Array 1 9548-10304 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTYP01000040.1 Bacillus cereus strain AFS003807 AFS003807_105_D9_Contig40_140523, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 9548 32 100.0 34 ................................ CTTTCCCGTTCCAACCTTCACGCGCAACTCTTTC 9614 32 100.0 34 ................................ TTATTTCAAGTGATTTACAAATGCCAGGTAAATA 9680 32 100.0 34 ................................ ACACTTGGTAAGATTTTAGGAGTAGTACGTTAAT 9746 32 100.0 33 ................................ CTTAGAACCTATAAAAGAACAACCTTCTACCAA 9811 32 93.8 34 .........C...A.................. ATTTGGTAGCGCATTGTTTATGGATGCACGATTT 9877 32 93.8 36 .......T.......A................ ACAATTCCTCGTGGTATGAACCCTGAAGATGTTAAA 9945 32 93.8 33 .........C.........T............ ATGCCAATCGGTGTCCAAGCCGACTTCATTAAC 10010 32 90.6 33 A..........A...................C CATTGGTTTATCAGGAGTCATTGGCTTGTCATG 10075 32 93.8 34 ...........A.......T............ TACCTCGGGTTTATATTTATCTGGAATGCCCATA 10141 32 96.9 34 ...........A.................... ACTCTGGTTATGGTTTTTCCTATGAAGTAAATGG 10207 32 96.9 34 ...........A.................... ATTGCAGGGAAAACAGGTAGCGGGAAATCATTTC 10273 32 90.6 0 ...........A........AC.......... | ========== ====== ====== ====== ================================ ==================================== ================== 12 32 95.8 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : TATCTAGTTATATATTAAAAGTTGAACACAAATAAAGAGAAGAATAATTAAAGTATTTTTGAGTTAGCAAAATAAAGGAATTTTTAGTATTCAATATTCTTAAGAATGTTATATCATAAAAAAAGATCAAACGATGATATAAAGAATAAACTTGATAGGTAGATAGAGAGACAATATATAGTGAATTTTATTGTAAATTACGACTCAATATATTAAGGGTATTATGAAGCTATACATTTTTGTTAATTAGTTAGTTAATAACTATGAAAATAAGGTCGAATATATTGATATAAAAGAATGAGTTGATTTAGAAAACCTTTAATTTTTTAGGTGCGAATGTATAGCAAACATAAAATTCCTAATACATTCGCACCTAGAATTCTCATGCTTTATGATGGGAATTTATGATTTTTTATACAAATTAGTTTATTAAATAAAAACATTTTTATATTTTTGGATAAAACTAACGTATTTGTGGTTGATTTCGAACACAAATCGGT # Right flank : TTAGTAATGCTCTGGCTTTAAATCGCTCTGCAGATGTAGATACTCAACTGGAAGTATCTATATCTGTAGTATCTAACACACATGTTATAAACATAAAATGGAGGGAGATTGAATGACCTACATTGCTCATATACGCGAGAATGACAGTCAAGTACAAACAGTCGAAGATCATTTATTAGGAGTAAAAGAACTAGCTGAAACCTATGGAGAAAAAATTGGTATAAAACATTTAGCTGGTTTAGCTGGTATGCTCCATGATATGGGGAAATACACCAATGAGTTTAAAGAATATATATTGGAAGCAGTAAATAATCCTAATTCTCCACCTAAAAGGGGGAGTGTTGACCATTCAACTGCAGGGGGGAAATTGTTATATCAATTATTCCATACAGAAAATATGATTCCTTACAAAGGGATAATATCTGAGATAGTGGGAAATGCCATTATTTCTCACCACGGATACCTTCAAGATTTTTTAAATCCAGATTTAGAATCGCCCT # Questionable array : NO Score: 8.59 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 18663-19091 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTYP01000040.1 Bacillus cereus strain AFS003807 AFS003807_105_D9_Contig40_140523, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 18663 32 100.0 34 ................................ AGCAAAGCAAAGCGTGTTTTACCACTTAGTTTAC 18729 32 100.0 35 ................................ CTAATGAAATGGTTTTAACTACTATGATTAATACA 18796 32 100.0 33 ................................ GTGTAGACGCCTTATCGGAAATGCAAGAACATA 18861 32 100.0 35 ................................ TCATAAATTGCAATAACTCTAACATGTCATTACTA 18928 32 100.0 34 ................................ GCTAGAGACGATATCAGTTATTACTTAGCAAAAA 18994 32 96.9 33 .....................A.......... CCGTTAACGAAAGTATAAAAAGCATACGTGCCG 19059 32 75.0 0 ....T.T..C.......A......T.A.G.C. | A [19082] ========== ====== ====== ====== ================================ =================================== ================== 7 32 96.0 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : AGATGAATATCCACCATTTTTATGGAAGTAGGTGTAACAGTTGCTAGTATTAATAACATATGATGTAAGTACAGCTAACAGTATTGGACAAAAAAGACTGCGAAAAGTTTCGAAAACATGTCAAAATTATGGCCAACGAGTCCAAAATTCAGTGTTTGAATGTGTTGTGGACGCAGCTCAATTTGCTACTTTAAAAATGGAATTAATTAAAATTATTGATGAAGATGAGGATAGTCTCAGATTTTATCAGTTAGGTAACAACTATAAAAATAAGGTTGAACATATCGGTATAAAGGAATCCGTTGATTTAGAAAGTCCTTTGATTTTTTAGGTGCGAATGTATAGCACACATGAAATTCCTCGTACATTCGCACCTGAATTTTCATAATTTATGAGTGAATTTTAATATTTTTCATACAGGTTCTCTTATTAAATAAAGAAATATGTATATTTTTGAACAGAATTAATGTATTTTTGTATGATTTTAAACAAAAATCGCT # Right flank : TGGTAAGATGCTTGATAGTAATTTAGTGTCTCTGCTGGAATAAGAGGACCTGTTTCAATTCATACGGCAACAAGTGTTGATCCGATTGATATTACTAGTATGCAGATTACGAAAAGTGTAAATTCTGAGCTGGGGAAGGATAAAGGATCAGATACAATGGGGATGAAGCATCGTGTTGATTTTGGAGTCTATGTTTTTTATGGAAGTATCAATACACAGTTAGCAGAAAAGACAGGTTTTACTAACGAAGATGCGGAGAAAATTAAAAATGCACTGGTTACATTGTCTGAAAATGATGTATCAGCAGCACGACCTGAAGGAAGTATAGAAGTACATAAAGCTTATTGGTGAAAGCATAATTCAAAACTTGGCCAGTACCATTCCGCAAAAGTACACCGTTTACTGGATATTAAGCGGAACATTGACGAACCAAAATAATTGATGACTATAACATTTTGGTAAAAGAATTAGATAGTTTAAAAGTGAAAATTATTGATGGA # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 37201-37494 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTYP01000040.1 Bacillus cereus strain AFS003807 AFS003807_105_D9_Contig40_140523, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 37201 29 100.0 36 ............................. GTTGAAATGTATGAAGAAAGCACCCCTAAACTAAGG 37266 29 93.1 39 ........T..A................. ATTCGTTGAATAATAAAAGCACCAATAAGCACGGTGAGT 37334 29 93.1 36 .A......T.................... CTAGTAGTTAATTTGAACTGGGTATTTGACAGTGTG 37399 29 93.1 38 ..G...T...................... TGGGGGAATGCTCGGCACTTCACTAAATCATTGCGAAG 37466 29 72.4 0 ..T......C..G......A.T.A.G.G. | ========== ====== ====== ====== ============================= ======================================= ================== 5 29 90.3 38 TTAAAACAAAACAATAGATGTATTGAAAT # Left flank : ACAAAGACCGTTACATAATACATTAATTTGCTGGTAAAAAAGCAGGATATTGTTAAAATACAAGGGATCGTCGCACATTCATTGTTAATGATCCATATATTATCGGGGGTTAAAACATAACAATAGATGTATTGAAATACTTATTATTAAGTCAGTAAGAGCCCTCTATTTAGGTTATAACAAACTAATAGATGTATTTAAAAAGATAACAAATCAATAAGAAACCCTGGGTGCAAGAGTGTGAATTATTAAATTTTTGGTGGATTTCCACGCCATAAATGGAGAAGTAATACAAGGTGAATTTACCAAGTGTCAACGCTCCATAAGGTAGTATCTAATGTTAAATAAACATTGATACATAAGCATCCTGGATGCTTTGAAGGGTGTAACACAAAGACCGTTACATAATACATTAATTTGCTGGTGAAAAAGCAGGATATTGTTAAAATACAAGGGATCGTCGTACAATTCATTGTTCATCATCCATATATTATCGGGGG # Right flank : TCTCATTGAACTTTGATTCGATTTGTATATAAATAGAGTAAATGTTATTATATAAGTAATCCAATACTGAAAAAATCATATTGCAAAAGGACACACCTACGCAGAACCATAGCGTAGGTGTGTCCTTTTTTTGTTTAAGGAGGAGAAAGTTATGGGGAAAACGTTATTTATTGCAGAAAAGCCAAAAGTGGCCAATGAAATTATGAAATCGCCACGTTTCCGACACTCACAAAAGTACATTGGTAGCAAACCTTATTACGGTTATTATGAAAATGATCATTATATTGTAAGTTGGTGCCGCGGACATTTACTGGAACTGAAAAATCCGGAAGAGATGGATCCGAAGTATAAAGTGTTTCAGTTAGAACATTTACCTTTAATTTTTCAACCATCGTATAAGGTGATACAAGAAAATGCAGAGCAACTACAAATTCTTGTTAAACTGTTACAGCGACCGGATGTTGACCATGCCGTGAATATTTGTGACGCGGACCGCGAGG # Questionable array : NO Score: 3.58 # Score Detail : 1:0, 2:0, 3:3, 4:0.51, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTAAAACAAAACAATAGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA //