Array 1 6435-5966 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029050.1 Miniimonas sp. S16 plasmid pS16-1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================== ================== 6434 28 96.4 33 ......C..................... CGCCTCCTCGAAGTTGCGCTGGGCGTCGCGGGC 6373 28 96.4 32 ......C..................... CGAGTTCGAGAGTTCGTAGATGGGGCCGGTCC 6313 28 100.0 33 ............................ GCAAGTGCCTGCGTCTCGTCCTGGATGGCCAGG 6252 28 100.0 33 ............................ GCTGATGAGCCCGACGTCCGAGGCCGGCAAACC 6191 28 100.0 33 ............................ ATGGCGCCGGACCTGCGTCTGCAGGCGGCCGCG 6130 28 100.0 50 ............................ TGTCGGCGACAGCCGGGATGGCCGCCGCGAGCAGCGCCACCATCGGCGTG 6052 28 100.0 33 ............................ GACGGCGCGGAGTGGCTGGTCGAGACTCGCTGC 5991 26 89.3 0 .............A..--.......... | ========== ====== ====== ====== ============================ ================================================== ================== 8 28 97.8 35 GGACCGTCCGTGTGCGCGTGGGGCCGGG # Left flank : GCCGCCTCCACCACCGACACGGGGACACGACGCGCCGTCACCACACCATCTGGCGACATGCGATCAGAGGTTGCTACGATGAGGAGACTCCTTCTGGTCATGGAAATGGGTAGGACGGGGTGGCCTCGAACCCGGATGCCGCCAAGCAAGATGCGGGTTCGAGGGGGAGAAGTAAGACTCCGGCAGGGCCGGCCCTACGGGGCCGGCCCTCCTGTTTATGCGGACTTGCTGAGGGTGGCCACCTCTCTACGGCTGAGGAGTTCACCGTCAGCCCGCTCGGGCAGATCAGTGCTGGACAGGTGCTCGGACACCAGCTGTGCGAGGTACTCGCTCGCCGGCATGCCGAGAGCACGCGCGCGGGACTGGACTTCTAGCCCTAGCGCGCGAGGAACGCGCGTCTGGATCAGGAGACGGTCACCCTTGTGCGGCTGTGCCATGCGTAGACCCTCCCATAATCAGATTGGAACGGTAGGGACGACGCCCCGGCGTGTCGGCGGACC # Right flank : GCTGGTTGGCCTGCGTGGGTGGTCATGCTGGGACGCGGGCGGGGTCGGCTGTGCGCGTGTGTTGGACGGGAGATCCCTTGCGGGTCTCGTTGACCCCTGGTGGGGTCTGTTCGGCTACTGCCACTGGTGGGTGGTGTGTGGCCGCGCCCGCGCCAGCTGGGTGCTGGCTCTCCGTAGGCGCTGCGACGTGGTGGTCGCGGATGTTGCACGCCGCGTTGATGTCGGCGTTGGCCACGTGGCCGCAGGAGACGCACACGAAGTCCGCTTGGGTTTCGCGGTTCTGGGGTGCTCGGTGTCCGCAGTGGTGGCAGGTTTGGCTGGTCCCGGCTGGGGGGACGAGGGTGAGGGTCGATCCGTAGCGGGTCGTTTTGTAGGTGAGCTGGCGGCGGAACTCCCCGAACCCGGCGTCGAGCAGGGCCCGGTTGAGGCCGGCCTTGGCGCGTCGCTGGTTGGGGAGGTAGGCGCCGGGCTGCGCGGGGTCGGGTTTGGGGTAGGGCCGT # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGACCGTCCGTGTGCGCGTGGGGCCGGG # Alternate repeat : GGACCGCCCGTGTGCGCGTGGGGCCGGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 2395645-2409287 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029049.1 Miniimonas sp. S16 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================== ================== 2395645 28 100.0 33 ............................ CTCGCGGACCCCGTAGTCGACGTTGCCCCAGAT 2395706 28 100.0 33 ............................ ATCACATCCGCGCCAGCATCACCGCCGCACGCG 2395767 28 100.0 33 ............................ CCGATACGCGCCCAGCGTCGGCATCGGAGACCC 2395828 28 100.0 33 ............................ CATCTGAGCGGCCCGGATTGCGACCTTCGTCGC 2395889 28 100.0 33 ............................ GGTCGACGCGCTGGCGGCCCTGCGGAAGATGCG 2395950 28 100.0 33 ............................ CCAGGGCCGGTTCGACCACCCGCTCGACCCAGG 2396011 28 100.0 33 ............................ CCCTTCCGCGAAGGGTGAGGCAACTCCCCTTCC 2396072 28 100.0 33 ............................ CAGGTCCAGGAGTGCGTCGACGACGTCCGCGAT 2396133 28 100.0 33 ............................ CTGCTGGTCGATCCGGGCGTACTCCTCGATCTC 2396194 28 100.0 33 ............................ TCAACCTCCCCTCAAGTACCCTCGGTCGTACGC 2396255 28 100.0 33 ............................ CGCGACCGGCAGGATCGTCCCGATGCACTCCCG 2396316 28 100.0 33 ............................ GTTCGCGAACGGCGCGACGATGCAGTTCAAGGC 2396377 28 100.0 33 ............................ CCGACCGGGGTCCACCCGTCCGCAGGGAAGGGC 2396438 28 100.0 33 ............................ CCTGCACCAGCCAGCGAGAACTCAGCAGGCTGA 2396499 28 100.0 33 ............................ CACCCTCTCGGTCAAGCACCGCGACGGGCAGTA 2396560 28 100.0 33 ............................ CTTCTCCGTCCCCGGGCCGGGCCTGGGAAAAGG 2396621 28 100.0 33 ............................ GGCCGCCGGCGTGAGCCAGCGCGACCTCTCCGA 2396682 28 100.0 33 ............................ CCCACATTGCCTCCACGCCGGCGTGCCTTGCTG 2396743 28 100.0 33 ............................ CCAGTACAGGCAACCGGCCATGACGACCGTGAA 2396804 28 100.0 33 ............................ CGTAGCGGCCCGGCCGCTCGGTGTCTCCCGAAC 2396865 28 100.0 33 ............................ TGTGGAGCGGGTGGAGGCGTCGGGGCAGGGGTG 2396926 28 100.0 33 ............................ CTCGAGTCGGGGATCGGCCGGGTGAACCCGCGG 2396987 28 100.0 33 ............................ GCCGCCGATGATCGCGGAGGTCGTCTCCGACGC 2397048 28 100.0 33 ............................ GTGGCGGGGTCCTCGACCGGCTCCACCCACCAC 2397109 28 100.0 33 ............................ CATCCGCCTCATCGACGCCTGGTGGGCCGCGCG 2397170 28 100.0 33 ............................ GGCGTTCGCTGTAGTGCCAGCCGGGGGCACGAT 2397231 28 100.0 33 ............................ CTCCTCGAGGTACCGGGGGCGGCCCATGCCCTG 2397292 28 100.0 33 ............................ CCACCGAGGGGTCGACAGCGGTCAGCAAGGGGC 2397353 28 100.0 33 ............................ CTGCAACGGACAGACGTGCATCTGCACGTTCCG 2397414 28 100.0 33 ............................ CGACTCCGTCGAGCTCGACAAGTCCTTCACCGA 2397475 28 100.0 33 ............................ CAGGTAGATGTCGGTGAGGTCGGTGAGCGTGGT 2397536 28 100.0 33 ............................ CAACGAGTACGCGATGACCGTCACCGACGTGTG 2397597 28 100.0 33 ............................ CCGCCGCCGACCAGGGACGTCTTGAACTCGTCG 2397658 28 100.0 33 ............................ CCAGCCGGCCACGACGGAGATGCCGTCGAAGGC 2397719 28 100.0 33 ............................ CCGTATGCCTACACAGGTGGTTGTTTGGCCATT 2397780 28 100.0 34 ............................ CGGGGTATGGGACGCCTCGCCGCTGGTGACGCTG 2397842 28 100.0 33 ............................ CGGGCTGCCTGTCCGCTCAGGGAAGCCGGAGGA 2397903 28 100.0 33 ............................ CGCCGTGAGCACGAGGCGATGAACCGCGACCCA 2397964 28 100.0 33 ............................ GGCGTGCGCGGCAACGAAGTCGGAGGTCACGAA 2398025 28 100.0 33 ............................ CCGACTCCCAGAAGGATACGAATAGCAGAGGGG 2398086 28 100.0 33 ............................ CCGGTGCGCGAGACCCTGCACCCACGCCCAGCC 2398147 28 100.0 33 ............................ GTACGTCCGCTCGCGCGCCTTCCGCGCCTCCGA 2398208 28 100.0 33 ............................ CGGCCCAGCTCTGCCACCGTCGGGTCATCCCTG 2398269 28 100.0 33 ............................ GCGGGGTCATGAGACGAGGCCTTCGAGGTCGAG 2398330 28 100.0 33 ............................ CGGCTTCGGCAGGTACAGGAGCGCCGTCAGCAC 2398391 28 100.0 33 ............................ GGCCGTGACCGCCGCCTCTAGGTACGGGTGCCA 2398452 28 100.0 33 ............................ CTCACCGAGCAGCTCGGGCTGCCCGTCGACCTG 2398513 28 100.0 33 ............................ TCGTCTCCGACGTGAACCTGTCGGGCGCCGTAC 2398574 28 100.0 33 ............................ CGACTTCAGTGAAGGACTGACAAAAGTAAATGA 2398635 28 100.0 33 ............................ CCATGTGGCTACGGATGAGAGTCCGTATCGTCA C [2398640] 2398697 28 100.0 33 ............................ CCGTCCCAGTAGTCGAGAATGTCAGACGTGTAG 2398758 28 100.0 33 ............................ CCGTCGCCAGGGACTGATTCCGTGACGCGCCGT 2398819 28 100.0 33 ............................ CCCTCGAAAGCTCGACCCATGAAAGGAGACACC 2398880 28 100.0 33 ............................ TCCAACCCAACCAGCACAATCCCTACCCCCGGA 2398941 28 100.0 33 ............................ GCCGCCCGCGGACCTGTCGTACGGCAACAAGCG 2399002 28 100.0 33 ............................ CCAGCCGCGCTCTCGGCGCAACGTGGATCTGCG 2399063 28 100.0 33 ............................ GCGGGCCCTGGACGTCCTCGACAGCCAGGACGC 2399124 28 100.0 33 ............................ CTCGCTCACCCATGCGGTGCGGGCGCCGGGCCA 2399185 28 100.0 33 ............................ CGGCCGCGCCCCCTTCACCCTCGCCGACATCCG 2399246 28 100.0 33 ............................ CGAGGCGGTAGGTGCCGCGCTCTCCGGTGGGGG 2399307 28 100.0 33 ............................ GGAGGACCCCATGGCCACCACCTCCCAGCGAGC 2399368 28 100.0 78 ............................ TCAATCCCTCGCTCGGACTTCTGGGCATCGTGCGTGCTCCGGCCCGTGGCGGGGTCCTCGACCGGCTCCACCCACCAC 2399474 28 100.0 33 ............................ CATCCGCCTCATCGACGCCTGGTGGGCCGCGCG 2399535 28 100.0 33 ............................ GGCGTTCGCTGTAGTGCCAGCCGGGGGCACGAT 2399596 28 100.0 33 ............................ CTCCTCGAGGTACCGGGGGCGGCCCATGCCCTG 2399657 28 100.0 33 ............................ CCACCGAGGGGTCGACAGCGGTCAGCAAGGGGC 2399718 28 100.0 33 ............................ CTGCAACGGACAGACGTGCATCTGCACGTTCCG 2399779 28 100.0 33 ............................ CGACTCCGTCGAGCTCGACAAGTCCTTCACCGA 2399840 28 100.0 33 ............................ CAGGTAGATGTCGGTGAGGTCGGTGAGCGTGGT 2399901 28 100.0 33 ............................ CAACGAGTACGCGATGACCGTCACCGACGTGTG 2399962 28 100.0 33 ............................ CCGCCGCCGACCAGGGACGTCTTGAACTCGTCG 2400023 28 100.0 33 ............................ CCAGCCGGCCACGACGGAGATGCCGTCGAAGGC 2400084 28 100.0 33 ............................ CCGTATGCCTACACAGGTGGTTGTTTGGCCATT 2400145 28 100.0 34 ............................ CGGGGTATGGGACGCCTCGCCGCTGGTGACGCTG 2400207 28 100.0 33 ............................ CGGGCTGCCTGTCCGCTCAGGGAAGCCGGAGGA 2400268 28 100.0 33 ............................ CGCCGTGAGCACGAGGCGATGAACCGCGACCCA 2400329 28 100.0 33 ............................ GGCGTGCGCGGCAACGAAGTCGGAGGTCACGAA 2400390 28 100.0 33 ............................ CCGACTCCCAGAAGGATACGAATAGCAGAGGGG 2400451 28 100.0 33 ............................ CCGGTGCGCGAGACCCTGCACCCACGCCCAGCC 2400512 28 100.0 33 ............................ GTACGTCCGCTCGCGCGCCTTCCGCGCCTCCGA 2400573 28 100.0 33 ............................ CGGCCCAGCTCTGCCACCGTCGGGTCATCCCTG 2400634 28 100.0 33 ............................ GCGGGGTCATGAGACGAGGCCTTCGAGGTCGAG 2400695 28 100.0 33 ............................ CGGCTTCGGCAGGTACAGGAGCGCCGTCAGCAC 2400756 28 100.0 33 ............................ GGCCGTGACCGCCGCCTCTAGGTACGGGTGCCA 2400817 28 100.0 33 ............................ CTCACCGAGCAGCTCGGGCTGCCCGTCGACCTG 2400878 28 100.0 33 ............................ TCGTCTCCGACGTGAACCTGTCGGGCGCCGTAC 2400939 28 100.0 33 ............................ CGACTTCAGTGAAGGACTGACAAAAGTAAATGA 2401000 27 96.4 33 .....-...................... CCATGTGGCTACGGATGAGAGTCCGTATCGTCA 2401060 28 100.0 33 ............................ CCGTCCCAGTAGTCGAGAATGTCAGACGTGTAG 2401121 28 100.0 33 ............................ CCGTCGCCAGGGACTGATTCCGTGACGCGCCGT 2401182 28 100.0 33 ............................ CCCTCGAAAGCTCGACCCATGAAAGGAGACACC 2401243 28 100.0 33 ............................ TCCAACCCAACCAGCACAATCCCTACCCCCGGA 2401304 28 100.0 33 ............................ GCCGCCCGCGGACCTGTCGTACGGCAACAAGCG 2401365 28 100.0 33 ............................ CCAGCCGCGCTCTCGGCGCAACGTGGATCTGCG 2401426 28 100.0 33 ............................ GCGGGCCCTGGACGTCCTCGACAGCCAGGACGC 2401487 28 100.0 33 ............................ CTCGCTCACCCATGCGGTGCGGGCGCCGGGCCA 2401548 28 100.0 33 ............................ CGGCCGCGCCCCCTTCACCCTCGCCGACATCCG 2401609 28 100.0 33 ............................ CGAGGCGGTAGGTGCCGCGCTCTCCGGTGGGGG 2401670 28 100.0 33 ............................ GGAGGACCCCATGGCCACCACCTCCCAGCGAGC 2401731 28 100.0 33 ............................ TCAATCCCTCGCTCGGACTTCTGGGCATCGTGC 2401792 28 100.0 33 ............................ CGCGTCGGATGCGGCGCTGCGGGCGCGTGGCAC 2401853 28 100.0 33 ............................ CGCGTCGGATGCGGCGCTACGGGCGCGGGGTAC 2401914 28 100.0 33 ............................ CGAAGCCGACCCACAGGCAGGCGGCGCCCCATC 2401975 28 100.0 33 ............................ CCACGGCTCGCCGTGCTCGTCGGTCTCGACGCG 2402036 28 100.0 33 ............................ GCCCAAGGCCCGCCGTGGCCGTGTAGGCATCGC 2402097 28 100.0 33 ............................ CCGCTCGGGCCGCTCCCCGGGAACCGTGGATGC 2402158 28 100.0 33 ............................ CGGGCCAGCCGTCTGCGACACCTGGCTACTGGC 2402219 28 100.0 33 ............................ GGCGTGGGCGCAGATCGCGACCCTCGGGGGGAC 2402280 28 100.0 33 ............................ CTCCTTCAGGGCGTCCGCCGCGAGGTCCGTGTT 2402341 28 96.4 33 ........................C... CCCGGGCACGCTCGCTTCTCCGAAGGCGTCGAT 2402402 28 100.0 33 ............................ GGCGACGGGCATCGGTCCGGCCGATCCCCACAC 2402463 28 100.0 33 ............................ CCGCCGACACCGACTGCTGTGCGCTCGCCGTGT 2402524 28 100.0 34 ............................ CTCGGCGTCGAACACCTTGGGCCCATCCACCGCC 2402586 28 100.0 33 ............................ GCAGATCGCGAACGCGGCGCTCGCCCTCGAGGA 2402647 28 100.0 33 ............................ CGCGCCCACGATCACTGGCCCGACCGGTGCTCA 2402708 28 100.0 33 ............................ GACTCCGGAGCGTCGCGCGTCGTCGTTAATCTT 2402769 28 100.0 33 ............................ GTCGCCTCGTCGGATGCGCTGGGCGAGCGCCTC 2402830 28 100.0 33 ............................ GCCTCGCTCATCAGCCTGGCCAAGGGCGGTCGG 2402891 28 96.4 34 ........................C... CCCCCCGGAACGCCAACGGGCACCGTCGCCGCGA 2402953 28 100.0 33 ............................ CCAGTTCGTTGACGACGCGCTGATCTACACGTC 2403014 28 100.0 32 ............................ CGCGAACGACGCGCTACCCGCCGAGTTCCCGA 2403074 28 92.9 33 CG.......................... CGCCCACCCCGCCATCCCCGAGCGGCGACGACC 2403135 28 100.0 33 ............................ GATCGGCCACACCGCGAAGGCACCCCCACGACG 2403196 28 100.0 33 ............................ CCCCGCGAGCGCGAGCGCGACGACCGCGAACAC 2403257 28 100.0 33 ............................ TCGCGTGGGGGTCTCCCGGGTGTGCCTCCTCGA 2403318 28 100.0 33 ............................ GTTCGCGCCGAGCGCCCGGTTCGCGTCCGCCGT 2403379 28 100.0 33 ............................ GATCGACGCCTCCACAGCCGGGGCAGGAGCGGG 2403440 28 100.0 33 ............................ CCAGCTCGTCGCGCGCCGATGGCGACCCCACCG 2403501 28 100.0 33 ............................ GCCGACTCGACGTACCTCCAGCAGAAGGTGACG 2403562 28 100.0 33 ............................ CGTTTCCTCGGGGGGCGCGGGTCCCGCGCTGGC 2403623 28 100.0 33 ............................ CCCTTCCTAGAACCCTTCCCGGAACCCTTCCGC 2403684 28 100.0 33 ............................ TGGTGGACGCGGCCGCCACGTCACAGAGTGGCG 2403745 28 100.0 33 ............................ TGGTGGACGCGGCCGCCACGTCACAGAGTGGCG 2403806 28 100.0 33 ............................ GTCGTCGTCGGCCGCGAGCTCGGGGATCGTCGC 2403867 28 100.0 33 ............................ CGGGACCATCGGCATGTGCCCGTCGCGCACAGC 2403928 28 100.0 33 ............................ GCGTCGCGGCCGTCAGCCGCTCCGAAGGGTGCT 2403989 28 100.0 33 ............................ GGGTGAGGCAACTCCCCTTCCCCCTTCCCCTTA 2404050 28 100.0 33 ............................ GCCGTGTGCGTCGTGCGGGCACGGGAAGTCGAT 2404111 28 100.0 33 ............................ GCCTGCATCGGCCATCGACCCCGCGCCCTACCT 2404172 28 100.0 33 ............................ TCGGCCGATGTCGGGTCAGGATGCGTGGATCGC 2404233 28 100.0 33 ............................ CCGCCACGGGGAGCCCGCTTACGGCACAGGCTC 2404294 28 100.0 33 ............................ CAGCAGCGCACCAGCGAGAGCGCGCGCCACCAG 2404355 28 96.4 33 ................T........... TTGGATCGCCCGCCACATGTTCACGAGCCACCC 2404416 28 100.0 33 ............................ GGCTGTGACGGCGCTGTCGGCGCGTTGCACGTT 2404477 28 100.0 33 ............................ CAGGTCTGTCGGTCCGTCCGACCCGCCCCACCG 2404538 28 100.0 33 ............................ GACCTCACGCAGGTCATCGACGACGACCTCGCC 2404599 28 100.0 33 ............................ GACCTCGACCGGAGTGCATCGCGAGTGCCGCAC 2404660 28 100.0 33 ............................ GTACGTGAGTTGCTGCACGGAAGTGAGCGAGAG 2404721 28 100.0 33 ............................ CCTCGACCCCTCCATCGTCTCCACCACCGTCAG 2404782 28 100.0 34 ............................ CGATGCGCCGGCGAGCAGGCGCACGAGCCGCGGC 2404844 28 100.0 33 ............................ CCAGCCATGAGTGTCCTCCTCAGGACGAGAGTG 2404905 28 100.0 33 ............................ GGTTGGCAGGACGACGAGGAGGAGACCACCGAT 2404966 28 100.0 33 ............................ GACCTGCGCAGTCCGCACCGCGCCCTTCTTGCG CC [2404971] 2405029 28 100.0 33 ............................ GGTCACCAACGGCGATGTGACCGTGTGGCTGCC 2405090 28 100.0 48 ............................ TAGAACTTCATGGCAGACGTCACCCCCCACCGCTACGGTTCGCACATG 2405166 28 100.0 33 ............................ TGCCCCCTCAGGCGCCTTCGGGCGTCGAGGAGG 2405227 28 100.0 33 ............................ CCCGAGGCCTCCCCCAGCCCCCTGGACCTGGCG 2405288 28 100.0 33 ............................ GGGCGCGCCGGCTCGCGGGCCGGAGGAGATGGC 2405349 28 100.0 34 ............................ CAGCTGGGCGTCGGTGCGCGCGTCGAGCCACGAC 2405411 28 100.0 33 ............................ CCCGGCCGCGCTCGTCTCGCTCGCGTCGGTCGC 2405472 28 100.0 33 ............................ CTCGGCAAGTTGACCGTGAACTGGACGAAGCCG 2405533 28 100.0 33 ............................ GCCCGGTGACCCGGTTGATGAACTCGCAGCCCG 2405594 28 100.0 33 ............................ CTCGGTGCGGCACGGACTGCGGGACGCCCTCGC 2405655 28 100.0 33 ............................ CGGCTCGAGCTCGCGTGCCAACGCCAACGACAG 2405716 28 100.0 33 ............................ GCAGATCGCGAACGCGGCGCTCGCCCTCGAGGA 2405777 28 100.0 33 ............................ GCCGCAGCGCGTGCCGCTGCTCGTCACGCGAGG 2405838 28 100.0 33 ............................ TGAGCGCGCGGGCGCTCGTGGTCGAGCTCGGCG 2405899 28 100.0 33 ............................ CGAAGGGACCAGCCATGCACCTCACCGCCCGCG 2405960 28 100.0 33 ............................ GCGCGTCACCCTCTACTGCGACCCCGCCGTGAA 2406021 28 100.0 33 ............................ CGCCTGGCACAGCGGCATCGCACCCGCGGCACC 2406082 28 100.0 33 ............................ GCCCGAGCGCGCCTTCTTCCACGCCTGCCGCAC 2406143 28 96.4 33 .C.......................... GAAGAAGTCCGACGCGGCGGCTTGGGTGGCCTG 2406204 28 100.0 33 ............................ CGCGCGCATCGCACGCGACCTCGACCTCGACCC 2406265 28 100.0 33 ............................ GGCGACCCGCGAGGCGCCGACGTGATGGCCGCG 2406326 28 100.0 33 ............................ CGCGGCCTGCCGCTCGTCGGCGTCGTCGGGGTC 2406387 28 100.0 33 ............................ CCGCCCGACGGGGCCGCCGGGCGAGCCCATGCC 2406448 28 100.0 33 ............................ CAGCGCTGCCGCGATCCGCGGCACTGTGACCGC 2406509 28 100.0 33 ............................ CCTCGGCCTGTACGTGTGGTGGAAGCAGTCGAC 2406570 28 100.0 33 ............................ CGGCGCGGACCCGCATTTCGACGGCATCCAGAC 2406631 28 100.0 33 ............................ CATCGTGAGGTCCTTCGCGCACACCACGAGCAG 2406692 28 100.0 33 ............................ GAGCGCCGGGTACTCGGTGGACGTGTCGAGCAG 2406753 28 100.0 33 ............................ CGACGCGTCCAAGATGGAGACGGCCCAGCGGAA 2406814 28 100.0 34 ............................ CGCCGCCGCCAGCGCGCCCTTCATCCCGTCAGCG 2406876 28 100.0 33 ............................ CCGCTCGCGCCCACCTGCCCCCGCGCCGCCTGG 2406937 28 100.0 33 ............................ GCCCACTGCCTGGCTGCCGTCTGCGCGGCCAGC 2406998 28 100.0 33 ............................ CGACCTCGCGGTGGAGTACGTGCCGCAGGCGGA 2407059 28 96.4 33 ........................A... CTGGTCGCCGACGGCGGTGATCAAGTTGTGCGT 2407120 28 100.0 34 ............................ TTCGGGTCCGCGCCGTTGATGTACGGGCCGTGGA 2407182 28 100.0 33 ............................ CGAGACGGCAACGGGCGCGGCGGACACGATGCG 2407243 28 100.0 33 ............................ CAGCGACCGCCCGAGGGATGGGTGGTCGGACGC 2407304 28 100.0 33 ............................ CACCCCGGTCGTCTACTCGGTGACGACCGGTGG 2407365 28 100.0 33 ............................ CTCTTTGAGCGCGTCCGCTACCAGGTCCGTGTT 2407426 28 100.0 33 ............................ CCACACCACCGACGCATCCACGCTGGAGGTGAC 2407487 28 100.0 33 ............................ CGCCTCATCGGCCGACTTCGCCACCCCCGAGCG 2407548 28 100.0 33 ............................ CTCATTCAGCCGGGCTCGCGCGTCCTCGATGCC 2407609 28 100.0 34 ............................ CCGCGGCAGCTTCATGCCGTCCAACATCTCCCCG 2407671 28 100.0 33 ............................ GCCCTGTACTCGGCCGACGTGGCCGAGCTGGAC 2407732 28 100.0 34 ............................ CTTCGGCCCGCCGCCACCTGGGTGCTGGTAGTCG 2407794 28 100.0 33 ............................ CGCGGACGTCACGTAGCCGCCAGCGAGCGGGTA 2407855 28 100.0 33 ............................ GTACCAGATCACGTCTTATCGTCCTCCTCACCC 2407916 28 100.0 33 ............................ CTGGGCGCCGACGGCGGTGATCAGGTTGTGCGT 2407977 28 100.0 33 ............................ TCGTGTCCGCCGCCGGCGACGTCGCGTCCGTCG 2408038 28 100.0 33 ............................ CTTCTCGAACTCCGTGTCGTTCTGGTCCAGATC 2408099 28 100.0 33 ............................ TCCGCAGAGCCGATCGACGTGAGCACGGACGCG 2408160 28 100.0 33 ............................ TCCGCAGAGCCGATCGACGTGAGCACGGACGCG 2408221 28 100.0 33 ............................ GAAGGCCCCGTGGCAGCGACTCGCGGCCAGGGC 2408282 28 100.0 33 ............................ CACGGTCTTGAGGCTGGCGTTCAGGCTGCGCCG 2408343 28 100.0 33 ............................ CACCACCGGCCCCTACGCCTGGTCAGGGTCCTA 2408404 28 100.0 33 ............................ CGGCTTCGGTGACGCGGGGATCACCCATCCGAC 2408465 28 100.0 33 ............................ CCTCGGCCTGTACGCGTGGTGGAAGCAGTCGAC 2408526 28 100.0 33 ............................ CTGGTCGCCGACGGCGGTGATCAGGTTGTGCGT 2408587 28 100.0 33 ............................ CTTCTTCCACGGCCCGTACATCAACGGCGCGGA 2408648 28 100.0 33 ............................ CCGGCGGGGAGCGCACCGTGGCCGTCCTCGGAG 2408709 28 100.0 33 ............................ GTCGACGCGGGCGTGCACCGGCAGTGGGATCGG 2408770 28 100.0 33 ............................ GCTCCCGACGGCGGTCGCGACGGTCGTGCCGAC 2408831 28 100.0 33 ............................ GTCCCGCGCCAGCGGGCTGGACTGCTCCGGCCT 2408892 28 92.9 33 A....T...................... CTCGTCGCCCTGCGCGAGCACCCGCAGCACGCG 2408953 28 100.0 33 ............................ GCTCCCGACGGCGGTCGCGACGGTCGTGCCGAC 2409014 28 100.0 33 ............................ GTCCCGCGCCAGCGGGCTGGACTGCTCCGGCCT 2409075 28 92.9 33 A....T...................... CGGTGAGTGCCCGAACGGAAGCATCAGCAGCGC 2409136 28 100.0 33 ............................ CGGTGAGTGCCCGAACGGAAGCATCAGCAGCGC 2409197 28 100.0 34 ............................ CAGGTTCGGGGAGAGCGCGAACCGTTGGGAGGGC 2409259 28 96.4 0 .................A.......... | T [2409284] ========== ====== ====== ====== ============================ ============================================================================== ================== 223 28 99.8 33 GTGCTCCCCGCGCGAGCGGGGATGGCCC # Left flank : CACGAACTATGGGCAGGGCATCGAGGACGAGCTGGTCGACTGGTGATCGTGCTGGTGCTCACCGCTGTCCCGCCTTCCTTGCGTGGCGTGCTCACCCGGTGGCTCATCGAGATCGCGCCCGGAGTCTTCGTGGGGAAGGTCTCCGCGAGGGTGCGCGACCTGCTGTGGGAGCGCGTCGTCGACGGCGTCGGGCGGGGAAGAGCGATCCTCGTTCACTCCGCGAGGAACGAGCAAGGCCTCGACTTCCGTGTCCACAACCACGAGTGGCACACGGTCGACTACGACGGGATCAGCCTGATGCTGCGGCCCCACGACGAACGGCGCGGGGCGGACGCCGCTAGATCGGGCCCTGCATCGCGAGCGTCGGTCCGCGTCGACTCTTCGGCTGCAGGGACCGCCCCCCGAAACTGGAGCTACGCCGAGCGGCGACTGCGGGGTCCGCGCGCTGGGAAGTGATCGCGCGCGGAGCGGCCGCGAAGTAAGGTCGCAGGTCAGCAAGT # Right flank : CCGGCGAGGCGTCACCGCCGGTGTCAAACCCGGGGCTTGACACCGCACACCACGCGGCTGCGGCCGCCGACACGCCCCCCTCGCGCCGCCAGCCCCCCGGCCCCGCCTACTCGACCACGACGACGGGCGAGCTGACCTCGATCGCTCCTTCGCCGTCGGGCACGAGGTTGACGCCGAAGAGCGTCGCGGAACCCGACCGGTGGTGCCGCGCGAGCGCGCGCAGCGGCTGGCGCCCGCGCGCGAGGGTCTCGGGGTCGACGGTCGTCAGCGCGCATCGCGTGCACGGCCCGATCACGCGCATCGGCACGCCGCCGATCACGATCCGCCGCCACGACTCCTCTGCGAACGGCGCGAGCTCGCGGTCGGAGCCCGAGACCACCACGTTCGGCCGGAACCGCCGCATCGGCACGGGCACACGATCCGCGTCGGAGCCGCGCTCGTCCGCCGCGATCCACTCGTTCACCCGCGCCAGCGACGCCGTGCTCGTCAGCAGGATTGGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //