Array 1 418719-420213 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025003.1 Dickeya fangzhongdai strain DSM 101947 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 418719 29 93.1 32 ............AG............... TGAGGTATACCCGTCAGCCAGTTGGCGTTGCC 418780 29 93.1 32 ............AG............... CGTTGTCATGAATCTCTGGTGGTATTCGTCAC 418841 29 93.1 32 ............AG............... GGCAGACCCGCCAGCTGGCAGGACTCCGGGAT 418902 29 93.1 32 ............AG............... AGCTGCCGGAATTACAGCCGGACGGACACGGC 418963 29 93.1 32 ............AG............... CTAACCAGCGCATCAAACTGGTTCTGCGTCAG 419024 29 93.1 32 ............AG............... CGGTTTACCTGTTGCCGTACAGATACCGCTGT 419085 29 100.0 32 ............................. CATACGTTGATTCGGTTATTACCGGGGCTGTA 419146 29 100.0 32 ............................. TACGCCAAATACAATCCAGAGTACCAGCATGC 419207 29 100.0 33 ............................. TATGCTAGGTAGCTGGTACTCATGGCAATGAAC 419269 29 100.0 32 ............................. GGCCTTGCTGCGTACGCCCTCACCGAGGCTGT 419330 29 100.0 32 ............................. TGCGCTAGACACAGCACAGTAGCGGTACAGCG 419391 29 100.0 32 ............................. AGCGACCGCGCAGGCCGTAGCCACCTCTGCCC 419452 29 100.0 32 ............................. CCTTCTTTTGAACAACGCACGCATCAATCCTA 419513 29 100.0 32 ............................. CTCATCGCGGCCGACCAGGCTCGTCTGAAAAC 419574 29 100.0 32 ............................. CTGACCGGTATCAAGACGGAAAATCAGGAAAA 419635 29 100.0 32 ............................. GATTACGAACGGCACTTATTCCGAGCGGGTAA 419696 29 100.0 32 ............................. GATGCAGCAAGACAGATATATATTTCTTCCGA 419757 29 100.0 32 ............................. CTACTCCTGGCGAACTTCCTCTTCCTGTAACA 419818 29 100.0 32 ............................. CGTAACATCCTGACCAGCACCTTTATCCCTCA 419879 29 100.0 33 ............................. AGATTCACGAGCTTAACGGCAAAACTTACCTGC 419941 29 100.0 32 ............................. GTTGATGCCATCATTGCAGAAAACGTGTCGCT 420002 29 100.0 32 ............................. CACGTCAACAACGGGTTGTCTGTTCCACCGAT 420063 29 100.0 32 ............................. ACCGGGGCGCGGTGCGTTCAGTTTCTCAGCAT 420124 29 100.0 32 ............................. CGGGCGGCCTCTTTGCGCATCAGCTCAATGAT 420185 29 96.6 0 .........................C... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTGAAGACGTGCTGGCCGCCGGCGAGATCGCGCCGCCACAGGCACCGCCGGACGCGCAACCGCCGGCCATTCCCGAGCCGACGCCGTTTGGCGACGCCGGTCACCGGGGGCATGGCGGATGAGTATGCTGGTGGTGGTCACCGAGAATGTGCCGCCGCGCCTGCGCGGTCGGCTGGCGGTCTGGCTGCTGGAAGTGCGCGCCGGCGTATATGTGGGCGACACCTCGCGTCGGGTGCGGGAGATGATCTGGCAACAGGTGGTGGAACTGGCGGAGCAGGGCAACGTGGTGATGGCCTGGGCCACCAATACCGAATCCGGTTTCGAGTTCCAGACCTTCGGTGAAAACCGCCGGATGCCGGTGGACCTCGACGGACTGCGGTTAGTCTCATTTCACCCTGTTGAAAATCAATAGGTTAATGTTCTTTAACAACCGGGTAAAATCGGTGGAATTTTCCTGCCTTTAAAATGCCTTATAAAACAGGTATATACTTTTAGA # Right flank : GTTGATTAAGATAGCCTGATCGGCGGCCGGTTACGAAAAGCCACTACCCAGGTTTGGGTTAAAACGCGTGCCAGTCGTCCTCGCTGCCTGATGCCTTGCCCGAGGATGCCGCCGGTTTTAACGCCAGTGTTTTCGCGGCGGGTGGGGCTGAAAGCCGGGGTTTGTTGCCGGGTGCGCTATAAGCGCGGGGGCTGGTTTCTTCCTGATGGAAGATGCTGACCACCTGTTTTAACTGTTCGGCCTGCTGTTGCAAGGCTTGCGTGGCGGTGTTGCCTTCTCTGACCAGCGAGGCATTTTGCAAGGTGGTTTGCTCCATCTTATTGATCGCCATATTCACCTGTTCGATGCCAAGCGACTGCTCCTGACTGGCGACGCTGATTTCCCCCACCAACTCGCTCACTTTGCGCACGCCATCCACAATCCCCTGAATTGAGGCGCCGGCTTTTTCCACCAGTTGGTTCCCGGCGTCCACCGTTTGTACCGAATGACCGATAAGCTCT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGAGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 768198-769265 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025003.1 Dickeya fangzhongdai strain DSM 101947 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 768198 29 100.0 32 ............................. CGTTACACCCGAACCACCGCCTGTACTGTGGC 768259 29 100.0 32 ............................. TTGGTGCCCGTAGAACCCACGGAGGAAATGGT 768320 29 100.0 32 ............................. ATGTTATTGCTCTTTTTGGTGATCCATCAACA 768381 29 100.0 32 ............................. GTTCGTCGAAAATTACGCTGACAGTTCTGGTC 768442 29 100.0 32 ............................. GTAGCTCAAGTGACCGAGGCTGTTCGTGAGAT 768503 29 100.0 33 ............................. CCTGAGATCGTCTTTACTCATCGCCCTGCAGGC 768565 29 100.0 32 ............................. GGGGTTAATTTGAATGAGGTAATTACATTAAT 768626 29 100.0 32 ............................. AATAATGAATAATCTTCGATCACTATTCATCA 768687 29 100.0 32 ............................. ATTCGGATGCCGTTGCCAGCATCCGAAAATGA 768748 29 100.0 32 ............................. TTCTGACAGGTTGAGCGCAACCATGTCACGCT 768809 29 100.0 32 ............................. GGACTGATAATGCCAGCGCAACAGAGCAGGAG 768870 29 100.0 33 ............................. TTCTGAACGTCAGTAGGTTTAATATTTTTATCC 768932 29 100.0 32 ............................. CTCATCGCTCAGCTTTTTCCAATGCTCTTCAG 768993 29 96.6 32 .............T............... ATGGCGACCAATCCAACGGTTGCATTAGCTCG 769054 29 100.0 32 ............................. CGTGCTGTGACGCTGAATCAGAATAAAGTTGT 769115 29 96.6 32 ..........................T.. ACTATAAACTGATGCTATAACTGGTGAAAAAT 769176 29 100.0 32 ............................. CTACCGCGATTTTCTGCGCCTTGAACTGATAC 769237 29 89.7 0 .............T...........G..T | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTCTGAACAGGGGCATAAAATCGGTAAGCGTCGGAGGCTGGTGCTGCACCAGCCTTTCTTTTTGCATTTTGCTTAGCTGTTTGACGCGATATTCCCATTTCAGCGCGGTGGAACGATCGCCCGCCACGCAGTGATACGCTAGCGTCAGCGGTCCTTTGCCGCGCAACGCGCGCGCTCCTTTCCCGGCCTGATGCTGCGCCAGCCGCCGCGTCACGTCGGTGGTGATGCCGGTATAAAGCAGCCCGCTGTCGGTGCGCAGCAGGTACAGAAACCATGTGGTCTCACTGTTTTTCACGTCATTTCCTTTTCGTGGGTCAGCGCTTATCTTACGGTGATATCTCGATAAAGGCTGCCTGTGCTGCCGTATTCGTCGGTGGCCGATGGTGGAAAAATTTGAGGCTTTTATTTATCAATAAGTTAGCGCTCTTTAACAACATAAAAAAGTTGGTGGAATTTTTCAGGTTTTAAAAGTCATTAAAAAACAAGTATATAGTTTTAGA # Right flank : TGCATTATCAGGCTTCATATAATTCGATACAGTGCTTACCTTCTTTGGTGTTACAATATTCACACAAATGATGATTTATGTGCATTTAATTTCTTTTTGATGTGAATAAAATCACATAACAGAGTGCGTTATCAGGGTGAAATGCCCGGAAACGCAATAGTGTGGCTGAGAGCGGGAGTGTTGTATGAGTGATTTGACTGCGGCGGCGCAACGCGCGCTGGGACTGATGGATTTAACCACCCTGAATGACGACGATACCGATGAGAAGGTGATCGCCCTGTGTCGTCAGGCTAACAGCCCGGCGGGAAAAACCGCCGCCATTTGTATTTACCCGCGTTTTGTGCCGCTGGCGCGCAAGGTGCTGCGCGAGCAGGGCACGCCGGATGTCCGCATCGCTACCGTGACCAATTTCCCGCACGGCAACGACGACATTGACATTGCGCTGGCGGAAACCAATGCGGCTATCGCTTACGGCGCCGACGACGTGGACGTGGTGTTCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4064803-4065191 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025003.1 Dickeya fangzhongdai strain DSM 101947 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4064803 28 100.0 32 ............................ ACATAGTCATAGGCCCCGAACGCGGTTTCGCT 4064863 28 100.0 32 ............................ CATTCGATGATCTCAGTAAGTTGGGCGTTATG 4064923 28 100.0 32 ............................ GTTGCCCTCGGCCAGACCATTCGGCTCATTAA 4064983 28 100.0 32 ............................ TACGACACCAACATCTGGCCGGCGCCGATCAC 4065043 28 100.0 32 ............................ GCAAGCCCAGTGTGCCAGCCAGCAAAAAAGCC 4065103 28 100.0 32 ............................ CGACCACTTGGCACGATTGCCACGTGATTACA 4065163 28 75.0 0 ............AC.......A..TCCC | A [4065184] ========== ====== ====== ====== ============================ ================================ ================== 7 28 96.4 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : CGGAAATCCCACCCATAGCAATATCGCACTTGCCGGACTGAAAATCCGGCATCAGGGTTTTCCAGCTGGTTTTTATCCACTCTACTCTCACGCCCAGGCTTTTAGCCAGCGATTGCGCCATAGCGATATCGATCCCTTCGTAATCGCCATTGGCGCTCAGCGACGTGTACGGCTTATAGTCGCCGGTGGTGCACACCTTCAGCCCCCCTTGTTCCTGCACCTGATCGAGATGAGACGCGGCGCCGGCGCTGCCGGCCAGCCCCAGTAACAGAATGAATGAAAACCGTTTTTTCATGATAGTTCCTTGCAAGTCACGCCTGTCTGGCAAAAGCGTCACTGTAGCACGCCGCTTCCTCGCCCACCGATTTTGACCCTTTTTTTTCGCCCGTTTATAACTATCTGATTTTTAAAGATGATAACGATCGGCTTTAAAAAAGGGTTTTCAGACAAAAATCCTCGTTTCTCTTTTAAAATCAGCCCACCAGCGATAAATTGCTACG # Right flank : CGCTGATGCCGTTGCCCCGGCATCAGCGGATTCAGGTTTATTCAGCCACTAGTGCGCGAACCGCCCCTCTTTTCTTTTTGATGGCATAACCGGCGGCCAGCGCCAGCAGCCAGAACGGAATCAGCCACACGGAGATCTGGATGCCCGGCGTCATCGCCATGATCACCAGAATCCCGGCCAGAAACAGCAGGCACAGCACGTTGGTAAGCGGGTAGCCCAAACTTTTGAAGCGGGTTTGCTGTTGCGCGCGCTGTTTGGCCTGACGGAATTTCAGATGGGTGATGCTGATCATCGCCCAGTTGATCACCAGCGCCGACACCACCAGCGCCATCAGCAGTTCAAACGCCTTGCCCGGCATCAGGTAGTTGAGCAGCACGCACAGCGCCGTCGCCAGCGCCGAGACGCCGAGCGACACCAGCGGAATGCCGCGGCGATTGACCGTCAGCAGTGCGCGCGGCGCGTTACCTTGCTGCGCCAACCCAAACAGCATACGGCTGTTG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 4070704-4069954 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025003.1 Dickeya fangzhongdai strain DSM 101947 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4070703 28 100.0 32 ............................ ACGACATGGATGCAACATACGCACAAAACGTA 4070643 28 100.0 33 ............................ ACTGGGCTAAATTTTGTCTCCCCGATATTGTCA 4070582 28 100.0 32 ............................ TACGTGCAGCACCGGACCCAGGTCAGCCAGGC 4070522 28 100.0 32 ............................ GGAGTACACCCACGCACCGAACTGGTCCAGAA 4070462 28 96.4 32 ............A............... GCATAGGATATTAGTCACATGAAAACCATCAA 4070402 28 96.4 32 ............A............... GCCGCCGGCGTGGTCGGTGCGGCGCTGCCGGA 4070342 28 96.4 32 ............A............... GCCGCCGGCGTGGTCGGTGCGGCGCTGCCGGA 4070282 28 96.4 32 ............A............... CAATCCTCAACTTCGCGTTTTAACTCCCTGAT 4070222 28 96.4 32 ............A............... ACTCAGGATAAGCCATGACGCTTTGTCTTATT 4070162 28 96.4 32 ............A............... AACATCCATCGGGATGATCGCTGCAGCGAATC 4070102 28 100.0 32 ............................ TTGTTGTGCGGGCTGCGTTGTTGAGGCCGCCA 4070042 28 100.0 32 ............................ AGTCAGGAGTTACACAAAACTGTTCTGAAAGG 4069982 27 78.6 0 ....T.......AC.........-..CG | GG [4069959] ========== ====== ====== ====== ============================ ================================= ================== 13 28 96.7 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : AGGAACTGGCGGCGCTGGAGCAAACCGGCTGGCTGAAAGGGCTGCGCGACTATACCGCCATTACCGAGCCGCTACCGGTGCCGGCGGGGGCGAAGCACCGCATCGTGCGCCGGGTGCAGGTGAAAAGCAGCGCTGAGCGACTGCGCCGCCGGGCGGTGAACAAAGGCCGGATGACTGAGGATGAAGCCGCTGCCCGCATTCCCTATGCGGTGGAAAAACGCACCTCGCTGCCGTATCTGCCGCTGCGCAGCCTCTCCAACGGACAAGCGTTTTTACTGTTTGTCGAGCACGGCCCGTTGCAGGACAAACCGGTCGCCGGAGCGTTCTCCAGTTACGGGTTAAGCGCCGCCGCCACCATCCCGTGGTTTTGACCCTTTTTTTGCGGCCAGAGCTAACGTATTGATTTTAAATACCGAAATCTGGCCGCCAGAAAAAAGGTTTTTTTCGTCAAAATAGCGTTTTTTCTTTAATAATCAGGTGATAAGCGATAATTCACTACA # Right flank : GGGTTTCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTCACAGGCGGCCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTAGCGGCGTAGTTTAGCCTCCAGCCAGTGGTCAAGGAGAGGCGGCGTTTGAGCCTATCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACACGGTTTATCCCGCACGAAATGACTCGCTACCCCGGCATATATTCACCAGTAACTCAAACTCCCGCTGTTTTTCAACAGCCCCATTCCCGCACAGGAATAAAAAAATCCCCCACCCGTTACCGGCTGGGGGAAAAGGCGTAAAAAAGTGAAAGGAATAACTTACTGTACGGCAGCGAAGGCGGCAGCCACGCGCTGCACGTTGTGATGGTTTAAACCGGCGATGCAGATACGGCCGCTGGCGATAAGGTACACGCCGAACTCTTCGCG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 4079257-4080187 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025003.1 Dickeya fangzhongdai strain DSM 101947 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4079257 28 100.0 32 ............................ TGGAAGATATCCGCGCCGCCTTACAACAGGCA 4079317 28 100.0 32 ............................ TGGAAGATATCCGCGCCGCCTTACAACAGGCA 4079377 28 100.0 32 ............................ AAAGGTAGCACCGAGCACGCCATAAAGACGGA 4079437 28 100.0 32 ............................ GAATTCCCTGATACAATATCAACCTTATTATT 4079497 28 100.0 32 ............................ ACCCAGCGCCATTGATGCCCCGCCCATGATCA 4079557 28 100.0 32 ............................ GCTGATACGCTGATCCGCCGAGAAATCCCGGA 4079617 28 100.0 33 ............................ GAAAGAAATTACCCCCGAAGTCAGTAACTACAT 4079678 28 100.0 32 ............................ GTATTCAACAAACCGGGTGGCGGTCTGGTCTA 4079738 28 100.0 33 ............................ AGCGGCTTGAATCCGCATTTCGGGCAAATGTAA 4079799 28 100.0 32 ............................ GTTCTTGAAATGGATGCATCGACACAGAGGGC 4079859 28 96.4 32 ........T................... ATTGCGATGATTTTCACCAGGTTGCTATCCCC 4079919 28 100.0 32 ............................ TATGCCGCACAAAGACAAAGGCCATGCTGGTA 4079979 28 100.0 32 ............................ TTGCCATCAGCAATCTGGTCGGCAGTGTTCAA 4080039 28 100.0 32 ............................ TGACTGAAGAAGCCACCATACCAGAGCAGACA 4080099 28 92.9 32 ...........GA............... TCTTACCCTCATTCAGTGGTTTCATTCATGCC 4080159 27 82.1 0 ....................A..G.CG- | GG [4080180] Deletion [4080186] ========== ====== ====== ====== ============================ ================================= ================== 16 28 98.2 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : CGTCACCGAGGTGCCGGTGCCGAGCATCACCACGCTGGTATTGGCGATAGGGATATTCCAGTACAGCGACTGATTTCCTTCTTCAGTGACATATTCCACCCGTCCGCCATTCACCAAAATACGGCAATGCTGGAGGTAATAAATATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGACGGGCTGAATACGTTATCCATAAAACAGACTCTCTGCCGCAGTGATAGACAAACACCACCCGCGTAATAAAACGCAGGCTAATAATGAATTAGAAAACACGTAATCTACTGGAAAGTAACGAAAATCAGCCTAGCACAGCCCAAACGGGAAAGTGAATGACGCCAGAAACACTTTTCCCGCTTCGATACCCTTTTTTCAGCCGCCTTTTTCGGCATTGAAAAATCAATAAGTTACCGAGGGCCGAAAAAAAAGGGTCTGACGGCGAAAATCGCCAATTGTGGGCCGAGATACAAAGGGTTAGAGTCAACGAGCTACA # Right flank : GGGGTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTCACAGGCGGCCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTAGCGGCGTAGTTTAGCCTCCAGCCAGTGGTCAAGGAGAGGCGGCGTTTGAGCCTATCCTTGTCGTGCGTGCGATGATGTAGCAAAGAAACGACTCTGTTTATCACGCACGAAACCCTTCACAGCACCGACATGTTCTCTCTATCCTCATCCGGCAGTATTCCCTCCCCCACTCGGGGAGGGAAATATCACTCAGAACGACGTCCAGTCGTCATTGCTACCAGCGGTGGCGGCGGCACGTTTTTCAGTCGCAACCGGGCGAACGGAAGCGGCAGACGGCAGCGCGTGGGATAGCGCCGCCGTCCGACGGGCCGGCGACGGCGCTCCGTTGCTGCCCTGCGGCGTCAGGCGGAACGCGCTGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //