Array 1 9602-136 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWT010000100.1 Tychonema sp. LEGE 06208 NODE_100_length_24234_cov_12.5392, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================== ================== 9601 37 100.0 33 ..................................... TTTAAAAATTAGAGCAATCAAGGCAGATGTTGA 9531 37 100.0 32 ..................................... TGTGCGGGCTTTCATGTAAAAGTGGAGGCTCG 9462 37 100.0 34 ..................................... TCCCGTGCGACTGTTCCCCTACTTCGGCCGCCAG 9391 37 100.0 39 ..................................... CTAAATATTTCGCAGATTCCTTTGGAGCGGGAAAGTCAC 9315 37 100.0 43 ..................................... GTAATATTTCTTCTCCTCAGCAGCTTTTAGCTTCTCCTGCTAA 9235 37 100.0 34 ..................................... ATTGCGGAGTTTGATTTCGCTCCCAACTTTAAAG 9164 37 100.0 41 ..................................... TTGGGGCAACACCTTTATCCTCTCCTTTGGCCGCTCTCCAA 9086 37 100.0 33 ..................................... GGGGAATCTTTTGTAATTTAGGCTCCCACAAAA 9016 37 100.0 34 ..................................... AGCACTGAACTATTGGAAGAGTTGAGGAAGCAGG 8945 37 100.0 34 ..................................... AAGTTCTGCCTGCTCTAACAAATCGGTTGCCTTC 8874 37 100.0 33 ..................................... TAGTAACAGATTTAGCTTATGAAACAGAAATTG 8804 37 100.0 37 ..................................... TTCCTAGCGTTGAGGAGGAATAATGACAGACCAAACT 8730 37 100.0 34 ..................................... CAGTAAGAGTTTCAGCGTTAAACTGCAAGAAGTG 8659 37 100.0 33 ..................................... GCACTTGTGGTACAGAGGAGCGCAGGACTCTGT 8589 37 100.0 38 ..................................... GCGATTAGCAAAAGCTGCATAGGCTGAAATTAATTCCC 8514 37 100.0 34 ..................................... ACTGGAGCTGCTGCGGTTGCATTGTTCGCCCCCT 8443 37 100.0 33 ..................................... GTCTGCCAGCAATTCCGACAGCAAATTTTTCAC 8373 37 100.0 36 ..................................... TAGTGCCGGCCCCTCCAGCCGGTAGTGGAGAATTTT 8300 37 100.0 37 ..................................... TTATTGATAATAAAGTGACGCAACACGATCAATTTTA 8226 37 100.0 45 ..................................... CACTCACAAAAACCAGACGGCAGAAGAACGAGAGCAGGAAAATAA 8144 37 100.0 35 ..................................... GACAGTGTAAACACGTTGGACTGGACTAATGATGG 8072 37 100.0 34 ..................................... AGTGCAGCACCGCTGAGCACCCACATTTTTAACT 8001 37 100.0 36 ..................................... TCAGGAGTTGGGGCTGTTTGACTTTCAGGAGAGTAA 7928 37 100.0 33 ..................................... CCGAGACTTACAGTGCGGACATTCAAAAGTAGA 7858 37 100.0 34 ..................................... GGAAGTTTCCCCCGCTACCTTCGGGGGGTTTTAC 7787 37 100.0 32 ..................................... TTGGCGTTATTCGAGGCTTACCAGCCAGGGGA 7718 37 100.0 38 ..................................... ATTGGAAGCCAGCACTTAAAAAAATGGGGATCCCTTAC 7643 37 100.0 36 ..................................... TACAAGGATTCACGGCGTTTGTGACAATTTATCCTG 7570 37 100.0 33 ..................................... TACACCCCCGAAAGTTTTGCCGCTCTCTACCGA 7500 37 100.0 41 ..................................... TATGCTGTTGCCCAGAATTTTCAGCAATTGCTGAAATCTTA 7422 37 100.0 39 ..................................... CTTCCGGACGATCGCAACACTTAACGTGCGTGATATCCG 7346 37 100.0 33 ..................................... TCTTTGGTGGCAATCGGAGGTTTTTCTCGCAGC 7276 37 100.0 35 ..................................... TATGGCCTCCCCTCCCGGCCGCAATATTGCCCGCT 7204 37 100.0 37 ..................................... TCGGCTAACAAGAATTTTGCACAATTTTTACAGATTA 7130 37 100.0 33 ..................................... GACAAGCTATAGACAATTGCTAGACAAGCTGTA 7060 37 100.0 33 ..................................... TCGGGTAAACGATGCGGCCGAATTTGGACTCGA 6990 37 100.0 34 ..................................... CCAATGCACGGCTTAATTCAAGGTATCGCGCTGG 6919 37 100.0 40 ..................................... CGATCGCAACTCCGAAAAGAAACCGCTGATCGGGAGTCGC 6842 37 100.0 39 ..................................... ATCACCATCACCCTTGACGAACGGCAACAAAAATTCATA 6766 37 100.0 34 ..................................... TGAAAACTTTACAATTCCGGCTTGACACTGCCGG 6695 37 100.0 36 ..................................... TTTGGAACCATCCAGCCCGATGTGTTAGCCGCTTTG 6622 37 100.0 37 ..................................... TTATCTAGTGCTGCTAGTGGAACCAACCACAGCACGA 6548 37 100.0 33 ..................................... AGATAGAATTTCTGCGATCGGACGGCGAAACTG 6478 37 100.0 34 ..................................... ATCTGCAAGCTCAAAGGTTACTGGCGGGGCAAGC 6407 37 100.0 38 ..................................... ACATTTATTAGCAGAAAGGAAAGGCGGGACGCTTTCAG 6332 37 100.0 37 ..................................... ACATCATTTAGATTTGAATCATCGGGACAGAATAAGC 6258 37 100.0 36 ..................................... CAACAAACCCCGGCGACTTTGGCTCAATCCGCAGGT 6185 37 100.0 35 ..................................... TCGATGCTATTCGAGCCAAACTTACAGCGGGGATG 6113 37 100.0 33 ..................................... TTTTCCAGAAGCGCGGGCGACGGCCTTTAACAA 6043 37 100.0 33 ..................................... AAATATCTGTAACTCTGCCACCGCTTCAGAAAG 5973 37 100.0 33 ..................................... TTATAGACGAATTCCAGGTAAAAGCAGCCATTG 5903 37 100.0 34 ..................................... TAAAAGACTTGCCAATTTGACCGAAAGACGTAAC 5832 37 100.0 31 ..................................... TTAGAAGATGACAAGGTACATGATAAGGCGA 5764 37 100.0 34 ..................................... TCGGCTAGCTGTTTGCATTTGTGCGATCGCATCT 5693 37 100.0 33 ..................................... GCTGCATTGTTTGATGTTGTGTAAGTCGTTGCC 5623 37 100.0 36 ..................................... AGAAAGATCGCACCTATTTCTGCAAAAGGTAGCCAA 5550 37 100.0 34 ..................................... TTCAGTGCTAGAGTTTGACGTGCGATCGCGGGAA 5479 37 100.0 35 ..................................... TGCTGCTTTTCCCCTCCCTGCCAACCCTTTAGCAA 5407 37 100.0 35 ..................................... CCGGAACTAATCACGGGTTTTGATAATTCCTTTGG 5335 37 100.0 39 ..................................... TTGTGTATGAAACCCACGTGACGGACAAGAAATCGGGCA 5259 37 100.0 36 ..................................... TTAGCTACCCATTGAGAGAAATGCTTTATGGCCCTT 5186 37 100.0 34 ..................................... CTGAATACAGAACCTTGACAACCGAATAGGAGAA 5115 37 100.0 35 ..................................... ATTCAGGATAAGGTAGGGGCTAGACCGTTCACATT 5043 37 100.0 36 ..................................... CGGGTTCTGAGCCTGAGCCAAGTGGGTCGGCAGGGA 4970 37 100.0 37 ..................................... TTGACTTTTATCTATGGTGGGAATACAACTCCTACTC 4896 37 100.0 37 ..................................... TATGCGGCGACGGTGGGAAAAATCGACGCTGCGGGAA 4822 37 100.0 37 ..................................... AAACCAACTTTTTGCAACTTGAGCGGTAGGGCGGGTC 4748 37 100.0 50 ..................................... TTGATCAACACCGGCATCAATTGACGCACCGATTGGGCCGACTCCGATAC 4661 37 100.0 36 ..................................... CTGCCAGCAAAACCGCCATTTGGTAGCTATTTTGTG 4588 37 100.0 34 ..................................... GGGCGCTTCATCGTGAATCGCCAGGTAATACTGT 4517 37 100.0 39 ..................................... CGGAGAAGATAAGAGCGGCTTCATCACAGAAGAAATTGA 4441 37 100.0 38 ..................................... CGAATTTCTTTATCTGTTATCTGAAAATTGAAATTCCA 4366 37 100.0 34 ..................................... TGATTCCTCTATAGTACAATCTAATAATAGATTA 4295 37 100.0 39 ..................................... AGCAAAGCAAAAACTTTCAAAGGTGAAAGCATGATCATC 4219 37 100.0 48 ..................................... AATTCCTACGAATTAGCAAGCGGTGCCGAAGGGGAAATGCGATCGCGA 4134 37 100.0 35 ..................................... CCGTGGCTTAATTTCCATCAATTGCGCGGAGGTTT 4062 37 100.0 40 ..................................... GCAAAGTTCCGGGCGCTACTCCTTGACCGCTGGCGATCGA 3985 37 100.0 38 ..................................... ATATAAGAGTCGCCGACACTAATCACACCCTCGCCGAT 3910 37 100.0 33 ..................................... CAAAAGTGCGATCGCCTTTATCTACAGGCAACA 3840 37 100.0 35 ..................................... TGACCGCCTATCACCGTATCGATCAAACCTCCGCG 3768 37 100.0 36 ..................................... GCGCTGCTAACCAAGGTATTTGCAGTTCCACCAACC 3695 37 100.0 37 ..................................... GAAACCGCGAGATACCCAAAAACTGTAACCGGGTCTG 3621 37 100.0 33 ..................................... TTGATGTCTCGCGCATCATAGCTAATCGTACTT 3551 37 100.0 39 ..................................... ATGCCGCGTAATTCTCTACCAACCATTGAATACACTCTG 3475 37 100.0 35 ..................................... TTACAACTTTTAAGCCCGCAATCTTCTCAACAATT 3403 37 100.0 36 ..................................... AGCTAGAAAATAGTGCTGCAAATACTTTGAACGAGG 3330 37 100.0 37 ..................................... TTACAACTTTTAAGCCCGCAATCTTCTCAACAATTGC 3256 37 100.0 33 ..................................... TGGAATATAAAGGGGGGAAAGCTCTGAAACAAA 3186 37 100.0 35 ..................................... TAGGGGCAGGAATGGGGGGAAGCCTCCACTTCCTC 3114 37 100.0 37 ..................................... GCAGGCACAACATAAGCAGAATCAGAAGCCGAACAAG 3040 37 100.0 35 ..................................... TTGATAACTAATCGCTATATTTCCATTAATTTCCG 2968 37 100.0 42 ..................................... AGACATTAATTAGCGGACAAAGTACGGGCGCGAGCTTGAAGA 2889 37 100.0 33 ..................................... GATGCTCCCATTGCTTTACCGAAACAGATAGTA 2819 37 100.0 38 ..................................... ATCAACGCCGCCCTTGCCAGCTCTCAAGAAAAACTCAA 2744 37 100.0 35 ..................................... GAAATTGAAGGCATAACTTAACTGCTGGAGTCGAA 2672 37 100.0 36 ..................................... ATGTGGTGATCTATGGTGACAAAGGAAGTCTGGCGC 2599 37 100.0 34 ..................................... AATACACCCCTGTAAATGAGGGGTGTAAATCAAA 2528 37 100.0 41 ..................................... GATCGCGCAAGCTGTTGACAAAAAAGTTGAAGAAATCACAG 2450 37 100.0 38 ..................................... TTCCGAAGCGGCCGGAGATACCAGGCACGGCTTTGTAT 2375 37 100.0 41 ..................................... TACGCGAACCAATACTCGGAGCCAGGAGAAGCGCAAGATAA 2297 37 100.0 37 ..................................... ATGATTAATTTACAACATTTACTTGCTGATGCAAACA 2223 37 100.0 32 ..................................... AATATCAATCATCTAAGAATTCTCCGAATAAT 2154 37 100.0 33 ..................................... CTAATCTCAAGATTACAACTTTGGATTCTTTGC 2084 37 100.0 40 ..................................... CTTCACTCCCACCACTGGCAATATCACTATCTGGACGCCA 2007 37 100.0 36 ..................................... AGCTCAACCTCTAGAGCTTCTGCCAAAATTTGTAGT 1934 37 100.0 37 ..................................... GGATAGATTTACTGGTTTCTATGCGGACACCCTTTCC 1860 37 100.0 36 ..................................... CTGGGAGATTCGAGTGAGTGGCTGGTTAAATTTTCA 1787 37 100.0 37 ..................................... GATTTGCCGTGGCAATTTCTTCAATCCAAGCGCCGCT 1713 37 100.0 32 ..................................... AATAAAATCTCGCTTGCTAATTCGCAGACTGT 1644 37 100.0 34 ..................................... AAGAGAGGAATAGTATCAGTCGCCTGCGTCACGA 1573 37 100.0 40 ..................................... CTTCTGATTTAAAGCTACGCATTTCTGATGAAATTACTTT 1496 37 100.0 34 ..................................... GGACTTGCGCTGGAATAGGGGTTATCAGTGTAAC 1425 37 100.0 35 ..................................... GATCTGATGCCGTATTTCTCTAATGCCAATACTAT 1353 37 100.0 40 ..................................... GGAAGGTTGCGAAATTGTGGGCGACGGAATGGATTATAAA 1276 37 100.0 36 ..................................... GAAAATCCCGGCTTTTACACCGGGAATAGTTCCAAG 1203 37 100.0 34 ..................................... TTGCTCAAAAAAGGGACGGGAAATTGGATCGAAA 1132 37 100.0 36 ..................................... CCTTGTACAGGAAATCTAATTTTCATTTGAAATAAT 1059 37 100.0 39 ..................................... TCAGTAGCCCAGTCATTTCAGCAAAAGCTTCTGAGATAT 983 37 100.0 41 ..................................... GTTGACTGGAATGTCGAGGTTGTGAATCTCCACTAATTCAG 905 37 100.0 34 ..................................... TTCTTCGTTGCTGGCCGTGGCTGCTGCACTGGCA 834 37 100.0 33 ..................................... TTGGTCAATCGAGATGGCTGGCTGGGATTTTGC 764 37 100.0 36 ..................................... AGGCAGCATGGGAATAAGTCGTCACCATCGCTTTTG 691 37 100.0 38 ..................................... TTTCTTGCTTGGCAGCTCTTCTCTGACGCGCCCACAAA 616 37 100.0 41 ..................................... CTTGCTTTTTCTGTGCATTCCGTCCCATGTGATGCCTCCTA 538 37 100.0 34 ..................................... AAATCGTTGAACAAGCTTTTCAGCTTCTGATTTG 467 37 100.0 34 ..................................... CAGTCATCGCCCGGAGTGCCGATCGCTCCCAAAC 396 37 100.0 35 ..................................... GCTGCTGCCTCCTCCTTCATATCCAAGTTGAACAA 324 37 100.0 42 ..................................... AGCAATTACGGCAAGTCCCACATTTACCTGTGAGGTATCCAT 245 37 100.0 36 ..................................... TTGATCCTTTTAATCTTGCCTATTATTGCAAAATTA 172 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================== ================== 130 37 100.0 36 GTCGCAATAAACTCCACTCCCTACTAGGGATTGAAAC # Left flank : CGGAAGACAAGCGGCGGACTAAAGTTCACAAAATTCTCAAATCCTACGGGCAGTGGATGCAGTACAGTGTGTTTGAGTGTGCGGATTTGAGCGAAACGCAGTATGCTAAGTTGCGATCGCGCTTGGCTAAATTCATCAAGCCCCCAGAGGACAGTATCCTATTTTTTCCGTTGTGCGCTTGCTGTCAGGGTAAAATTGAGCGCATTGGTGGGGTAGTTCCGATCGATCGAACTATTTTCTTTGCATAAAAATTCGCCAACCTGTAGGTGTAAAATTTGGGGGGTCAAATTTTTAGGCTATAATCTATATAGATTAAGGGTTTGATGCTCCCTCTCCGAAAAAGAGGTTGGCGAAATCGCTAGGACTGTTGCTGGATAAGGATTTTAAGTTGAGGTGCGATCTATGGTATTGACAGAGCGAAAGCTGAAATGGTATTCTCTGAGGAGGTTGGCGAAACTGAACCTTGAAAACCAAATAGAACAATGGTTTCACACACCGGC # Right flank : CTTTTTGGCCTGACGGGGTGACAACCCCGTTAAAACATAGACTCAATCAAGGACATAGCTCTCATACCCTTCTGAAAAAATGGCAATTTATTAGGTCTTATTTTCATTAATTCAACAACTATTTCCTGACAATATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAATAAACTCCACTCCCTACTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 46120-46383 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWT010000028.1 Tychonema sp. LEGE 06208 NODE_28_length_59624_cov_14.9924, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================== ============================================= ================== 46120 40 100.0 33 ........................................ CGGATGTAAGTCCGTCGGAAGAGGGAAGAGGGA 46193 40 100.0 45 ........................................ GTCCGTCGGAAGAGGTCCGAGGGAAGAAGGAAGAGGGGAGAAGGA 46278 40 95.0 26 .....................CG................. CGGATGTAAGTCCGTCGGAAGAGGGA 46344 40 100.0 0 ........................................ | ========== ====== ====== ====== ======================================== ============================================= ================== 4 40 98.8 35 AGTTCGGCAGCGGATTATGTAACGGATGTAACGGATGTAA # Left flank : ACTCAATTTGGCTTTTTGCTGGCGGCGGCTGGTGTCGGAATGGTCTTCGGGGCGGCTTTTTTGGGTCACTGGGGCGATCGAATGCAGCAGAAACCTTTACCGTTACTTGGTTTCTTGATGATGGGTTTTGTATTGGCAATGTTTGCCTTTACCAGACAGTTGTGGCTGGGATTTAGTTTGAGTGCTCTGTTCGGTTTTGGTGCTTCTTTAATTAACGGCCCGATGCAAGCTTTGATTCAAGAGAAAACTCCAGAATCTATGCGGGGAAAAGTCTTTGGCTTGGAAAACAATGCGATTAACATTGCCCTCAGCTTGCCTTTAGCAGTAACAGGCCCGCTGACGGATGCTGTGAGCAAAGTAGTGGGATCGGATGACTTGGGTTTGCGGATCGTGCTGCTGAGTTTGGGCTTTTTGGTCTCGGTGATGGGTATGGCAGCTTGGCACCATACTCGCAAAGTCTTAAAGGATGCTCTGTAAACTTTGGCAACAAGGAAGAGGGG # Right flank : ACGGATGTAAGTCCGTCGGAAGAAGGAAGATGGAAGAGGGGAGAAGGAAGAAGGAAGATGGCTTTCTTTTGGCGATCGATCTCTAACATATAGCGGTTCGATCGCGTGGTGAGGTATGCCCTATGCCCTATGCCCTATGCCCAATGCCCTATGCTCAATGCCCAATGCCCAATGCCCTGTTTGGCCAATGCCCAATGCCCAATGCCCTATGCCCTATAGCGTCATATCGCGGTAAATCGGCATAGAAACCGCGATTTCCTCTATTTCTTTTCTTCCTCTGCTGTTCCACAATTTTGCCCGAAAGTCCGATCGCACACCGCCCCAGCGCGAAACTTTTTGTAAAATATCCGCCGGTGAACTACCAGAGTTCGATCGTAGAGATTAAAGTAGTATCAAAGCTTTCATTAAAATTCATAATTAGTTGGAGGTAAAAAAATCAGTGCAATTAAAAACTAAAGTAGCCGTCAGGCGTGCAACGGGTGGATTTGCTTTAATCGATA # Questionable array : NO Score: 2.50 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.09, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTCGGCAGCGGATTATGTAACGGATGTAACGGATGTAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 92682-91979 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWT010000009.1 Tychonema sp. LEGE 06208 NODE_9_length_93060_cov_15.4613, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ================================================ ================== 92681 38 86.8 34 .CAG.........TC....................... CTTTATCTTCTACTAATCTATACTTCTCACTTCA 92609 38 97.4 32 ..T................................... TTATTCGGGCAATCTAGAGACGGATATCCCCG 92539 38 97.4 33 .......................T.............. AAATCGGCGACAACATTGCACAAGCGGGGAAAG 92468 38 97.4 33 ..T................................... TACCCACACGTTCAAGATGCCTAAATTTAATCG 92397 38 100.0 33 ...................................... AGTACGTATGGTATCAAGGGGCTAACGCACCTG 92326 38 100.0 38 ...................................... TTTGCGATCGAGCCAAATCAGTCACTAGCATCGATCGT 92250 38 94.7 48 C..............T...................... TTCATTTCACCTCTGGACAAACCAGAACGGGAAGGACGCAACCCGCGC 92164 38 100.0 39 ...................................... TTCATTTCACCACCAACCGGAATTCCCCAGATTTCGGTG 92087 37 97.4 34 .......................-.............. TTTAGGAACCCAAACATGAAAATAACATCGATCG 92016 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ================================================ ================== 10 38 97.1 36 AGCCGCAATAAACCACACTCCCTACTAGGGATTGAAAC # Left flank : CGGTGGAGCGATTTAATGCCGTTGATGAGTTGGCAACTCTGGGACGGCTAGGGATTTAGTGGTTGAAAATATACTACGCGGGGCAATCTGCTAATATCAATGTAACTCCTGGACGTGTTGCCCAATCCATGTTGTCGCTTTTAGTTGACATTGGTACTCTTACTAAAATCCCTAAACATAGGGGAAAATCCCCCGGTTGGGAAAAAGGAAAGGTACGTACCAAGGCCCCGTGCTATCCACTGTCAAAAAACGGGTTTTTCGACGTAAAAAGTCTTCAAGGTTAGCCATTTAATCTTCTCCCTCTTGAGTTTTTAAGCAACAGTTTGCCTGAGATTCAAAGGTCGCTACTTTTAGCTGCGCTCATTTTTTAGTCTAAAC # Right flank : GCGCCAAACTATAAAATTATTGGCTCAAAAATAGATTGATCCTCACCCTGTTTATCCCCTCCAATAACCTCAAACAATTGATCGACTCCACAGCGCCAAGAAAAATGCTCAGCCACAAAACCAGGCCCCGCAACCCTAGCTTTGGCAGCTATTCCAGGCTGTTCGATCGCCCTGAGCATCAAATCAGTCAAATGTTCCCACTCAGGAGCTAACATAAATAAAGTTTCCCCATCGACAACCACAGCCGTAAATTTACTCTCTATCCGCAACGCAAAATCCGATCGCGTAAAATCATCCGTAGGGCCGCCCGCAGTACAGATTACCAGCAAACCGCAAGCTGCAGCCTCCAACACCGGCAGATTAAAACCTTCCGCCAAATAGGGAGAAACATAAACATCCGCAGCTTGGTACAACTCAGCTACTCGATCAAAAGATAGCTGCGTACCAGTATAAATCAATCTCGGTAAAACCCTCGCTCTTTCCGCATCGTCGAGCACCAC # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGCCGCAATAAACCACACTCCCTACTAGGGATTGAAAC # Alternate repeat : AGTCGCAATAAACCACACTCCCTACTAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.63%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 1 165-19782 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWT010000120.1 Tychonema sp. LEGE 06208 NODE_120_length_19971_cov_12.7533, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================================== ================== 165 37 100.0 34 ..................................... AATTCGCCTATCATGCGTTATGCTGCCGTTGTTC 236 37 100.0 33 ..................................... ATTGTTGTTTCCTGTGAGTTTTGTTTGTATATT 306 37 100.0 34 ..................................... GAGTATTACGCGGAAATACAAGCCAAAAAAGATA 377 37 100.0 36 ..................................... TGAGGATTTGCAGCCTGAAACTTTGGTTATCAAAGC 450 37 100.0 32 ..................................... CTGCATTAATTTGAAAGCAACCATCACCAACA 519 37 100.0 35 ..................................... AAAAAAATAGATTTAGCAATTACTCGTGAGTGTTT 591 37 100.0 42 ..................................... CGCTCGATCGCCCAGAGCGACACTCGCCGGCGGGGTCGCAAT 670 37 100.0 35 ..................................... TTCAACTACCATTTTCTTTTTTCCTTCTTCGTTGA 742 37 100.0 34 ..................................... CTATTGCGTTGCCGCTGCCGTCTCTCGAACTTGA 813 37 100.0 35 ..................................... TCTCAAGGTTTTGCTGCACAACTCCTTAAACAGTT 885 37 100.0 34 ..................................... GCATTAGCCCAATGCAGCTTTTTACAGGTAGTAA 956 37 100.0 35 ..................................... CCCGCTCAAACTCTCTTAATCTATATCTACAATTG 1028 37 100.0 32 ..................................... TTTTGATCGCCTCTCAAACTTGCAACTTGACC 1097 37 100.0 33 ..................................... GAAACTTCCTTCTACTTCGAGCACAGGCTTTCC 1167 37 100.0 43 ..................................... GCTGTTGATAAAAGCCAACCATCAGGCTAAAACAGTGTCGCAA 1247 37 100.0 35 ..................................... AATACAAGGACACAGAGCCGAGCAATGGCGAAAAA 1319 37 100.0 33 ..................................... CAAAAGGATTTTCGGTGGTCGAATTGACTATCA 1389 37 100.0 36 ..................................... CGTAAACACCGACAGAGTGACCAACATTTATATCGA 1462 37 100.0 34 ..................................... AAAAGAATTACTGGTACTACGGCAGCTACTCAAG 1533 37 100.0 36 ..................................... TTGCGGGCTTCACCGCGACGAAGCTGCCACAGAGGC 1606 37 100.0 36 ..................................... GCGAGCTTCTATTTTTCGAGTGAATATACTCTTGGT 1679 37 100.0 41 ..................................... AAAAGTGACTCTGAAATGGTAGGGGCAACTGATTTCATTAC 1757 37 97.3 39 .................C................... AACTTAATGTTGCTTTTGCCGTTTGGGGCTTGCAATATT 1833 37 100.0 35 ..................................... TGTAAAAGCTCCTGCCATGTTCTTGCCCTTAAATT 1905 37 100.0 35 ..................................... TTTCTCGGCCCAGCGTTTTACCCAGTCGGCAGGGC 1977 37 100.0 41 ..................................... ACAAAAGCCAACATTGAAAGATGTGCAGCTTGGGCTACTGA 2055 37 100.0 33 ..................................... AAGCCAGTTAATTACTACAGCTTAAAGTGGTCG 2125 37 100.0 34 ..................................... TGGAGAGAAAAGCGGGCGCTCTTTTATCATCAAA 2196 37 100.0 35 ..................................... AAGTTGATTTCGGCGGGTGCTGGCTCAAAAAGCTC 2268 37 100.0 41 ..................................... ACGAGACAAATGGAGCGGCGATCGGGAGATAAATCTAAAAA 2346 37 100.0 31 ..................................... AATTTCTTAGAAAAAGGAACTTCATCCAAGG 2414 37 100.0 43 ..................................... TTAAATTATTGGATGAAAACGGACATTTTGCGATCGCCGAAGC 2494 37 100.0 37 ..................................... GAGAAAGGGGTAGGCTTGTTGCTAGCGGACAGGCAAT 2568 37 100.0 34 ..................................... TTACAAGTTTTGGCTTGGGTCAATGGCAATCTGC 2639 37 100.0 35 ..................................... GCGATGGCGTACTGCTACAAGACTACCAGTTTTTA 2711 37 100.0 34 ..................................... AGATGAAACAAGACAAAAGAAACGGCGTTTATCC 2782 37 100.0 36 ..................................... TACGATCATCAGGGTTATCCTTATAGCCGTATTTGT 2855 37 100.0 41 ..................................... AATCCAAACGGGCGGGATTAGCTTCGACGAGTGGTGGGAAA 2933 37 100.0 37 ..................................... CTGTGGCGCTGATGTTGCACGGGCGATCGGGTATCGG 3007 37 100.0 33 ..................................... ACGGAGCGCAATCAGAACTGCCACCAACCTTGC 3077 37 100.0 33 ..................................... GATGTGGCGAGCCAAGGGGCAGGTGGCGCACGT 3147 37 100.0 36 ..................................... GAAGCAAAAGAACAGATAGCGCGCGATCGATTCAAA 3220 37 100.0 39 ..................................... CAACATCCTGACTGGGGCTGGGGTGAGATTGCAGATATC 3296 37 100.0 35 ..................................... TCCTCCCATATACAAAATACCATCTACAAAGTCGA 3368 37 100.0 36 ..................................... TAAACACTGCATGGCTTTAGTACCATCCCAATCAAC 3441 37 100.0 42 ..................................... AAAAAAGCCAACATTGAAAGATGTGCAGCTTGGGCTACTGAA 3520 37 100.0 37 ..................................... CATTCTCCGCCCCATAGGATGTTGTTGAGCGGGTCAC 3594 37 100.0 33 ..................................... TGAGAAACTGAAAACAGATAAATTCCCTGAGAA 3664 37 100.0 35 ..................................... GACTCGCTCCCTATTTTGGGCGAGTCCGAAGTTTC 3736 37 100.0 36 ..................................... TTTTTGCATAACCCCAACACCTAACTCTAGTTGAGC 3809 37 100.0 33 ..................................... AATTTATGGAGCAAAGCAAAATGTTGTATCACG 3879 37 100.0 34 ..................................... CTAACACTAGCCAATCATTTAAGTTTGTTTCCAG 3950 37 100.0 39 ..................................... AAAAAGCGAAAGTTGAGCACTGCTAATCATTGGTTTTTT 4026 37 100.0 38 ..................................... CTGGCGCTCCGATACCAGAGCAAAGTGTGGCGGCTCGT 4101 37 100.0 42 ..................................... CGATCATAGCGGCCAACTGGCGGGGGACGGGAAGTCGCAATA 4180 37 100.0 35 ..................................... TCTGCTGATATCCCTTATTAAGTCAAGTGGCTAGG 4252 37 100.0 38 ..................................... GAGATTGTACCGACCTGCGATCACCGTGCAAATTGTAG 4327 37 100.0 43 ..................................... AAGCTCAAAAAGAGAAGGGTCAGAGTGATCTAAGTCGCAATAA 4407 37 100.0 37 ..................................... GACTCTTAATCAAGTGCGATCGCAATTAGAGAAAGAG 4481 37 100.0 33 ..................................... GAGAAAATCTCGGACTGATTCATCATCAAAAGT 4551 37 100.0 33 ..................................... CTGGTTTATCTTCTACCTAATTTAATCTTATGG 4621 37 100.0 33 ..................................... ATTTTTTAATAAGAGATAAGAGATAGGGAAAAA 4691 37 100.0 38 ..................................... GCGTACCGCTTTTTCCTCCCGTGTAATTCCAGGTAAAA 4766 37 100.0 36 ..................................... AAAGATTTAGCCTTGCGGTGGAGGTTAACCGCAATG 4839 37 100.0 36 ..................................... GGGGGATTTACGACGCTGGAAATGATGAATACACTA 4912 37 100.0 38 ..................................... GCCCAGGAACATCCGTGACGACTTCGACAGCGGCACGT 4987 37 100.0 35 ..................................... CTACGATCGCAACCTGCAACATCGCTATCAACTTA 5059 37 100.0 36 ..................................... CATGATGAATTGGATTTTAGATTCAGCTTTTAGAAA 5132 37 100.0 34 ..................................... ATAAAATTGTCGAGGTTCAGTTGGTTTTTCTAGC 5203 37 100.0 37 ..................................... TGATAAATTTATGCGATTGCAGTTGGCGGCCGGCAAA 5277 37 100.0 35 ..................................... TACTTTGAAGCTTTTGGAGACGACGATACTGAATT 5349 37 100.0 35 ..................................... ATTTTTTTTATAAACAGGATGACACTTCCAATGAA 5421 37 100.0 40 ..................................... ACGGGAAAACGTTGGTAATCTGAGGTACGCCCACCCCAAA 5498 37 100.0 33 ..................................... TTTACTACGCTTTGCTGCGGATTGGTTCTAAGC 5568 37 100.0 38 ..................................... AAATTTGAAGAATTCATTGATTGCCCCGAATGGCTTTA 5643 37 100.0 36 ..................................... ACATAAATAAACTTACTTCCATCCTTAAATACGTGC 5716 37 100.0 34 ..................................... TAGATATTTTTTCTACCGACAAATTAAGTGATAA 5787 37 100.0 33 ..................................... AAATCAATGAATTAATAAACAGTAATTGCACGT 5857 37 100.0 37 ..................................... AAATTACGCAAATCCAAGAATCCGGACAATTCTCAAA 5931 37 100.0 36 ..................................... GAATTCATCCACTCATCAATGATGAGTGAATCAGAG 6004 37 100.0 33 ..................................... GGGTACAATCAAAGGCGGAACTTTTGCGCAATA 6074 37 100.0 35 ..................................... CCGGTAGTGAGACAATTTTGCTATGACAAAATAGA 6146 37 100.0 39 ..................................... TTTTTGTGGCCGCCATAGTTCCCCCTATAGTTCATAAAT 6222 37 100.0 37 ..................................... AAATAGATTCTTGCACCCAATATGCACCCAATATGGA 6296 37 100.0 36 ..................................... TTACGGCAACTGAATCAGTGGGCACTGAGAAATTAA 6369 37 100.0 36 ..................................... GCCTTTCAAGTGCTATATCAAGTTGTTTCTCTCTCA 6442 37 100.0 34 ..................................... GATTGGGTCGGGTCTGCGCCCGGAAATTTGAATA 6513 37 100.0 33 ..................................... AAACCAAAACCGACTACAACCAAGCCTAAAAAA 6583 37 100.0 35 ..................................... ACGCTTCAGGCATCCCTCTCTACAGCCTTTACAAC 6655 37 100.0 35 ..................................... TCTGTCGTTGAATTGCAAAGCAGTCGCCCCAACGA 6727 37 100.0 35 ..................................... ACCACCATCCCCCCAGTCGCCAGCAGGGAAAGCAA 6799 37 100.0 39 ..................................... TCTTCGTAGTTGGATTCAACTTCCAAGGAGCCGTCGGTT 6875 37 100.0 38 ..................................... GGGCTTTTTCTGGTCGGCCGCGGAGGCGAGTTGTTCGC 6950 37 100.0 52 ..................................... CGAGTATGCAATTATAGATTAAGGATTTGAGCGGGAACTTTCTCCCGCTCAA 7039 37 100.0 33 ..................................... TGATGGCTTCTTTTTATTAGATTTGTATGCTGC 7109 37 100.0 33 ..................................... TTGGTTATAACAACCACTAGACATTATGTAAGA 7179 37 100.0 37 ..................................... TTTGATTTAGCAAATTTATGATGATTAAAGCTTGCGA 7253 37 100.0 38 ..................................... TTGCTTGGTCAAACCGATCGTCCATATCGGCTTCTATT 7328 37 100.0 34 ..................................... GGTTGCTCGGTGCCGATAACCATAGATGTGGCAA 7399 37 100.0 38 ..................................... AAAAATTGAAAATGCGGGAACAGTTTCTATATAATCAA 7474 37 100.0 35 ..................................... TCCTGAGAGACTTTTTTTAGATTTTAGATTTTAGA 7546 37 100.0 35 ..................................... AATGAACGCCGATCGGATTCGGCAGAAACTAGCCG 7618 37 100.0 37 ..................................... AATAATTAATAAATGCTTTATGGGTAAGGGGCGAGCC 7692 37 100.0 39 ..................................... TTTAATAACTAATGGTGCTTTCGCTCAACCTATCCATAG 7768 37 100.0 37 ..................................... ATTTTGGTAGGTTATTGCTGGCTAGGCGGATAGTCGA 7842 37 100.0 37 ..................................... GATTTATAGTCAAAATCAATTTCATCGCGAAACCAAA 7916 37 100.0 37 ..................................... GACCAATTACCCGTACCTTTTTTTGCGTGAAATCTCA 7990 37 100.0 36 ..................................... TGTTACCCTCGGAAATAAACTTAATACGACCTCTCC 8063 37 100.0 35 ..................................... ATATTCGTCACGGTAAAGGCAAATTGCTAGGTCGG 8135 37 100.0 35 ..................................... GAGGGCTTATCACCGCAATCCCTAGCGGAACTGGC 8207 37 100.0 33 ..................................... CAAAACTACCTTAAGATCCATCACGGCTATCAT 8277 37 100.0 34 ..................................... CAAGAACGGACTTTAATTATTGAATTTCGAGAAA 8348 37 100.0 33 ..................................... CAAGAGCTCGTGAGTATGGCATAGAAAGAGATT 8418 37 100.0 36 ..................................... CGAGATTTTTACGAGAGCACAGCCCAAGCTAGTCGC 8491 37 100.0 41 ..................................... ACCAAAATCCCCGCAAATCTAGGAGGCTTAGGCTTAGTCGC 8569 37 100.0 34 ..................................... GTGGCTAGCATCACCCGGAGCGTAAGGGATAATA 8640 37 100.0 35 ..................................... TTGCTTGTTACATAATCAAAACTAATATTTATCAA 8712 37 100.0 34 ..................................... TTGTTGATGATATTATTCATGGTTTCCCATCTGA 8783 37 100.0 33 ..................................... AACAATAAGCAAATTCAAACTTTCATAAATAAC 8853 37 100.0 36 ..................................... ACATTTGTCCGAGTTGTGATCATCAAATATTTTTAG 8926 37 100.0 33 ..................................... AAGGAACAAATCACTAATTTATCTGACGATCCG 8996 37 100.0 40 ..................................... AATATGTGCAAGTCTTATAGCTTAGCAGCTTATATGAAAG 9073 37 100.0 35 ..................................... AGAGCAAAGTTGATTGCATTTTGATTTTGCTTCAA 9145 37 100.0 35 ..................................... AGTAAAAAAGACAAGATTAAATATTTAGACCAAGA 9217 37 100.0 38 ..................................... TGATGTGGGTATCCCTCAGCAATTTTTGGATAACCTTA 9292 37 100.0 37 ..................................... TTATTTTACCTGTCCGTTTAAAAATAAATCGCGTCGC 9366 37 100.0 33 ..................................... TTTTGATTCTATTCATTTAGATATATAGAAATA 9436 37 100.0 35 ..................................... ATTTCCTTCAAAGATTGACGAAGCTCATTTAAAGG 9508 37 100.0 33 ..................................... TGTATGGCCGTATTCGGTGCCGGTTTGGCTCCC 9578 37 100.0 35 ..................................... GGTTGTACAATGTCGATCGGAAATTTTTGGGCAGC 9650 37 100.0 35 ..................................... AAAACGCAGTCAGGCAAAGTATTACTTACCTATTC 9722 37 100.0 33 ..................................... TCACGAATTACAGGAGCTGAAGCTGTGGAACGG 9792 37 91.9 34 T.AC................................. TCACCGACTACCGCCTCTCCTTTCGTTCCATCCG 9863 37 100.0 33 ..................................... GTAGCAGCATTAGCGACAGCGGCAGAAACAACA 9933 37 100.0 34 ..................................... CGTCAACAGCACTTTTCTGGTTTAAATTGGTATA 10004 37 100.0 35 ..................................... TTTACCTTTCTCTGTACCGATGATTGGGATTTTAA 10076 37 100.0 40 ..................................... CTTGATTATTGTAAGCTTGTTCTTGCCTGGAAAATTGGTC 10153 37 100.0 34 ..................................... AAAATACATACTATCACTTCAAAAAAAAACTATA 10224 37 100.0 33 ..................................... AATGCAGTTTTTAAGGATGGTTAGTGATTGTGA 10294 37 100.0 35 ..................................... CCGACAAAAAACTTGCGCTCGTTTTGCGAACACGG 10366 37 100.0 33 ..................................... TTATATTGATGAGGCTTGAAAGCATCGCAACTA 10436 37 100.0 37 ..................................... CTGGATAGATTTTCACCCAAGCGAGGGAAAGTGCTAG 10510 37 100.0 37 ..................................... TCGCTGGCTGGGAACTCAAAGCGTTTTGCCGCCAAGC 10584 37 100.0 33 ..................................... TATTTATTGAACCATCGCCTGATTGCCTGCAAA 10654 37 100.0 36 ..................................... CGGGGATAGATCCAGATTCCATACCTAGCGCGACGG 10727 37 100.0 40 ..................................... TCATAATTTTTTACGAGTTTGAGCTTGTGTGTACTGGGGA 10804 37 100.0 35 ..................................... GCCTACTGAATATAAAAACACAAAAAAACTGTCAA 10876 37 100.0 35 ..................................... TTCGTCCAGGGCTTCTTGGATTTTGGCCGCTGTAA 10948 37 100.0 37 ..................................... GGCATGGGTGTAGTTCGCGAGGATAGTGGCCAAAAAA 11022 37 100.0 36 ..................................... TTCCACATACGATCGCATTTGGAAGCGTCGGCTTGC 11095 37 100.0 34 ..................................... GGCTTGATGTCCATCTGTGAGGACAATGCGATCG 11166 37 100.0 33 ..................................... TTAAAAGCAAAAGAGTAGGCGAGTTTGTTCTAG 11236 37 100.0 38 ..................................... TATTTATAGCTTCATCTGTGACAACCTCAAACCCTTGC 11311 37 100.0 36 ..................................... TGCAACAGGACAACAGAAATCTTTGAGCATTCTCAA 11384 37 100.0 32 ..................................... TCCTTATTCGTACTGGAATGCTTGATGAATTC 11453 37 100.0 33 ..................................... TGACGCTATCTTTCCAGTTGATATCCCAATAGG 11523 37 100.0 33 ..................................... AGCGAAGACGACACTATCACCCCCTACTTTTAA 11593 37 100.0 33 ..................................... TCGATACATAGTCCGGGTTCATATTTTCCTCGG 11663 37 100.0 39 ..................................... AGTGCAAAAAACACCTGATTCAAGTATGTAGTACGCAAG 11739 37 100.0 39 ..................................... TTTGAAGAATTTTTAGCTCGGACTCCTTGAGGATTTTGG 11815 37 100.0 36 ..................................... ACTGCCCGATCGCCGGGATGATGACAGAGATTTATT 11888 37 100.0 37 ..................................... GACAGTGCGCGTTATGTGGATGCGCGCCCCCCATCAA 11962 37 100.0 36 ..................................... GACACGCTTGACTTTGATGGCAAAGAAATCTATTTG 12035 37 100.0 35 ..................................... ACTGGTGTCTCTTTCGCTTGTAGCCTGCCATCTAG 12107 37 100.0 35 ..................................... GAAAAACAATCTAAAAACTCAGGAGAATCAACCTT 12179 37 100.0 35 ..................................... CCCGCTCAAACTCTCTTAATCTATATCTACAATTG 12251 37 100.0 32 ..................................... TTTTGATCGCCTCTCAAACTTGCAACTTGACC 12320 37 100.0 33 ..................................... GAAACTTCCTTCTACTTCGAGCACAGGCTTTCC 12390 37 100.0 43 ..................................... GCTGTTGATAAAAGCCAACCATCAGGCTAAAACAGTGTCGCAA 12470 37 100.0 35 ..................................... AATACAAGGACACAGAGCCGAGCAATGGCGAAAAA 12542 37 100.0 33 ..................................... CAAAAGGATTTTCGGTGGTCGAATTGACTATCA 12612 37 100.0 36 ..................................... CGTAAACACCGACAGAGTGACCAACATTTATATCGA 12685 37 100.0 34 ..................................... AAAAGAATTACTGGTACTACGGCAGCTACTCAAG 12756 37 100.0 36 ..................................... TTGCGGGCTTCACCGCGACGAAGCTGCCACAGAGGC 12829 37 100.0 36 ..................................... GCGAGCTTCTATTTTTCTAGTTAATATACTCTTTGT 12902 37 100.0 41 ..................................... AAAAGTGACTCTGAAATGGTAGGGGCAACTGATTTCATTAC 12980 37 100.0 39 ..................................... AACTTAATGTTGCTTTTGCCGTTTGGGGCTTGCAATATT 13056 37 100.0 35 ..................................... TGTAAAAGCTCCTGCCATGTTCTTGCCCTTAAATT 13128 37 100.0 35 ..................................... TTTCTCGGCCCAGCGTTTTACCCAGTCGGCAGGGC 13200 37 100.0 41 ..................................... ACAAAAGCCAACATTGAAAGATGTGCAGCTTGGGCTACTGA 13278 37 100.0 33 ..................................... AAGCCAGTTAATTACTACAGCTTAAAGTGGTCG 13348 37 100.0 34 ..................................... TGGAGAGAAAAGCGGGCGCTCTTTTATCATCAAA 13419 37 100.0 35 ..................................... AAGTTGATTTCGGCGGGTGCTGGCTCAAAAAGCTC 13491 37 100.0 41 ..................................... ACGAGACAAATGGAGCGGCGATCGGGAGATAAATCTAAAAA 13569 37 100.0 31 ..................................... AATTTCTTAGAAAAAGGAACTTCATCCAAGG 13637 37 100.0 43 ..................................... TTAAATTATTGGATGAAAACGGACATTTTGCGATCGCCGAAGC 13717 37 100.0 37 ..................................... GAGAAAGGGGTAGGCTTGTTGCTAGCGGACAGGCAAT 13791 37 100.0 34 ..................................... GAATATTAGCCGATTGGTTGAGGGTGAATATTAC 13862 37 100.0 33 ..................................... CAATCATTGATTCAACTTAATTAAGTGAATAAG 13932 37 97.3 37 ..................A.................. GGCTAACTCCATCGTTTCAGCCCAACTTTGTCCGGGC 14006 37 100.0 35 ..................................... TACAACTAATTTTAGTTTTTTAGATTTTGACCATC 14078 37 100.0 41 ..................................... CTTGAGCAAGGTATGTGATGGGATGTGGATCGAATTAAACT 14156 37 100.0 38 ..................................... TTGGAACAGTTACCTCTGGAGTAACCGCCAAAGCCTCT 14231 37 100.0 44 ..................................... TCAAGGGTGAGGTTTTAGACCAGATTCTAGAGCATGGTCTAAGC 14312 37 100.0 33 ..................................... CACGCTCCTGTAATTTTGCCTACCGATACTAAC 14382 37 100.0 35 ..................................... TTTGTTTACTTGTTTCCTTGGCTATGATTCAAATA 14454 37 100.0 41 ..................................... CCGCCTCGCCGGAGGCTGGCACATCAAACCGGGTGTCGCAA 14532 37 100.0 45 ..................................... CCCTTGACGTGGCCCTCTGACTCTTCGATTAATGCGCTGATTGTT 14614 37 100.0 36 ..................................... GCAGCAACGTTTAATAGCAAATCAATATTTGCTGTT 14687 37 100.0 34 ..................................... ATTACTGAGCTTCTTTCAGGGATTCTTGATTATT 14758 37 100.0 41 ..................................... CCTGTGACTTAAAGCTACGAATTTTATCTGAAATTACTTTG 14836 37 100.0 36 ..................................... TATTGATACCGCTGGAACTTTGTTAGCCTTAACCAA 14909 37 100.0 35 ..................................... TATTTGGGGTCAATTCTGGGCCCAACTTTAACCAC 14981 37 100.0 33 ..................................... GTGAATTATTGCTTTTTCTTCATATATTAAATT 15051 37 100.0 35 ..................................... GAGCTTAGCTACTTGCTCGCGGTCAATAGCGAAAA 15123 37 100.0 36 ..................................... TTGATATGCAACAAGAACTTGACTTGCAATCTCAGT 15196 37 100.0 33 ..................................... AAAGAACTGACCGAAGAACTAAAACTCGAAAAA 15266 37 100.0 40 ..................................... ATCGGGGCTTTCTCTAAACCAGATGCAATCTTGCCAGTGT 15343 37 100.0 33 ..................................... TCATCTAACCAGCCAAGGCCGCAAATACTGAGA 15413 37 100.0 33 ..................................... CGGTTGATCGATTCTGCTGGTGTCCGAGGTATT 15483 37 100.0 33 ..................................... TTGGGCCCTAACTTTGAGTACAAGTAAGTTTGA 15553 37 100.0 40 ..................................... TTTTAAGCGATCGCCCAACTTGGAATCCCACCTAACTCTA 15630 37 100.0 35 ..................................... GTTGCCACAATTGCGGCTATAGCTTCTACAAGATT 15702 37 100.0 33 ..................................... AAAAAATATCCCCCTCGGTGTGTGAGGGGGACG 15772 37 100.0 39 ..................................... TCAACACTGACGTGGGAAAGTAGTTCTGCCGCTCCTAAA 15848 37 100.0 33 ..................................... AAAATTTATCCTAAACGAGAAATTGAATTAATA 15918 37 100.0 38 ..................................... GTTTCTCCTAATCACAATTGGGAAATGACACCTAATGG 15993 37 100.0 34 ..................................... TAAACAAAAAACTAGAACTAGATTCGATCTTACC 16064 37 100.0 38 ..................................... GAATTTGTATTTCCCGTCTATTGAAACCGCTGGAATTT 16139 37 100.0 34 ..................................... CACCTGTTGCTTCAAGGTAATTCAGGATTTTAGC 16210 37 100.0 43 ..................................... GCGATTCTCGACATCCAGAATGGAATTCTGGTAAATGGGAAAA 16290 37 100.0 41 ..................................... CGCTCCAACCATGAATGCCAACTTGCCAAGCCCGATATTGA 16368 37 100.0 37 ..................................... AAATGGCTGTCACAAAAGAAAGTCGGGATTTCCTTTC 16442 37 100.0 38 ..................................... CAAAATCAAGCAAGCTCAATTGACCGTCATCATCTGCA 16517 37 97.3 39 ..............T...................... TTCCCCTACAACAGGCTCTACAGGGGCTTTGATTAACTT 16593 37 100.0 33 ..................................... CCTTTTGAATTTTACTAAACACATTCAAATTAA 16663 37 100.0 43 ..................................... GGGCAAGTGAACCCGCCAGCGATCGCACCAGAAGACTGAACAA 16743 37 100.0 38 ..................................... ATGTAGCAAACCGCTTGCGTGAGGCGTTAAACATTTTT 16818 37 100.0 37 ..................................... GAGAATGCTGCTTATTTAAAGCGAATTCACTCAAAAG 16892 37 100.0 38 ..................................... CTCCCCAAGCTTTTGAGGATGACATGAAAAATTCTACT 16967 37 100.0 33 ..................................... GCGCAAGCGTTGCCACTTCTAAAATTTGCAAAA 17037 37 100.0 41 ..................................... TCGATATTATTCAGAAATTCTCCCCGGCACTGTCGGTACGA 17115 37 100.0 36 ..................................... TTAGCATCACCACCTCCCCACTCTTTTCCTAACATT 17188 37 100.0 36 ..................................... GTATCAGAAAAAGTCGGAACCGCTCAGTTAATGTTA 17261 37 100.0 32 ..................................... TGGAAGCGCGATCGCCGGTGCCGCTCTGGGAG 17330 37 100.0 35 ..................................... CTCTCGGTCACTGGGTCGTAATCCCCCAGTATTTC 17402 37 100.0 35 ..................................... TGGCTGCTGAGCCTCAAAGAATTGATCCGCGCAAT 17474 37 100.0 36 ..................................... TCCTGGCATTCATCCACGGCCAGCATTCTAAATTGC 17547 37 100.0 35 ..................................... AAAGATTCTCATATCGAATACCCGATTTTCTTTAC 17619 37 100.0 38 ..................................... CTCTTCTATGACTCTGTGGAGCATCTCTAAAAGTTCAG 17694 37 100.0 38 ..................................... AAGCTTGATGTACTCGAAGGGCCACGTCAGCGGATTTA 17769 37 100.0 37 ..................................... TTCCACCGCAAGCGATTACAGCGGCCAAAATCTCGGA 17843 37 100.0 33 ..................................... TGTAATCGCGACCAGCCACCCGCTACTGGTTGG 17913 37 100.0 37 ..................................... TTGAAGTATGGCGAAGTTACATCTAAGGGGCAAAAAA 17987 37 100.0 35 ..................................... CAATTCTGGTAAATATCCACTGCCACAAGGCACGA 18059 37 100.0 34 ..................................... TAGAAAAATATCGGCATAAATCTTGCGGCCAAAA 18130 37 100.0 38 ..................................... TTGGTGGGCTGATTTTTTTGGCAAGGTGGCACTGTGCC 18205 37 100.0 33 ..................................... ACGTGGGCGATCGAGCAAAAAATCATAACTAAA 18275 37 100.0 44 ..................................... GCTATGTTATAGGTCACGCTCCGTCCCCCGCCCGGTCGCAATAA 18356 37 100.0 36 ..................................... GGAAATGAGTATGATGAACCCACCACTATCGAGAGC 18429 37 100.0 38 ..................................... CTGAATCCTCACTAAAATCATTGATGCGAAGCTCGTCT 18504 37 100.0 33 ..................................... CAATCTTGGTACAGCAATCTAGACTCTAGTATT 18574 37 100.0 36 ..................................... AGAAATCTGAAAATTAAAATTCCAGATTCGCTGGAC 18647 37 100.0 43 ..................................... AAAGCGATCGCCTATTGGCTCAATCCCCACTAGCGGCAAAATT 18727 37 100.0 37 ..................................... TTCAATTTCCTCAACACTCTGGAAAATTGCAAATCTG 18801 37 100.0 34 ..................................... TGAGCGGGAGAAAGCTCCCACTCTTCACTTTCAA 18872 37 100.0 37 ..................................... ATGGCCAAATATGGCCATATTTTTTCTACAGATCCAT 18946 37 100.0 34 ..................................... GGAAATGAGTATGATGAACCCACCACTATCGAGA 19017 37 100.0 36 ..................................... CTGGGAATTCCTTACCGCAAGCCCTACGCCACCCGA 19090 37 100.0 31 ..................................... TTAGCTTTAAGTACGATCGACCCGGCAGTGC 19158 37 100.0 33 ..................................... ACTGAGATTTAAGAAATCCCAAGAATTCGACAA 19228 37 100.0 39 ..................................... TGAATTTCTGGAATATGGGAAAACCGCAACCGCGGGCAA 19304 37 100.0 35 ..................................... GCGTTTGGGGTGAAGCGTTAGGCAGCATGGTGGGG 19376 37 100.0 35 ..................................... CGGTGCTTCTGCTGTATCAATGGGAACTGTGGGCC 19448 37 100.0 42 ..................................... ACCTTGAGCTTGCCGAATTTCAACAATCTTACGCAGTCGCAA 19527 37 100.0 41 ..................................... TCGGCGCTTCAGGTAACCAACCGCATTTGAAAGCTTCACCA 19605 37 100.0 34 ..................................... GAATATTTGCTTTCAATTCCTGATTCTTGTGTGC 19676 37 100.0 33 ..................................... CACTGAACCAGGCGTGAGAAAGTGAGTCGATAA 19746 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================================== ================== 269 37 99.9 36 GTCGCAATAAACTCCACTCCCTACTAGGGATTGAAAC # Left flank : TTGGTAAAATGGAGGTAACATTTTCTATAGATGGGGTTGTTTAACGATATTGACCCCATCTTTTTTTACCATAAATCGGTCAAACCTTTGTTAGCTATGGGTTTTAACGGGGTTGTCACCCCGTCAGCTTTTTGGCTTTTGACCATCTTGGATACCGCGAGCGAG # Right flank : GGAAATTCAGAAAATCACAGCTCGCACAAAAGTTAGACGAGGGTGGCAATAAACTCCACTCCCTGACGGGGTGACAACCCCGTTAAAACCCATAGCTAACAAAGGTTTGACCGATTTATGGTAAAAAAAGATGGGGTCAATATCGTTAAACAACCCCATCTATAGAAAATGTTACCTCCATTTTACCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAATAAACTCCACTCCCTACTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA //