Array 1 21162-21800 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXER01000079.1 Salmonella enterica subsp. enterica serovar Braenderup strain N32758 NODE_79_length_21812_cov_2.28819, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 21162 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 21223 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 21284 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 21345 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 21406 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 21467 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 21528 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 21589 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 21650 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 21711 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 21772 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : AGATTGGCTATA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7-522 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXER01000114.1 Salmonella enterica subsp. enterica serovar Braenderup strain N32758 NODE_114_length_7086_cov_2.14037, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 68 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 129 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 190 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 251 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 312 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 373 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 434 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 495 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 9 29 97.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCGGTGG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9739-11845 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXER01000080.1 Salmonella enterica subsp. enterica serovar Braenderup strain N32758 NODE_80_length_21425_cov_2.30752, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9739 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 9800 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 9861 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 9922 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 9984 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 10045 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 10106 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 10167 29 100.0 32 ............................. CTAGGCACTAACTCGCAGTATCACTCCCTGCC 10228 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 10289 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 10350 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 10411 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 10472 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 10533 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 10594 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 10655 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 10717 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 10778 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 10840 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 10901 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 10962 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 11023 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 11084 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 11145 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 11206 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 11267 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 11328 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 11389 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 11450 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 11511 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 11572 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 11633 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 11694 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 11755 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 11816 29 89.7 0 A...........TC............... | A [11842] ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //