Array 1 62120-63811 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPAI01000023.1 Campylobacter concisus strain AAUH-12CDtra2-a 1100674, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 62120 37 97.3 35 .....................C............... AAAACAATTTTGAATTTTTGCATATTTTGCTCCTT 62192 37 97.3 36 .....................C............... ACTTTATGAATATTGTCTAGTATCCCAGTATTTATA 62265 37 97.3 38 .....................C............... GCTACCGAAATATTCGGTAGTACCAAATTTAGCCTTGG 62340 37 94.6 37 ......................TT............. AAGCTATTTGAATAGCTTCCATTTGACTTTGATTAAT 62414 37 100.0 37 ..................................... TAGCTCACTTGATTGAGCACTTAGCTTTTTAATTTGA 62488 37 100.0 40 ..................................... GAAGTCAAGAAATTTTTTATTGCTTCTTTACCTTCAGCCA 62565 37 97.3 41 .......................T............. TCGTGAACAATTACTGCAGATAAGTATTCAGGTTTATTAGG 62643 37 100.0 41 ..................................... ACTTAAGTAATAAGAAGCGCTTGACCACGAGCGGCTTTGAT 62721 37 97.3 37 ......................A.............. ACTAGTTCAGTTTTGTTCATAATGTATCCTTTTGGAT 62795 37 97.3 38 ......................A.............. TCATCAGTTTCTCCATCAGTCTCTGAGTACTGAATAGG 62870 37 94.6 34 ......................TT............. CCATCACAGCGTAAAAAGCCGTTTGGGATATTTG 62941 37 100.0 39 ..................................... AGTATTATTAAACTAGTTATTATTGTCGCATGTCCTATG 63017 37 100.0 38 ..................................... AGTTTTTCTTTTGTTTGTGAATTAAATTTTGGATTTGG 63092 37 97.3 35 .......................T............. TAAAGTAGGTCACACGCTAGTTGTGGGGCGGTCGT 63164 37 97.3 36 ...................A................. ATCAGCTTCCAGCCTAGATATATGCGGCAGTAAAAG 63237 37 100.0 39 ..................................... TCATCATACTGCATCTCTTGAGGCGCATATTGCGCTTGT 63313 37 94.6 35 ......................TT............. TAAGAGTAGGCTTTTAAATTTATGATAGCAGTCGC 63385 37 100.0 36 ..................................... AAGACATCTCCTGCTTTAATTTGAAGCATAGGTAGT 63458 36 91.9 42 ..................T...-T............. TTTTTCTCCTCAAACATAACACGCTCCTTGTGCTCGCCCGTT 63536 36 91.9 39 ......................TT........-.... TTTATGTAGTGCGTTTTCGGGGCTGTTAAACTCTAGGCT 63611 37 94.6 39 ...................AT................ TTATGAGTCTCATCCATGAGAAATACGTCAAAAAATATA 63687 37 97.3 39 .............................G....... CCATTAGCTCATCATAATCATAAAACTCTGGACTATTTA AAAAAAAGGGGG [63712] 63775 37 91.9 0 ......................TT............T | ========== ====== ====== ====== ===================================== ========================================== ================== 23 37 96.9 38 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : GCTTTGAGCTATGCGATAAAAAAGGTATCTTTGAGGCGCAAGAGCTCTTTGTCTAACTTATGTAGTTCTTAATTTTCTTTTGGATTTTTGATTTGCGAACTTTTTTAGCTGAAATTTGACCCTTTTTGGCTAAAATCTCGCGAAATAGGTTCGCAAATCTAGTTTTTTCAAAATATCTCTCATACATTTGCGAACTTTTAGTTATACCTAAGTTTAGGATAGCCTATTTTAGGACCTTGCGAAACTTATATACCGCTTAAAGTTCGCAAACCTATAAAATTTGAAATTTTTAAAAGAGATTTGCGAACTTTTTTAAGATGACAAATGCCTAAATTTATGGGTTCTTTCACTTATCATTGTTAATTTTATGGAGTTAGTATTTTTAAATACCTATACATTTGCGAACTTTTTTGAGCTTTTCACGAATTTTAGGTATCTTTAAAGCCAGTTTCTTAAATAATTTTGCTAATTTTTCCTTTGCAAAAATAGTCTTTTAGGCT # Right flank : TTTACATTTATATGTAAAATTAAACTACTTTATCTACAAACACTACCATCAACTTTTTCATACTTTTATTTTTTTTGGAAACGCTTTGTCCATATCTATTTTTATAATTGCTGCATATTTACAAAAAAGAGAAACTAATAAAATATAAGAAGAGGAGATATTAATGAAATATAAAGTTGAAAGATACAAACTCATCTGCAAAAACTGCGGAGAGATATACTACTTTGACTACGAAGGATCAGATGTGTTAGGTAGGGACTACTTCGACCAAATAGTAACAGAGTGCTCTAAATGTGGCTCAAGAGTTTTAGAGAAGCGTGATTTAAATTTCATTGACACAGCGAAGATGAAATTTAAAAAGATGTTAAAACCAAAAAACAGCTACTTTACAAGGTGATAAGATGTTACCACTAATAGCAATTTTTACAAGTAGAGCGATAGTAGATATCCTACAAATAGGCGTAATAACTTTTTCAATCACTGTTTCAGCAGCCAAGACC # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-24] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 70508-70851 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPAI01000023.1 Campylobacter concisus strain AAUH-12CDtra2-a 1100674, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 70508 37 100.0 40 ..................................... ACAGCAAATAATGTTTGCTCAAATTGTGTAAATCTGTCGT 70585 37 97.3 40 ....................C................ AATTTTTCACTTTGAGTTCTATGTTTCCATGTAAACTCAC 70662 37 97.3 38 .......................T............. ATTAGCACGACTACCGCCATATTGTATGGTCTTGTTTC 70737 37 100.0 42 ..................................... ATGTTTGTCATATTTGGGTTATCCCACTGGTCGCACTTACGT 70816 36 89.2 0 .............................GC.-...T | ========== ====== ====== ====== ===================================== ========================================== ================== 5 37 96.8 40 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : TTTATAGACTATGTCGTAAACCAGCCATCTTTGAGAAGCAAGAGCTCTTTGTCTAGCTTATGTCGTTCTTAAATTTCTTTTGGATTTTTGATTTGCGAACTTTTTTAGCTGAAATTTGACCCTTTTTAGCTAAAATCTCGCGAAATAGGTTCGCAAATCTAGTTTTTTCAAAATATCTCTCATACATTTGCGAACTTTTAGTTATGGCTAAGTTTAGGATAGCCTATTTTAGGACCTTGCGAAACTTATATACCGCTTAAAGTTCGCAAATCTATAAAATTTGAAATTTTTAAAAGAGATTTGCGAACTTTTTTAAGATGACAAATGCCTAAATTTATGGGTTCTTTCACTTATCATTGTTAATTTTATGGAGTTAGTATTTTTAAATACCTATACATTTGCGAACTTTTTTGAGCTTTTCACGAATTTTAGGTATCTTTAAAGCCAGTTTCTTAAATAATTTTGCTAATTTTTCCTTTGCAAAAATAGTCTTTTAGGCT # Right flank : TTCCATAATCCATATATAAATTTAGGCCATTTCACATACATAAAAAGTTGTATTTTATTTTTGAGACGTATTATGATAATAGTGCCATCTATCAAAAGAAACACCAATCTACAAGCAAGAATTGTAAAGTCAAAAAAGATCTATATAAGAAAGCAAAAGCATTCAAATTGTCCTAAGCTCAAATAGTCTATTACCAAGAAACACTATGATGCCTACTCAAATGTGGTCCAGTATCTCTATCCGTTTCAAGTGTTTTAAGTGGATTAGCCAAAATAGTATCTAGCAAAGATAGAGTCTAGTCGTCAGCACTTTTTATCGTAAAAAGTATTTTTCGCAATTATTTTTTACACCAGTGATATTATCATTTATAATAACTTTTGAGCAGAAATATTTTAATGTGAGCTTGGCATTTTTAAAAAGGTAGTTTTTATCTTAATATTTAACGTCTAAAAATAGGTGCCATATTGGGTGCCATCTACTTAAGCATTATTAGCAATTTT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.79%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //