Array 1 193249-192547 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYVN01000015.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CVM N31414 N31414_contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 193248 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 193186 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 193125 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 193064 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 193003 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 192942 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 192881 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 192820 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 192759 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 192698 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 192637 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 192576 29 96.6 0 ............T................ | A [192549] ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 210817-209508 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYVN01000015.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CVM N31414 N31414_contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 210816 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 210755 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 210694 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 210633 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 210572 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 210511 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 210450 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 210389 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 210328 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 210267 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 210206 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 210145 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 210084 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 210023 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 209962 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 209901 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 209840 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 209779 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 209718 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 209657 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 209596 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 209535 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGGGGATAAACCGCGCATTACTACCGGGATTAGTACCTATCAAA # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //