Array 1 289410-288901 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYTH010000002.1 Pectobacterium quasiaquaticum strain A398-S21-F17 P._quasiaquaticum_A398-S21-F170_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 289409 28 100.0 33 ............................ TAATTATCAACGTCCCTCCGGGCGGCACAAAAA 289348 28 100.0 32 ............................ ATCGTGTCAGAATGCTTATGAAACCGCCTATG 289288 28 100.0 32 ............................ TCTGCAATTATGCTCATGATATCGCCAGATTC 289228 28 100.0 32 ............................ AGACCAAGAAATTAAAATTATCATGCGGATTT 289168 28 100.0 32 ............................ TTGCACAGTGTCGATTGGTGGCGTAACGGAAT 289108 28 100.0 32 ............................ ATCGCCAAACCGCTCTTGAATCTGCCTGTCAT 289048 28 100.0 32 ............................ TTGCAACATCTCAAACCAAATACGGGTGAAAT 288988 28 100.0 32 ............................ GCTGCCCATGCGGGCGTGGGCTTCGGCAAATT 288928 28 78.6 0 ......................CGCTTT | ========== ====== ====== ====== ============================ ================================= ================== 9 28 97.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATCCTGGCGTTCTGTCATAAAGTCAGCGTCAGCGCGATCTTCTTGCAAAAACGACTGCCAATTGGGTTTGACCGGACGCAACATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTAACGCCTTCAAAGTCCATATCACGTGGCAAACGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGATGCACCTCCTCCTTAATACAGAATTCAGCCAGCCACTTATCGTTTATTATTGCTGGCTACACCATAGGCTAAGTATAGATATTAATCACTCCACTGCATATTCATAGCATATGCAGATACCTAATATAGGCCTATCGACGATAAATAAAATCTTTGTCATACGTTCATGACCCCTTTTTTTACGCATCGTCGTAACTCATTGATTTTTAATTTTGATTACCTGTCCTGATAAAAAAGGGTTTTTCGGGAAAAATGGTTTATTTCCTTTTAAAATGAGTCCACTACCGTAAAATACGAACA # Right flank : TTATCGGGATACGTCACTGGCGCGACGCATTTCGTGGCGTTATTCCCCATTGAGCGTGACAACCAGTGAGCGGCTGCCGCCGTGGTTGCGGTGCTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGGCTGTTGCCGAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATAGGTATGGCGGTAATACGGTTCATCCTCCGGCACTAAGCGATTAAAAAAGCTCTCGAAATCCTGCCGCACCGTAGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGCTTGATGAATACCTGCATCAACCCGACTTTTATCTGGCGCAATGCGACAACCTGCGCCAGTATTTCGTCGGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATCGGCGTCCCCTGCTATCAGGCTTCACGCGCCAGAATCGGTC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 298862-300813 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYTH010000002.1 Pectobacterium quasiaquaticum strain A398-S21-F17 P._quasiaquaticum_A398-S21-F170_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 298862 28 100.0 32 ............................ AGCAACACCGGCTACCAATCAGCGGCCAGCAA 298922 28 100.0 32 ............................ AGTGCGCGTTAATCGCTGCTAACCGCGTCGGT 298982 28 100.0 32 ............................ GTTTTCTGGCGATTCTTCCAGCATTGCGATGA 299042 28 100.0 32 ............................ ACGTCGACAATAAATTCGGATTGTAACGATGC 299102 28 100.0 32 ............................ GCGTCAGGCTGCTTCAGCGCCTGCGTAACGAC 299162 28 100.0 32 ............................ TCAACGAAACAAATCGAGGATGATAAAATGAA 299222 28 100.0 32 ............................ GGAAGGATTTAAGGTGTATCGAGAAGTAGATT 299282 28 100.0 32 ............................ AGAAACACAAAACTGGTACTCAAAACTTCGTT 299342 28 100.0 32 ............................ TAATAGAAATGTAATGATCGTGATAGAACTCA 299402 28 100.0 32 ............................ TCAGTGGTTAAAAGACTTTGTGCGAGACTCAT 299462 28 100.0 32 ............................ TCATAAATTTAATGATGGTGAATTTAACAATC 299522 28 100.0 32 ............................ TCAATCGCTCTGTGACGAGATTATAACCTCAT 299582 28 100.0 32 ............................ TACTTCGTCTGTCACCCTCACAACTTCTTTTA 299642 28 100.0 32 ............................ GCTGTAATGCGGCACTATTTATTGATCGTGAG 299702 28 100.0 33 ............................ CAAATGGATATTCGTACCGGAGTCTAGAATAGA 299763 28 100.0 33 ............................ TTGACAAAAATAAAAATCATCAATGCGGAAAAA 299824 28 100.0 32 ............................ AGTCGCCGACATAACAAATAACACGGGATAAA 299884 28 100.0 32 ............................ AGAATAATGGCTACTATTCGATACGGTACGAT 299944 28 100.0 32 ............................ TGTTTCAGCCATGCCACCAGCGCATTCTTTCC 300004 28 100.0 32 ............................ GATTCCCATGCGTTCATGTCTCTGTGTAATGC 300064 28 100.0 32 ............................ ATTTCGGCGGGGATGGTTTTCAGTGTGAACGT 300124 28 100.0 32 ............................ GCTGAGCAGATGAAGATTGTTCAGGATGGTGA 300184 28 100.0 32 ............................ ACCAACAGGCAACTGACCACACAAGCAACACG 300244 28 100.0 32 ............................ TTTAAATCCATCTGAACTTGGTCAGGGTCATC 300304 28 100.0 33 ............................ TTATGTCAACCTTTGTCTCTGATTCGACAAAAT 300365 28 100.0 32 ............................ AAACCAATGATTGGATTCTTTTGCGAACCTTC 300425 28 100.0 32 ............................ TTCTGGGGAGCAGAAACCACAGCCAACACCAA 300485 28 100.0 32 ............................ AAACCACAACATGCCAGCACTACAGAATATAG 300545 28 100.0 32 ............................ AATGTGAAAGAGGCTTTACAGCCGCCTTGCGT 300605 28 100.0 32 ............................ AGTGCCGCGCAGGTAGAGGTAACCGCCGACAG 300665 28 100.0 33 ............................ TACCGACGGCCATGAACCACTGGATTTCGCTGG 300726 28 100.0 32 ............................ CTTTTTCGATGATGAATCAGGATGGTTGGCAT 300786 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 33 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGTGACGGAGGTGCCGGTCCCCAGCATCACAACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGATTTCCCTCTTCCGTAACATATTCGACACGGCCACCGTTGACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATCATGTATTTTCTGCCGTAATCGATAATAACGGTGACGCCAGCGGAATAAATCGCAGGCTAACTATTTGATAAAGAAAAATATAATCGTCAAGAAAACTAACGAAAATCAGACTATCACAAATATTCTGGGAAAATGGTGGCTGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGCCCATTTCACAGGTTTAATAATCAATGAGTTACGACTAGGCTGAAAAAAAGGGTTTTTGCGGCGAAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTAATCGGGCTTCT # Right flank : AGTGGTAATGGCTTAAAAGCGTTATTTTCATAAGGTATTCTCTTTTGAGGTCACGCATTTATGCCAGCCACGATCAACGTTGCCTGCCGACATTGCCAGCAAACAGAACCCGTCCGTAAGTATGGTATAGGAAAGGCAGGATTTCCCCGATACTACTGTCAACAATATGGTTTTTCACCACCGATGATTGGGGGCGTTACGCACGAGAAACCGAGTCAGAAAAACACCTGACAGGTAAGCTATTCACGCAGAGAATTGAGCGGCATAACCTTCATTTACGAATTCACATTAAACGTCTGGCGAGGAAAACAACCTGCTTTTCACGCTCATTTGAAATACATGAAAAGTCATCGGTACTTATATTGAAAAACACCATTACAACGCATTTGCGTCATGACTCGTTTATTTCTCGCCAGTTCAGCCAGATTCGCATATCAAATTCCAACTGGTGATAATCAGGGTCCATATGGCAGCAGAGTTGGTAGAAAGCCTTGTTGTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 305621-304487 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYTH010000002.1 Pectobacterium quasiaquaticum strain A398-S21-F17 P._quasiaquaticum_A398-S21-F170_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================== ================== 305620 28 100.0 32 ............................ TGCCAGAAGCGCACAACATCAGTAAGAAGCAA 305560 28 100.0 33 ............................ CGCGAGGCAGGTTAAACTAGAATCAATGCCTGA 305499 28 100.0 32 ............................ GGTCTACGAAGGCCCACTGAGCGAAATTATAC 305439 28 100.0 32 ............................ TTCGCTGTAATAACTTGTCCCTCCAGGGCTTA 305379 28 100.0 32 ............................ TTAAAAATCTAACCGGAAACACAATAAACGTA 305319 28 100.0 32 ............................ AAAAACTATGATATGACCTGGCCGGAGTTCAT 305259 28 100.0 32 ............................ GGGAATAGCCTGTGCATACAATACCCCAGACT 305199 28 100.0 32 ............................ AGCACATGATGCTTCAGCTTGTCGGCGTGCCG 305139 28 100.0 32 ............................ GCAAACCGCTGCGGAATTTCTACCTATTCTGC 305079 28 100.0 32 ............................ GTAAAGACGACACACAGGACCTTGGATGGATT 305019 28 100.0 32 ............................ ATAAGACCATCCGCCACTTGAAACATCTAATC 304959 28 100.0 32 ............................ TGTCAAGCCTATCAATGAGCATGCCGTTGGGT 304899 28 100.0 33 ............................ ATAAACGGTGGTATGCCGCGCCGCGCTCAAGTG 304838 28 100.0 56 ............................ NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 304754 28 67.9 33 NNNNNNNNN................... ATCCAGACTATCCAGCAATGCTAAATTACACAT 304693 28 100.0 32 ............................ GCGATACGATCATTTGTCAGGCCAAGCGCCTT 304633 28 100.0 32 ............................ TTAGGGTTGTAGAATCCCCTGAGCCAGTGATT 304573 28 92.9 32 ...........C.C.............. GTTGCATTTCAGCCAACCAGACGGGGCGACGG 304513 27 89.3 0 .........-...C........A..... | ========== ====== ====== ====== ============================ ======================================================== ================== 19 28 97.4 34 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TCCTGACGTTCTGTCATAAAGTCGGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGTTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGCACCTCCTCCTTAATAAATACATAAATTCAGCCAGAGACTTACCGTTTATTATTGCTGGCTAAAACATAGGCTAAGTATAGATATTAATCACTCGGTTGTATATCCATAGCATATGCAGATACCTGACATAGGCCTATTGTCGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTACGCATCGTCGTAACTTATTGATTTTAAATTTAGATTATCAGCTCTGATAAAAAGGTTTTTTCGGGGAAAATGGTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAACG # Right flank : ATTAAACGCGCCGAAAATCAACAATAAAAAACTCATAGGCAACGCGACCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGACTTCGATCTGAAAATCCTGACGCTGCTACAGACCAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAGCAGGCACAGCTGATTCTCGGCTATCATGCCCGCCTGTCGCCGAACGCGGTCGGGCTGGAATGTCTGGGGTTAATTGAGGTGCGACTCATCAATCACACCAGCGAATACGTTGAGCGCTTTCACCAGATGCTGGGAGAAGTGGACGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTGGCCGATCTGCCCGGACTCAGCACCCTGATTAGCCAGATTCTGTCGCAGAACAAGAGCGT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //