Array 1 345794-347346 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031195.1 Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 345794 36 100.0 30 .................................... TAACTTGGCCAAAGGAATCCTGACCAATAA 345860 36 100.0 30 .................................... TAAGTCTAGTGTGGATAAGCCTAAGCCAGC 345926 36 100.0 30 .................................... TAACGTCGTTGGTTAATAACCCCATGCTCG 345992 36 100.0 30 .................................... GCAAGTAACTACCGAAAAGGTATACCAAGA 346058 36 100.0 30 .................................... AAGATCGCACAGTGGCGGCACGTGAGATCA 346124 36 100.0 30 .................................... ACAACGATGAAGAAGTTATCCACTATATTC 346190 36 100.0 30 .................................... CTACGATGATTAGGCCATCTTCGGTGACCG 346256 36 100.0 30 .................................... GAAGAAAGCGGGTAAAATCATACCTTTTAA 346322 36 100.0 30 .................................... TTTATTTTGTGCAATAAAAAAGGCCGCCTT 346388 36 100.0 30 .................................... GGGTAAAATTCCCCGAGCTATGAACGATAA 346454 36 100.0 30 .................................... TCGATGATATTTTTTTGCCTACAAAGTCCA 346520 36 100.0 30 .................................... AACGGTTTTCATATGACGACCAATCTTATC 346586 36 100.0 30 .................................... CTGGCCTGGCATGGACACAGACGATGCGAT 346652 36 100.0 30 .................................... TTGGCAAGAGGACGGGATTAAGTACTTTAT 346718 36 100.0 30 .................................... ACGACAGCTAACGTTAATGTTCAATCGTCT 346784 36 100.0 30 .................................... CCACCTTTTCGTCAACGAATGGGCCGGTCG 346850 36 100.0 30 .................................... AGATTGGAAGCCAAATAAGCAACCTGACCA 346916 36 100.0 30 .................................... CTAAAACGCCACTATAAGCAAAGCAATGGT 346982 36 100.0 30 .................................... TCTGAATCATCGATATAGGTTTGTGACGTC 347048 36 100.0 30 .................................... CCCAGCTCGATAAGGCAAAGCAAGAACTCA 347114 36 97.2 30 .................................T.. ATACTGTCTGGCAGGATGGCTATGCTTACT 347180 36 100.0 30 .................................... TGAAAAGCTGAAGTTGTTAAAGTCCTCTCT 347246 36 100.0 30 .................................... TAAGGTTGTTGTTTCTATTCCTATTAACTA 347312 35 80.6 0 ...........................-.TATT.TT | ========== ====== ====== ====== ==================================== ============================== ================== 24 36 99.1 30 GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGCAC # Left flank : TAATCCAACCAAACTTGATAGTTACCAAACGTCACTCGATAAGATGATTGTCAAAAATCTTAGTATCGAGAAGCAAGATAGGATGAATGACCTTGCTCGTGAGATTTACTCAGAAATGCAAGATTCCCTGTTCGAATTCGATTTGCCATTGGAGGTCAGATATGACGAAAGTCTTTTGAGATTATACAAATATGCGAAAATCAAGTATTTGACGCAAGTAATAAGGCAACCTTATGGTATAATTGAAACCGATCTAAAATTACATCTCGAATTAAAGGACTGTCAGGTTCTTGGGTATTGTAATGTCGCTAATTACTTATTACCTGAGCAGATACAGGAATTCGCTACTCTTGTTGAGAAAACCGAATTGGCAGTTTTATTAGTAGAATTCTCAGAAAAGAGAGAAACTCTACAACAACTCAAACAGGATATTTACCGGATTGATCGGGACTTCGTGGACTGGCACGAATAGACCGTTAGTTTTTAATGAGAAAACAACG # Right flank : TAGAATTATAGACTAAGGGCGTTGCTGTTTTTAGCAATGCCTTTTTTAGAAGTGATGAGGGAAAGGTAAATGTTTTCACGTTGGTAATCTGACGGGAACTTTAGTGGGCGATGTGCTAGGATAGGGCCAAAATGATTGGAAGTGTTTGCCATGCAAATTGATCCCGAACGGATTCGCCCCGAACTGCGCCGAATCGGCAAGGTGGGGTACGCAATCAACCTGATGGCCAGCCCGCACGCCTGCAACGAATGGGACGAATAACGGCGAAGGCGAAAATGCCCATTCACTCGCGGCGGGTGATCAAACAAGACGTTTGGATTGAACGCCCTGACCATAGCAAGCTTCGGCTGGCTATTTTCCGGGCCAAGCAAGTTGCTACCAAGCGCCCGGCCACCGGGATCCTCTGGTTGCACGGGGGAGGCTACGCCTTGGAAACCGCCGAAAATGCCTTGGTTTATGCTGAACAGTTGGTGGCTGACGGACGGTCCGTGATGGTGGCG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 828635-826471 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031195.1 Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 828634 29 100.0 32 ............................. CCAGTTTAACCTGGTTGTCCGCAACGACTTAG 828573 29 100.0 32 ............................. AAAATATTTCCCGCGTCAACGTTAATCATGCT 828512 29 96.6 32 ............................C AAGTACCAGCACGAAGGGTGGACGCTTTCCGA 828451 29 100.0 32 ............................. TGAGTGGCATAGCCCCCATTGGTTAAAACTTT 828390 29 100.0 32 ............................. TCTAGGAGGCAATATGAAAGGATTAAATTTGC 828329 29 100.0 32 ............................. CAAATACAGCGTATCCTTTTGTGACCGGCTTA 828268 29 100.0 32 ............................. AGTAGAGAGTTTGGCCGGGATAGATCAGGTTA 828207 29 100.0 32 ............................. TGTGATCTGACGTATAAGTATAAAGATGATCT 828146 29 100.0 32 ............................. AACGGAAAGGAGGGCCAAACGATGCCCAAAAG 828085 29 96.6 32 ............................C CGTTATAACTTTGTCCGGTTGAAAGGCCGGAG 828024 29 100.0 32 ............................. AATGTGCTACTGTTTGATATTTTCTACCTTAA 827963 29 100.0 32 ............................. GCACGTGATTTATTGGAGGGAGCGTTTGACGA 827902 29 100.0 32 ............................. ATCGGTGGTAATGATCAATACCAGTTAGCTGA 827841 29 96.6 32 ............................C GACAGCAATCAAATCTTTATTGAGGAGCACCG 827780 29 96.6 32 ............................C TGCACTCGTCAACTCACAAGATCAGACGATTG 827719 29 100.0 32 ............................. CACGTTGGAGCCATCTAAAATCTGTAAGTAAG 827658 29 96.6 32 ............................C AATCCGGTAACCACCAGATTGATTACGGTTAA 827597 29 96.6 32 ............................C AGGTAAAAGCTATATGATGTCAGAGAAAGGTT 827536 29 100.0 32 ............................. AATGGTGAAATCCCATCTTTCTTAGAACAGGT 827475 29 100.0 32 ............................. GGGGAAGCTTGGCCGGGTCAAGGCTGGTAAGA 827414 29 100.0 32 ............................. AGCTAAAAGTAATATTAGCTTGTGGGCTGATA 827353 29 100.0 32 ............................. AATACCAAGAACCGGGCCAACAATAGAAATAT 827292 29 100.0 32 ............................. CGATGCGTCAGGATAACCTTCGATTGTGCCGA 827231 29 100.0 32 ............................. CAATCCCTTAACGGCATTAACTACTGTGGCGG 827170 29 96.6 32 ............................C TATCTTTTCTCGTGCGTAGTCTCTTGCTAGTA 827109 29 100.0 32 ............................. AGCAGCTCCTTCACCCACATCGTGCCATACGG 827048 29 96.6 32 ............................C GTTCCAGACTGCTCATGTGTGGTTCTGCTCAG 826987 29 96.6 32 ............................C ATGGGTTTGAAGTTAATCAAGTAGCAACGGAA 826926 29 96.6 32 ............................C CACGGCGTTTATGAAATTGCAGAAAAGAACAT 826865 29 100.0 32 ............................. AAGCTTCCTGGCCACGGTAATATTTGGAACGG 826804 29 96.6 32 ............................C TACATACGGCCGCCACCGTTCTACTCCAGAAC 826743 29 96.6 32 ............................C GAACAGCCGGCAGACGGCAACGTCACGCTATG 826682 29 96.6 32 ............................C TCACGACACGCACGCCGCTCAGCGATAGGATA 826621 29 100.0 32 ............................. GTTGCCCGCCAGATTGGCACCACACCATACAA 826560 29 96.6 32 ............................C CGTTGATCCGGCGCCGCTGTCGGCAACTCGGA 826499 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 36 29 98.7 32 GTGCTCCCCATGTATATGGGGGTGATCCT # Left flank : CGACGTTGGTCTTCGCCATGAACGAATCTTGGCAATTCTTACATCTCAGGCGTTGCTTACCGATCCGCAACATAGTGGGACAACTTTCGTTAATTGAGAGGTACTTAATGGTTTGGTAAGAATGGCCATTCTTAATGAAGGTATCCGCAAAGCCGCAATGTGGGCACCGATCCAATTTAAGCGAGACCGTCCCAATGAAGACCTGCGTCTCCCATCCGTCATTATTTTCAAAGACAACGTCTGTGAAATGAAGATTGGGGTCTTTAATTTGAAGGATATTTTTAATATAATCAGTCATAAGGTCACACCTCTTACTTTCTGGAATTTGCGTGGTAGTTAATGATCAGAATTTTAAGGCTGGTGGGGCCTTTTTTTGTGCCCTCAAAACCAAAAAATCCTGTCAATGAATCACCACTATGGTAATCCATCAACAAGATTTAGTGTAGAGCCGTATATGGGGGTGATCCTAAAATAAAATATTTATTGCCCAAGCCTAGCTA # Right flank : TCGTTGCCGATAAGTTGAACATGTCGCAGGCGGTACTGTACCCTGTCAAGTTGACACATTAAATAATAAGAACTAGTTGGCCTTGCCGAATCGGTATTCTGCTGCGGTAAGGTCATTTCTTTTGCCTGAAATAAAGGAATACGTAAAGTAATCGATACCTTCTGTCACCAGCTGTTCTAAGTCTTCAAACGTTTGTGGTTGTGGTGAGTGTGCTAACCGGATAGATTTAAAATCAGCCCACCAGTGCTCCATCACCGCATTATCAGCTGGTGTTCCTGGGGCTGAGTAACTATGTTGGCTGTTATTACTAGCCAAGTAGTGGTTAAATGCTTTGGCAGTATATGCTGCTCCGCGATCAGTGTGGATTAGCGGTGCCAGACCTCCGGCTTTCTGCTTGGCCATTTGAAATACTTTAATAGCCCCAGTACTCGTTTCTGTAGGCGTAATAATCCAGCTAAGTGGGTATTGACCGTATAGATCCAGGAGACTGGGCCTAGAAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCATGTATATGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 831153-830146 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031195.1 Limosilactobacillus fermentum strain LDTM 7301 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 831152 29 96.6 32 ............................C CGGGCGATGTAAGCCTTCTTTCCCTTGCGAGA 831091 29 100.0 32 ............................. ATGATGAAGTTTTTATATTCTCGTCGAAGCGG 831030 29 100.0 32 ............................. AATGTTGAATTATTAGATTCTTGGTGGCTTGT 830969 29 96.6 32 ............................C AAATGGACTTAGCAAAATATGCTGGGGCAGTC 830908 29 100.0 32 ............................. CACGTCCTTCAAACGTTAAATGCCATCCCACA 830847 29 100.0 32 ............................. ATCGCGTCAATGATCGAAGAATTGAACACCGA 830786 29 100.0 32 ............................. TCCTCAGCTTCAAGTTTGAAAATCGGAAAAAG 830725 29 96.6 32 ............................C CGTGTTTCCGGCCCTAACCCATCAAGCAAGGC 830664 29 100.0 32 ............................. GATGATCGGTAGTGAAGCCACTGCCACCGCTG 830603 29 96.6 32 ............................C TTAAATGATTACAAAGCACCACAGCTTGAGGT 830542 29 96.6 32 ............................C TAAAATCATCTTTGACGGGTTTAACGAGATGG 830481 29 100.0 32 ............................. TAAAACGGTATAATGAAGGTGAAAGCCAAATT 830420 29 96.6 34 ............................C GACCCCCATTACGCCCTTTGATTTGGCGAGTTGG 830357 29 96.6 32 ............................C TACCAGTCTCGGCAATTTGCTTGGCGGTTTCG 830296 29 100.0 32 ............................. GCGTTGTCCAAACACGTTGATAGTGAGGACAA 830235 29 100.0 32 ............................. ATTTATAAGCATTTTGGGATCACAATCGGGTT 830174 29 82.8 0 .....................C.CT.TG. | ========== ====== ====== ====== ============================= ================================== ================== 17 29 97.6 32 GTGCTCCCCATGTATATGGGGGTGATCCT # Left flank : GCGACTGACGAAATAATATCGATAGGGGCAGTTAAGTCAACCAAGGGGAGAGGGCTTGAACGATTTTATCGGATCGTCAGAACTAGCAAGCAAATTCCTCCTAAAATTGTTAAATTAACGGGACTTAACCAACGAAAGGTTAATCAAGAAGGAATTAGCTTAGAAGCTGCCCTTACGGATTTCAAAGATTTTATTGGGCACGCAATAGTGGTTGGTTATAATGTTGCATTTGACTGGGAATTTATCGAACGAGGGTATGATAAAATAGGACAAGATCGCTTAGGTAATCGAATTATTGATTTACTTAAAGTGGTTAGGCAAAAGGAAGTCTTTTTGGATAATTTTCGCTTTGAAACGGTTCTAAAATACTACCAAATTGAGAATCAGGATCAACATAATTCACTAGCGGACGCCGAGGCATCGATCAAGCTCATGACCAAACTGATTGAAAAAGGGTTTTTGAAGATTTGAAAATCGCTTGGTTACAGGGATCTTTTAAT # Right flank : CAAATCCTGTTGATGGGTCATTTTAGGCGGCGGCCGGTGCTTGCACCTGGCGCCGCCTTTTTTCAGCTTCCGTTCCCATTTGATGCAATCGGATCCGGGCGATGAAATGACCAAAGTTAGTAAAGCCATATGCCGTCCGTTGAATTAACTTGATCATGCGGTTGATCCCCTCAACCCGACCGTTTGAGTACGGTAATACGGTTGCGTTGTACACTCCTTCGCTGTTCTTACGGAGGGTCTTAAGAACCGTTTGGAACGGCGCTGGCACGTCCCATTTGGTGAACAAGAGGTCCATTAATTGGTCAACATCGTGCTCTTCAAGAGCGGTCATGGCGCCCTGTAAGAGTTCATAACCGGCCGCTAACTGGGGATCAAGGTCCAGGCCAATTCCCACCCGTTCGGCCATCGTTACCTTTTGTCGTAAGTGGCGATCATAGTACTCCTTAGTGTAGTTAAGCGATGTGCTTTTAAGTAAGTACAGTCGCCACGAATTCTTCAAT # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCATGTATATGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //