.0 32 ............................. CCACGATTACTTTTGACTATGAGCATAAATTA 94865 29 100.0 32 ............................. CAACGCCGGTTTTCACGTCACGATTAATCAGC 94926 29 100.0 32 ............................. ACTGTGGCATATATTTTGATGCCGCAGCGACC 94987 29 96.6 32 ............................T TGCACTTCCGCCAGGCGTGTCTGCACAATATC 95048 29 100.0 32 ............................. TCGATGCGGCGATGGCTTACATGAAAAACTCG 95109 29 100.0 32 ............................. GTGGAAATTGAAAAATGACAACTAAACGCGGC 95170 29 100.0 32 ............................. ATTTTTGCTGATGATTTGCACACTCAATATCT 95231 29 100.0 32 ............................. CGGCCTGCGTCAATGTGCTGGGCGTAAGGGGT 95292 29 100.0 32 ............................. TATTAACTATGGAATATGCAAAAACACGCAAA 95353 29 100.0 32 ............................. GCACGATCAACACCGTTAAATCCATTGATGAA 95414 29 100.0 32 ............................. CTACACCATGTTATCAAGTCTGCAGTAGGTGC 95475 29 100.0 32 ............................. ATAATCGGCTAACCAAAATTAATTCAAGGGCT 95536 29 100.0 32 ............................. CGGCTTGGAGATGACAAATGAACAGCAAACCG 95597 29 100.0 32 ............................. AAAACCACAGTAGACGAACGTACCCCACTCCG 95658 29 100.0 32 ............................. TTAACCCACTGATTAAAATGCAAGAAGTAGGC 95719 29 100.0 32 ............................. CGTGAACTCGTGATTGTACTTTGACAGCGCTG 95780 29 100.0 32 ............................. TATCTCGCTCAGCCAGCAAAACCACAGTAGAC 95841 29 100.0 32 ............................. AAAGCTGTACAGGCCAACTGAGCAGCAGAATG 95902 29 100.0 32 ............................. ACCCGAATAAGCTGTTTCCGGGAACAACGTGG 95963 29 100.0 32 ............................. GGCTGGGTATGGATTTAAAGAGCGCGCCTCCT 96024 29 100.0 32 ............................. CTGTTTACCGAGCAGCACCATGGTGCGCACGT 96085 29 100.0 32 ............................. GTTGTGCCTGTGCCGGTAACTGTTGCCGACTG 96146 29 100.0 32 ............................. CTACGTCAGAGATGATGGGCAACTGATAGCCA 96207 29 100.0 32 ............................. AAAATAATCGGCTATTTTTTCTCCGGCAGCCC 96268 29 100.0 32 ............................. GTGTAGACCTATTTGCAGCAATATTCGCTCTT 96329 29 96.6 32 ............................T ACTTCCGTTTTTTCGTCCTCATTTGAGGATAC 96390 29 100.0 32 ............................. CTTCATTCTGTGTTGCTGAACACTCATAGAGT 96451 29 100.0 32 ............................. CCCGCAAAACAGTGCGTTTTGTCGGTAACTAT 96512 29 79.3 32 .....T....TC....C..AA........ AAAAAATCCACTAAATCTTTTCTCAACTTTAC 96573 29 82.8 0 .C.C.......G.A.A............. | ========== ====== ====== ====== ============================= ================================ ================== 46 29 99.0 32 GTGTTCCCCACATGCGTGGGGATAAACCG # Left flank : CTTATAGAAGACGTGCTTGCTGCCGGTGGTATTTCGCCGCCGCCGCCGCCCGCCGATATTCAACCGGTAGCCATTCCCGAACCGTTACCTTTTGGCGATAGTGGCCACCGGAGCTAATCAATATGAGCATGGTAACCGTTGTCACCGAAAATGTACCGCCGCGTTTACGTGGCCGTCTTGCTATCTGGCTTCTGGAGGTCCGGGCGGGAGTGTATGTGGGTGATTTATCGCGGCGAACCCGGGAAATGATATGGCAACAGATAACTCAGTTAGCCGAAAGCGGTAACGTTGTTATGGTCTGGGCGACAAATAATGAGTCGGGATTTGATTTTCAGACGCTGGGTGAAAACCGTCGCCTGCCGGTGGACATGGATGGATTGCGATTAGTCTCTTTTCACCCTGTTAATTATCAATGAGTTAGCGCTCTTTAACAAACTGAAAAAATCGGTAGAATAGCAGGGTGATGTAAAACTCTTTATATTCAATGGTATAAGCTAAGA # Right flank : GTTGGATAATCACCTGCCGTGGTGGTGATGAAAGGCATGTCCTGGTAACGAGGACATAAACCGCTAACTGATTTTGAAAAATAGCCGCGCTGAGGTTGTTGCCTGACTTGTGGCGATCAATCAGGGCGGAAATATACTGCTGATAACCATGACGCTGCAATGACGAAATAATCTGTTGTCAGAGGACGTCAGGGAAAATAGCGTATTGTGTTTGAGCTTGCGAAAAAACACCTGGTGATATTATCGCGGTGTTCGTCTGGCAATATGGCCGGGCAATTAAATCTATTTCCGGTCAGCAGTGATTTTATTGTCCGGGTGGCGTCTGAGCGGTTTTCCCTGGGGTTGGCTGTTTGAGTACTTTGTCACAAGGTCAGTTTTTTCTGCCTGCATAACCGGGGATGATGGTAACGAGTTAACGTTCATTCGTAAGCTGTACTTAAGTGTTGTGATGACTGTGCAGTAGTACTGGTGTTGACTTTTTAATGCATAAGAATTAACTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 102274-103339 **** Predicted by CRISPRDetect 2.4 *** >NZ_MNCH01000034.1 Erwinia sp. OLSSP12 NODE_2_length_198083_cov_32.6339_ID_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 102274 29 100.0 32 ............................. AGATAGTTTCAGAGTTGGCAAAGCTTGATACT 102335 29 100.0 32 ............................. CACAGGCTGAGTTTACCAGAGCGGCGAATATG 102396 29 100.0 32 ............................. GATGGGCCGCACTTTCAGTTGCCATTTGCGCC 102457 29 100.0 32 ............................. ACCGCCGCCAGGGCGTTCTACACCCGTCACGA 102518 29 100.0 32 ............................. CCCGTCGCCTGCGCCTTGATAACCACGTTCAT 102579 29 100.0 32 ............................. TTACTTAACAGGCTCTTTAACAATATGGATAT 102640 29 100.0 32 ............................. CCCGCAACGCTATGCCTGTTATCGATCCGATG 102701 29 100.0 32 ............................. GACAGGCTGCGCAACACTCCAGGCTTGCGACA 102762 29 100.0 32 ............................. CGCTTTTGCCAGTTTGTTTACCAACAATCAGT 102823 29 100.0 32 ............................. ACAATAAAAATCCTTCCCGTACCAATAGGAAG 102884 29 100.0 32 ............................. TTAGGTGTCAGGCCAGGCGGGGGATCGCGATA 102945 29 100.0 32 ............................. GTAGTTGGCAATGCGCCACCAGAACATAAAGC 103006 29 96.6 32 ...................C......... CAACATTTCGTTGTATTTTTCATAGGCTTTTG 103067 29 100.0 32 ............................. ACAATATTGGCCTCACTGAGTTTGAGATGTCC 103128 29 100.0 32 ............................. ACCTGGATGGAACAGTTGATGGTTCGAAGGCC 103189 29 100.0 32 ............................. ACCTGGATGGAACAGTTGATGGTTCGAAGGCC 103250 29 100.0 32 ............................. ACCTGGATGGAACAGTTGATGGTTCGAAGGCC 103311 29 96.6 0 .................A........... | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.6 32 GTGTTCCCCACATACGTGGGGATAAACCG # Left flank : GATAAAACGGCCAGCGACACCTATCGCTATCTCAACTTTGACCGGCTGTCACAGTACACCGAAAAAGCAGACGGCGTGATTTTTCAGACTGCGGTCTGAGAAACGCAGCGTGTTGCTGCCACCTTACTGATGACTGAAACGGCCTGAGGAGACTCAGGCCGTTGTTTTATATAGTCAGATTGCAGGGTGACGATAACCTATTCTTTCTCCGGATATGGTACATAATTAACCCGCCCGGCAAGATCACCGTTTTTCATTATGTTGCCACTTGCGCAAATCATGCTGAACGATGGTTTGTCCAGTCATTATCGTCAGTTGCTGAAAGCGGAGGAAAGCTGTATTAACAGCAGAGGATGTCTCTTTCCCTGCGTTGCCGTTGCAATTTATGGAAGGATTTATAACCTTCTCCACTATGCCGCTTAACAACCAAAAAATGGGAAAAAAATCGGTAGATTTTTTTTAATAAAAAAAGCATTGTAAATCAGTTGATTATTCTTAGA # Right flank : GCAGGTGAATCAAAAGAAGGCGCTTGCTGGCTGGCAATCGGCTCATGTCGTTGGTGCGCGACATGTCCCCTCGTCGGGTCTGGCAATGACGCGCGCATTAACCCTCTTTTTTACTCCTGCGGGTATCGCTCTGCTGCGTTGCTTGTATGCGATATTGTTCGCCGCTGAATGTGTTAGCAAACGCTGTTTTTTTACCGCCGGACTGCAATAATTAACCGGTCAATAATAATGTGTTCGCCGAAAGGGACGCTTGTGCGACAGAGGGTAGGAGGGCAGCGCTATGGAATATGAGTTATTACGCGATGTCACCGGTCAGCTGAAAATGCGGATGTCGATGGGGCATGAGGCGGTTGGCCACTGGTTCAATGAAGAAGTCAAACAGAACCTGGCGCTGTTGTCGGAGGTGGAGCAGGCTGCTGCCAGCCTTCGGGGTAGTGAGCGACAGTGGCAACGGGTGGGTCATGAATATACCCTGTGGATGGATGAAGAAGAGGTAATTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATACGTGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //