Array 1 4704-5872 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFMC01000133.1 Pseudomonas oleovorans strain East River isolate A planktonic Contig_34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4704 28 100.0 32 ............................ CCACATCACCCTGACGCGCGCAGACGGCGACC 4764 28 100.0 32 ............................ GAATACGAACATGCCGAGGGCCATCATCATGG 4824 28 100.0 32 ............................ GTCGAGTGATCCCCGCAGCCCGGCTCCGGCCG 4884 28 100.0 32 ............................ TGAGTGAGCCGTTTGCTGATGTCGCCCAGGGC 4944 28 100.0 32 ............................ TTGGCGCCCAGCAGTGCCTTGAGGCCGGTGTA 5004 28 100.0 32 ............................ TTGTAGGTGCCTTTGTCCACCAGGCCGGTGTC 5064 28 100.0 32 ............................ GCCACGCCTACCAAGGCGCTCAATCAACAGTT 5124 28 100.0 32 ............................ AGAACACCTATGGTGCTCGCGTCTGGCTGGAG 5184 28 100.0 32 ............................ AAGTTCCCCGACAAAGCGCAGGAGGTCGTCAC 5244 28 100.0 32 ............................ CGATCACGCTCAGCAGCAACGGCGGCGCCTGG 5304 28 100.0 32 ............................ GCATCACCGGCCACGCGCACGTCAACAGCCGC 5364 28 100.0 32 ............................ GGCACCGTCCACCACTTCGATCTCGGCCTGTT 5424 28 100.0 32 ............................ GGCACGTAGCGGAAGTCAAAGAAGACCTCCGG 5484 28 100.0 32 ............................ TGTTCTGACCATCATGCTGGCGGGCGAAGACT 5544 28 100.0 32 ............................ GCCACCAACCAGGCCATGGCCCAGCAAGAGGC 5604 28 100.0 32 ............................ TTGAAGGCTTCGCCATTGGTGGCGCCGCACTG 5664 28 100.0 32 ............................ ACGAACTGCTGTGCGGCTCCGGCCATAGCCTC 5724 28 100.0 32 ............................ CGCAGATGATGGCGAAGCCGCCGCCGGTGTAG 5784 28 100.0 32 ............................ TGCTGCAGAACGCGTTGCATCCGCTTGCGCTC 5844 27 82.1 0 ......................TT.CG- | AA [5865] Deletion [5871] ========== ====== ====== ====== ============================ ================================ ================== 20 28 99.1 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : AGCGCTGGATAAGTTGCTGGCGCTGAACTGGCTCAGCGGCATGCGCGACCACTTGAACCTGGGTGAACTGGCGCCCATCCCGGCGAAGGTGCGCTGGCGCTGCGTCAGCCGCGTACAGGTGGACAGCAACCCGGAGCGCGCCCGCCGCCGCCTGATCAAGCGCCACGGCATCAGCGAAGCAGAGGCGCGCCAGCGCATCCCCGACAGCGCCGGCAAACGCTGCGACCTGCCTTATGCCACCTTGCGCAGCAACGGCAGCGGTCACAGCTTCCGCCTGTTTATCCGCCACGGCCCACTGCTCGACAAACCCACCCCCGGCACCTTCGGCGCCTACGGCCTTAGCGCCCAGGCCAGCGTGCCCTGGTTCTGACCCTTTTTCCCAGCCCAAAACGGAGCCCTTGCAAAATCAAGCACTTGCAAGCGGCTCCGAAAAAAGGGGTAGCACCGGAAAAATCGGGCAGGTTCTTTAACAATCAAGCCGTTAGGGTTATTAGGCTCTA # Right flank : GCGCACTTCGCTTCGCTCCTGAGCCCGCCCTACGCAAAAATCCGTGTCCGGAACCAAGCCGCCGGTCTAAGCGGAATCGCAGATACGACTCGCTGCCGCACGGACTTTCAGGTGTCCAAACTACGAAACATCACATGGCAATCCACCAGGCCATACCGGGCGTGGCGGTAGGCCTTGGGCAAGGTGCCGACTATCGCGAAGCCGTGTTTCTGCCACAGCGCGACCGCGACCTCGTTGGTGGCCACCACGCTGTTGAACTGCATGGCGCTGAAGCCCAATTCACGCGCCACCTGCAGCGAATGGGCGCAGAGCCGGCTGGCGATGCCGCGGCCACGGGCGGCCGGGGCGGTCATATAGCCGCAGTTGCACACGTGGTCACCCGGCCCAGCGGCATTGGCCTTGATGTAGTAGGTGCCGAGAATCTGCCCGTCCTGCTCGGCAACGAAGGTGGCGCGCGGCAGTTCGACCCAGGTTTTCCAGGCCGTCTCACGATCCATGTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 30986-31435 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFMC01000093.1 Pseudomonas oleovorans strain East River isolate A planktonic Contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 30986 28 92.9 33 .C..........A............... AGTTCCAACCAGGCTTCGACGAGCCTACGACAC 31046 28 96.4 33 ............A............... TGACCAACTCCGTCATCAAAGGCGAACAGCATC 31106 28 96.4 33 ............A............... ACGTCCCACGCTTTCATCACCAGCTGGGTTTTC 31167 28 100.0 32 ............................ TGGTCGAATCCGCCCAGCTCTACGCCCCGCCC 31227 28 100.0 32 ............................ TTCATGTGCGCGGCGCGTGGCTTGATCTTCTC 31287 28 100.0 33 ............................ GATCACGGCCAAACGCCCGTCGGCCACCATCAA 31348 28 96.4 32 ...........T................ TGCACGCAGAGGCCGAGTCGCTGCGGACTGAG 31408 28 75.0 0 ...........TA........C.GCC.C | ========== ====== ====== ====== ============================ ================================= ================== 8 28 94.6 33 CTTCACTGCCGAGTAGGCAGCTCAGAAA # Left flank : GTAAGCGGCCAACGCCGACAGCAGCAGGTGACTCAGCCAGAACGACACCGATTGACGCAACAAACTGACGTAGTCGACCTCATCGATCCGACCCCAGGTAATCAATGTGATGACAATGCCGATCACCCCGACCGCCAAGGCAACCCAAGCCACGTGGCGCGGCAATGCCGGCCACTCGCCCGGACTGGAATTCACTGCCGCAGCCGGCAAAGGTTCGAAGGGATTGGCTTGGCTCATGAGGTACTCCCTGTCGAGGTCTGAATCCATCGAAACGCGAGAGTACCGCCCCTCCCAGCAGGGCAATAGCTCGAGATGGCAGAACTGTGCGGTATGGCCAGACAACGGTCAGCACCTACAAGGCATGCCCATACCCATTTTTCTACGACGGACAAATCGTCTTTTAAAAATCAATGAGTTGCCGGATGACGAGAAAAAATGGTCAACCACCACCGAATCCCGCCATACCTTGAGCGATGCAAGTTTGCCGGCTATCGCGCCTA # Right flank : CTTGGCAGCCACAAGCAAAAGGGCTTAACTGCCAGCATTGTTTCAGGAGCCCCTCATGGACGACATCAGCCCCTCCGACCTCAAGACCATCCTCCATTCCAAACGCGCCAACCTCTACTACCTGCAGCACTGCCGGGTGCTGGTCAACGGTGGGCGGGTGGAGTACGTGACCGACGCAGGCAAGCAGTCGCTGTACTGGAATATCCCCATCGCCAACACCACCACTATCCTCCTCGGCACCGGCACCTCGATCACCCAGGCGGCGATGCGTGAGCTGGCCAAGGCCGGCGTGCTGGTGGGTTTCTGTGGCGGTGGCGGCACACCGCTGTTCTCGGCCAACGAGATGGACGTGGAGGTCGCCTGGTTCTCGCCGCAGAGCGAGTACCGCCCCACCGAGTACCTGCAGAAGTGGGTAGGGTTCTGGTTCGATGACGGCAAGCGCCTGGAGGCGGCCAAAGCCTTTCAACTGGCGCGCCTGCAACGTATCCGCCAGGGCTGGC # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAGTAGGCAGCTCAGAAA # Alternate repeat : TCACTGCCGAATAGGCAGCTCAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 21593-22781 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFMC01000118.1 Pseudomonas oleovorans strain East River isolate A planktonic Contig_186, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 21593 29 100.0 32 ............................. GCGACCATGGCGCGCAGCGCCCAGCCAGGGTT 21654 29 100.0 32 ............................. CCCGGAGCGCGCACTAATGCACGGCCTGAACA 21715 29 100.0 32 ............................. ACCCGGAGCGCATTGGCCTGCCTGAGCATGAT 21776 29 96.6 32 ............................T ACCGGGCAGACGGCATTCAACAATCTCGACGC 21837 29 100.0 32 ............................. CCCCGATGGGCATGTTTGATGATGACCTGATC 21898 29 100.0 32 ............................. TCGTCGCGGCTGATGTTCTTTATTGCCGCGAA 21959 29 100.0 32 ............................. CGCCCCGGCGCCGTGGCAGGCAAGGAAGTATC 22020 29 100.0 32 ............................. CTGCATGATGGTTTTGCCAAGGCCAGTGTCGG 22081 29 100.0 32 ............................. CGGCCCGGCTACCCGAACGGGTAATAGTTTGT 22142 29 100.0 32 ............................. GCGCGCATCCACTCGCCAGCACGGGCATTGAT 22203 29 100.0 32 ............................. ATGTCTGCGCTAAACGTCCAGCTGAAGCTGTC 22264 29 100.0 32 ............................. CAGATGGATGTACTGCTCGAATCTGGCTACAC 22325 29 100.0 32 ............................. GTAAAAGTAAAAAAGGGGCGCAGGCCCCGAAA 22386 29 100.0 32 ............................. ACTTGCAGATCCGCCTCAAGGTGGAAGAAATG 22447 29 100.0 32 ............................. CGGATGAGTGGGAGGATGCCCGGCCATCAGGC 22508 29 100.0 32 ............................. GCGATCGCAACCAACGTCGGCAGCTATCGGCC 22569 29 100.0 32 ............................. CGCACCGCGTTGCCAGCCGCCCAACCGGAGCC 22630 29 100.0 32 ............................. CATGACGCCGCTGCGCGTGTTCCAAGCTCTGC 22691 29 100.0 33 ............................. TTCTCCCGCGCCGATAACCGATTCATCGACCAG 22753 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATGAACCG # Left flank : GGAAACCATCATGCCGCGCCTGTACCGCGAGGCGCCGGTCAACTCGATCTGGGAGGGTTCAGGCAACGTGCAATGCCTGGACGTGCTGCGCGCTATGTCCAAGGAACCCGGTGTGCTCGATGCGCTGTTCGCCGAGCTGGGTGATGGCCACGGCGATACCCGCCTCAAGGCGCACATCCAGCGGCTCAAGGCAGATTTCGCTGACACAGCCGATATCCAGTACCGCGCGCGCCGGCTCACCGAAGACATGGCCGTAGCCCTGCAGGCGAAGCTGCTGCTGGAGGCGGGCAACGCCACTGTCTCCGATGCCTTTATCGCCAGCCGGCTGGAAGGCCGTGGCCGCGTCTACGGCACCCTGCCGCGCGGTGTCGACGTCGAGGCGCTGCTGGCGCGTAGCACGCCGAATCTGCTTTGATACAGGGGCAATCTTTAACAAGGAGAAGTTGGTAGGTTTTTAGCGGCTGATTTTCTCCTTTAAGGAACAATTGGTTAGGCTAAGT # Right flank : CGCTCAAGCCAAGACGCACGAATCCTTAGGAGCGAGCTCTGCTCGCGAAGCTTCTGACTCATCCAGATTCACGAGCAGAGCTCGCTCCTACAGGTCAGGCAGTCAGGCGTATTCACCGCGGCGCACTGGTCTCCCCCTGCGCTGTTGTCAGTCCAGAACGATGCTGGCACTTTGTTGGGCCAGTAACGATGCGATGCAAGGAGTGCCAGATGAAAGGATTCGCCGATCTCAGCGAGCAGGCCCGCCGTCTTTGGGCCAAGAGTGGCGATGGCTTCGGTCATGGTGTGCTGGCGCATTTGCTGGATGTGGCGGCGGTGGCCGAGCGGATGCTGGCCCATGAGCCTCCGAGTACGCTGGACTGGGCCGCTCAAGCGCTGGGGTTGGAGCGCGAGCATGTCGCCCGCTGGGTTGCCTGCCTGGTGGGCCTGCATGACTTCGGCAAGGCCATCCCCGGCTTTCAGGACAAGTGGCTCGCAGGGCGGCAGGCTGATGAGGCGCTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 36967-40596 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFMC01000118.1 Pseudomonas oleovorans strain East River isolate A planktonic Contig_186, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 36967 29 100.0 32 ............................. GCACCGCGCACGCACAGAGGCAGGATCAGCGC 37028 29 96.6 32 ............................C GGCCCGCCACTTCCTCACCCGCGCCCTGGAGC 37089 29 100.0 32 ............................. GCCGCCGAACTACAGGCCCTGGCCGGCTTGAT 37150 29 100.0 32 ............................. CCATTGAAAACGCTGGGCTTTCTCCTTTCTCA 37211 29 100.0 32 ............................. CAGGCCAACGCCACCGCCCTCGGCATTCCCTG 37272 29 100.0 32 ............................. TTGATCGTCGACGGCAACGTTGAAGTTGAGAT 37333 29 100.0 32 ............................. CCAAGCAGGCCGACCAAATCAGCAAGGTCATC 37394 29 100.0 32 ............................. GCCATGCAGGCCAGCCGCGACAAGGTTCGCCA 37455 29 100.0 32 ............................. TCTGAATGCACCCAGTAATCGTGACCGCCGGC 37516 29 100.0 32 ............................. CCCAGCCCACCGGCGCCGGCACCGGCCGAGCC 37577 29 100.0 32 ............................. GCCGCTCCGGCCAAGCTGGAGAAAGTAAAGCT 37638 29 100.0 32 ............................. GCGTTGCAGGACCCCATAAACGGTATCAACGC 37699 29 100.0 33 ............................. CTGGTGGTGGCGCGCCTGCGCGCCAATGGCAAG 37761 29 100.0 32 ............................. CCTGCTCTTGGGCTTCTGCCAGGTGCGCGGCA 37822 29 100.0 32 ............................. GCCATGCAGGTGAGCCGCCTGCTCCTGATGCC 37883 29 100.0 32 ............................. ACAGCTACAGCCAGCTAAAGCGCGACGAGGGC 37944 29 100.0 32 ............................. GCGGCTTCCGTTTCTGGGGCTCGCGCACCTGC 38005 29 100.0 32 ............................. CGCCACCGTGATCGAGTACCAGGTCATCGCCG 38066 29 100.0 32 ............................. GTCGCCGAAGTGCTGGCCGGTACCGGCGGCGC 38127 29 100.0 32 ............................. CTGATCGTCGACGGCAACGTCGAAGTGGAGAT 38188 29 100.0 32 ............................. GCACCCTGGCCGCCGCGCTGGATGCCATCGCC 38249 29 100.0 32 ............................. GTCAGCGCACGGTGCTTGATCGTCCGGTTGTC 38310 29 100.0 32 ............................. ACGATATGGGTGCATGAGCCCAGCCGCCAGGC 38371 29 100.0 32 ............................. CGCCGGCTGAAGCTGTTACGGCCTGCCCTGGA 38432 29 100.0 32 ............................. TTGCAGCGGCTGATTCTTGTCAGGTAAGCCAT 38493 29 100.0 32 ............................. CCAACATCAGCCGGCACCTTGCCCAGGTAGGG 38554 29 100.0 32 ............................. CTCTGGACGGCCGTTTACTGCCGTGCCCTGCG 38615 29 100.0 32 ............................. ACGCCATCATGCGTATGACTGCGACGGTGGCC 38676 29 100.0 32 ............................. GTGACGGCCTTGCGACCACGCAACAACGCCCC 38737 29 100.0 32 ............................. GCGGCACGGTAGTTACTGAGCCGATTCTAGCC 38798 29 100.0 32 ............................. CCTGCCACCACTCCCCGGAAAGCTGGGGACAG 38859 29 100.0 32 ............................. GGGTACTGGACTGACGATGCCAGGGTGAAGAT 38920 29 100.0 32 ............................. ACATACAAGGCGCATCGCCTGGTATGGCTTAT 38981 29 100.0 32 ............................. CACTGGTGGCTCCTGCTCGACGACCTCAGGCA 39042 29 100.0 32 ............................. GCGCCGCCGTTGCAGGCGGCGCACTCCATCAG 39103 29 100.0 32 ............................. CCTGCTGCGGCACCCCTGCACGGAATGCCAGG 39164 29 100.0 32 ............................. GCTTCATCGGGCGTGCCAGGGTATTCCTGCCA 39225 29 100.0 32 ............................. GCCGGCAGTGCGGCGGCGTTCTTGCCGTCCTC 39286 29 100.0 32 ............................. CATCACACCAATGTAGTGGCCGCGGTCTTCAA 39347 29 100.0 32 ............................. GCCGACCCCTTCACTGTCAACCCGCTCTTCGC 39408 29 100.0 32 ............................. CTCGACGAGCTCAGCGAAGGCCTGATCGCGTT 39469 29 100.0 32 ............................. ACGGGCGCCGATGCCGGAACTGCGGACATAGC 39530 29 100.0 32 ............................. GCACTCCAGAGTGGCTGAAACTTCGCCTGGGA 39591 29 100.0 32 ............................. CAATGCGTTAACTGCCCTGGTGCGACTGATCA 39652 29 100.0 32 ............................. GCGAAGCGGTTGCCGCATTCGCTCTTAACCTG 39713 29 100.0 32 ............................. GGCTGCCCGGCCTAGCGCCGCAACCGGCTCGC 39774 29 100.0 32 ............................. AGTGGCCAAATTCGCAATATCAGACATTCATG 39835 29 100.0 32 ............................. TTGACGTGATCCTGTCCGGCGAGATCCCGAAA 39896 29 100.0 33 ............................. ATTGGCCAGCTCCAGCGCGCTGGTAGCCTTACC 39958 29 100.0 32 ............................. GTTCGCTTCCTCGCACCGAATACACCGGTGAA 40019 29 100.0 32 ............................. AGCAGCGTGTCGTTTCTATTGTGTGAGGCGAG 40080 29 100.0 32 ............................. ATCACGCATTCGGCTAAGGTGCCAGGCCAGAC 40141 29 100.0 32 ............................. ATAAGGCAGGTCAATGCCCTCGCTAAACCCTA 40202 29 100.0 32 ............................. TCTAGGCCAGCCGTTGCGCTTTTAGATGCGCC 40263 29 100.0 32 ............................. GTGCCGTAGCCTGCTGCTATATGGCCAGCCTC 40324 29 100.0 32 ............................. CCATCACCCAAGCCCCAGGCCCCCAGCAGGTG 40385 29 100.0 32 ............................. TCGGGCCTGCAGGAGTAGACGCAGGTGGAGCA 40446 29 96.6 32 ....A........................ GGCGACGTTCCCACCATAGGCCATGGCTCGAC 40507 29 100.0 32 ............................. CTGGTGTGCAATAGTCGGCCACATCAGATGTG 40568 29 89.7 0 .........................G.TT | ========== ====== ====== ====== ============================= ================================= ================== 60 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATGAACCG # Left flank : GCGAAGATCATCCCCACCATCGAAGAGGTGCTGTCCGCAGGTGGTATCTCGCCACCCGAGGCACCGCCGGAGTCCGTACCACCAGCTATCCCCAACCCGGAAAGTATCGGCGATGCCGGGCACAGGGCGCAGTAATGAGCTTTCTGGTCGTGGTCACCGAGAACGTACCGCCGCGCTTGCGCGGACGCATGGCTATCTGGCTGCTGGAGGTGCGTGCCGGCGTCTATATCGGTGATGTCTCCAAGCGCACCCGCGAAATGATCTGGGAACAACTGAGCCGGGGGCATGAAGATGGCAGCGTTGTTATGGCCTGGGCGAGCAACCACGAGTCGGGTTACGAGTTCCAGACGCTAGGCCCGAACCGTCGTTTGCCGGTGGACTTTGATGGCTTGAATCTGGTCGCCTTTCAGCCCTTGGAAAACCCTGATCTTTAACAAGGAAAAGTTGGTAGATTTTTAGCGGCTAATTTTCCCCTCTGGGGACAATTGGTTACGCTAAGA # Right flank : TGGAGGGGGGCTCGGCACGCTGTTTTTTAGCCGGGCAGGCGAGTAATCTTGCCGCCGATGGTTCTGCGTGCACGTACATGACGCGGATGAAAAGGGAATAGGGTGCGGCGAATCTCGCCAACGCCCTGGCTGCCCCCGCAACTGTAAGCGGCGAACGATGCCCTCATGCCACTGACTCCGGTCGGGAAGGCGGGCGAAGTGCCAAGCCGTGAGCCAGGAGACCTGCCATCGATAACGGGCGTTTCGCCCATCCTTCATCCGAATCGTCGCGCGGTGGGCGCGGCAAAGGAACTCGCATGCATATCGAACCCGGTGTCGTCGAAGGCGCCAAGATCCTGCTCAGCTACGCAACGGCCGTCACCGCTTTCGGCCTGACCGCCAAACTCGCCCTGGACAGCGTCCGCAACAACGGCGGTGTCGCCGCCCTGGCGCTGCGCAGCCTGCTGACCACCGCGCTGGTGTTCTGCTTCTTCGAGGTGTTTCCGCATCATGCGGTGGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //