Array 1 62850-63044 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGXP01000011.1 Staphylococcus aureus strain UC334 contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ============================== ================== 62850 26 100.0 29 .......................... ATTGCTTGTAGAATTTCTTTTCGAAATTC 62905 26 100.0 30 .......................... ATTGTCTGTAGAAATTACGGACCCAATTTC 62961 26 96.2 30 ................C......... GCACATTATTGTAAGCTGACTTTTCGTCAG 63019 26 84.6 0 ...T.................TAA.. | ========== ====== ====== ====== ========================== ============================== ================== 4 26 95.2 30 TCTATGTTGGGGCCCCGCCAACTTGC # Left flank : CGAAACAATACTTTATCAATGCCTCAACTGCTTGTGTCATAATCCCATGACCCTCAAATTCTTTATCTAAATAGTACCCTAATGAAGTTTTTCTGTGCATGTGATTAATTTCATGTAAACCGATGACACCAACTAGCGTTCCTTCATACCAAATGCCACACTGAAATCCATTACCATCAGCAAATTGCAAAAGTCCTCTTTTAATAAATGCACGCGTATCTGATGGTTGCTCAGTTGCATCTACCCAAGGTAACCATTCCCTAAGTGAATTTCTTGAACGATTGACTAAATTGAAAAGCGCTTCTGTGTCATGAGCTTCTAAAATTTTTAATGTTATTTGTTCATTCACTTTCATTCCAAACATACCATCACATCCTCATTCATTTTTCATATAATTCTGTAAATTATCATTATAATAACATATTAATGTTACGCATTGTATCTTAAATTTGTTGTCCTTCCCCAACTTGCATTGCTTGTAGAATTTCTTTTCGAAATTC # Right flank : CGTTGTAGTGCCTATTACTTTGATTGATGTCCAAGTTTCCTATCACACAACTTAATTTAATCACTACTTTATTATTCATTCCAAATTTATATTTAAAAATACGACAAAACAGTGCTAAAATGCTATTAAAGGAGGCACTGCTCATGGCATCATTGAAAAATAAGCATTTTATGATTGGGCTATCACTAACATTTATAGTCGCATTATTTAGCTTTTTAGCAGCTAAATTGCCAATCCTAGATAAGGTTGGCGCATTAACTATCGCGATATTAATCGCTATTCTATATCGTCACTTTAGAGGATATCCTGAACAATATAGCTCAGGTATTACGTTTTCATCTAAATATTTATTAAGATTTGCAATCATCCTATATGGACTTAAACTCAATATATTCGATATTATCGGTCAAGGTAGTAAACTATTAGCCATCGATGTAGGTGTCGTTATTTTCAGTATTGTAATGATGCTCTTTGTCAACAAACTGTTGCATGGTGACAAA # Questionable array : NO Score: 2.62 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTATGTTGGGGCCCCGCCAACTTGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 199189-199386 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGXP01000005.1 Staphylococcus aureus strain UC334 contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ============================= ================== 199189 27 92.6 29 .A.....................C... AGCTGACAGAAAGTCAGCTTACAATAATG 199245 27 100.0 28 ........................... GAATTTCAAAAAGAAATTCTACAGACAA 199300 27 96.3 29 .......................C... AGGTGACGAAAAGTCAGCATACAATAATG GGAA [199310] 199360 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ============================= ================== 4 27 97.2 29 TGCAAGTTGGCGGGGCCCCAACATAGA # Left flank : AGCACTTTGAAATCGATCCTGTAGAACCAAAATATTTTGGGGAAGTAGCAAAATATTATCGCCATAAGGATAATGGTGTTCAATTTGGTTTGATTACAAGTGTTTCACAATCATTTTGTTCTACATGTACACGCGCAAGGCTGTCATCAGATGGGAAGTTTTACGGATGTTTATTTGCAACTGTCGATGGATTTAACGTTAAAGCGTTTATTCGTTCTGGCGTGACCGACGAAGAATTAAAAGAACAATTTAAAGCTTTATGGCAAATAAGAGATGATCGATATTCAGATGAGAGAACTGCTCAAACAGTTGCCAATCGTCAACGTAAAAAGATAAACATGAATTATATTGGTGGTTAATGTGTAGGGACCACTACATATTAAATCATTAGAGATGTTTTAATATTTCTGTCTTACTCCCTAAAATACAATATTATTTATTAAAGTAAAAACGGTCATATCTATGCCAGATTTAATAGAAATGATCGTTTTTAAAGTTTT # Right flank : AGAATTTCAAAAGAAATTCTACAGACAATGCAAGTTGGGGATCAACGAAATAAATTTTATGAGAATATCATTTCTATCCCACTCTTAAGAATCACTACATAATAAATCTTTAGTGGTTCTTTAACATTGATGTCACACTCCATGCCATTGAGTTGTAATATATCTTTTTTAGGTATAAATGTTGTCGAATAAACAACAAGTTGTCCAAAAGATATAAATCTAAACAAGATATAGCCAGCAATTTAATATTTGTAATAGATAAAATGCTAAGTTTGATATATAATAAATTTAAGTAATTGTATAATAATATGAATTACAAACATCTAAGAAGAAACATAGGAGGCATCATATTATGAGTAATAAAGTTCAACGTTTTATAGAAGCAGAAAGGGAGTTAAGTCAGTTAAAGCACTGGTTAAAAACAACACATAAGATTTCAATTGAAGAATTTGTAGTCCTTTTTAAAGTGTATGAAGCTGAAAAGATTAGCGGTAAAGAAT # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGCAAGTTGGCGGGGCCCCAACATAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //