Array 1 115333-114603 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAVX01000009.1 Corallococcus sp. AB011P NODE_9_318676_cov_31.4096, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ==================================== ================== 115332 35 100.0 36 ................................... GCGGCAGGCCCCCCGCGCTGCCCCGGGGCAGCTGGA 115261 35 100.0 34 ................................... TCAGCCGGAAGCTCCTGTTCCATCCCGATGGCGG 115192 35 97.1 34 ......................A............ TCAGCCGGAAGCTCCTGTTCCATCCCGATGGCGG 115123 35 94.3 34 .GG................................ TCAGCCGAAAGCTCCTGTTCCATCTCGACGGCGG 115054 35 100.0 34 ................................... TCAGCCGAAAGCTCCTGTTCCATCTCGACGGCGG 114985 35 100.0 35 ................................... GTGACCGGGTCCTCGGCGCTGGCTCCTGGGCGCGG 114915 35 88.6 31 .....................C....TT.G..... AGGCGGAACCCGTGATGACTCCAATTGGCGG A [114885] 114848 34 88.6 36 CG.......C...................-..... TTGGTAGGGCTCCCGGGCTTTGGCTCCGGACTGCGG 114778 34 88.6 36 ....T....C...................G..-.. TTGGCGGGGCTCCCGGGCGCTGGCTCCGGACTGCTG 114708 34 91.4 35 ....T....C...................-..... TTGGCGGGGCTCCGGGCGCTGGCCGCGGACCTTGG 114639 35 77.1 0 G...T....C...T.....C......T..C..T.. | CC [114608] ========== ====== ====== ====== =================================== ==================================== ================== 11 35 93.2 35 AAACCTGTCGGACAGTCGGACAGGTTGGGAGGACC # Left flank : GTCGGCCCTGCCGAGGCCGGACGCGCTGTTCGCGCTCGGGCTGGATGGGCCCTGGTACGCGTCGGTGCACTCGGCCTCCGCGAAGCTGGCCCCGGACGGGGGCGCGATGGTGCACGTGGCGAAGTACCTGGGCGGCGCGGACACGGAGGCGAGCGAAGCGGCGCTGGAAGCCGTGATGGACGCGCTCCAGCCGGGATGGCGCGCGAAGGTGGTGGCGCGCCGCTACCGGCCCTCGCTCACCGTCAGCGCCGGGTTGCCCCGGGCCGTGAACGGCGGGCTGACCGGACGCCCCACCGTGGAGGTCCCGCACGTGGGCGGACTGTTCCGGGTCGGCGACTGGGTGGGCGCGGAGGGCATGCTCGCGGACGCATCCCTGGCGAGCGCCGAGGCCGTGGCGCAAGCCCTGGTGCGACGCACCGAGACGTTCCAGCGCCACGCGGCGGGAACTTGAGGCCAATGGGCGTACAGGCCAGGAGCCCCTCCCCTGCGGCGCAGAGCAA # Right flank : GGGCCCGGAGGGTCTCGGTGTGGAGGTTCGGGGGCTTGGGGTACCAGGCATTGCGGTGCTCCAGTGCTGCTCCTGGATTCTTGGAACGTGAGGGCTTGAACGGGATGGATTCACAGGCGCGAGGAGCACTGGGACAGGCCGCACGCGAGCACGAGCGCTTCCTCTGGGGGCTCTGCTACCGGATGACCGGCGTGGCGGCGGACGCGGACGACCTGGTGCAGGACGTCTATGCGCGCGCGCTCGCGACGCCACCGGAGCGCCTGGACACCCTGCGCCCCTGGTTGACCCGTGTGGCGGTGAACCTGGCGCGAGACCACCTGCGCCGGCGCCGCCGCGAGGGCTACGTCGGTCCCTGGCTGCCTTCGCCGGTGGAGACGGGCGATGAGGAGGTCCTACCCGCCGTGGAGGCAAGGCTTCCGGGCGGTGGCTCGACGGAGGGGCGCTACGAACTGCTGGAGAGCGTGTCCTTCGCCTTCCTGCTGGCGCTGGAGGCCCTGTCA # Questionable array : NO Score: 2.70 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAACCTGTCGGACAGTCGGACAGGTTGGGAGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 122007-122164 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAVX01000019.1 Corallococcus sp. AB011P NODE_19_177351_cov_32.1255, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ========================================== ================== 122007 26 100.0 42 .......................... GGAGGAACCGGGTAGGGGCGCCCGAGCCCGCTGATCAGCGGA 122075 26 96.2 38 ...C...................... GGAGGACCGAGGCTCCCCCACTCCCGGTGAACAGCGGG 122139 26 96.2 0 .......................T.. | ========== ====== ====== ====== ========================== ========================================== ================== 3 26 97.5 40 AACTTGTCCGACAGTCGGACAGGGTT # Left flank : TGGCCGTCGCGCGAGGCTTCTTCTCCCGCCGCAGCGCCCCCGGTGACGAACGCGGGCCCTGGCCCGGTGACGGCGGCCCAGGTGTCTCCGAAGCGCGCGGTGCCGGTGCGGACGCCGGACCCCGCGCCGCCCCACGCCACGGTGGTGCCGCCTTCGCCCGGAGACGTGCCGCCGGAGCCGGAGGTGGCCAACGCGCCGCCGCAGCAGAACGACCCCATCGAAGAGGAGAGGCCCCAGACCGCGCGCTGGAAGCTGGAGAAGACGGAGCACATCGCCACGCTGCTGGGGCGGGACGTGACGCGGCTGGAAGGCGAGCGGCAGGAGGCGAAGTCGCGCGGGGACAAGGCCCGCGTGGAACAGGTGGACGCGCTGCTCCAGCGTCACCGCGTCCGTTTGGACGAACTGCGCGAAGAGGCCCGCACCCTGGCCGAGGCCGCGAGGAACGAGCCTTCGGAACCCTGACGGACGGGCGGGGCTCCCCGTCGGGGGCGCTCCGCACG # Right flank : TCTGGACCGTGCCGGGGGAGGTGGGCCTCATGCTCGGGGGCCTGTCGGCGGAGGTGCCCGCTCGGCTGCCCTCCAGCCGGAGTGCCGCGCCCGCTTCACGCGCGGGCCCCACCGCTTCGCGCTGGGAGTACAAGTGCTTCTGCCGGACGCGGCGCGGCCTTCACGCGGGCGTGACAGGCACGGTGCTGCGTGCGCATAGAAAAGGACGTGTCCGTTACCGCGACTGCCTCCACCGCGCCTTCCAGCACCCCCTCCACCCGAGGCTCCCGGCTGGCATCCATCGCGGTGGCCAGCGCGCTGTTCATGGAGTTCCTGGACTCCACGGCGCTGTCGACCGCGCTGCCCACGCTGTCCGTGGCGTTCGGCACCGACCCCGTCCACCTCAAGCTCGCGCTGACGTCGTACATCCTGGCCCTGGCGGTGCTCGCGCCCGCGAGCGGGTGGATCGCCGACCGCTTCGGTCCGCGCCGCGTCTTCATGACCGCCATGGTCGTGTTCCT # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AACTTGTCCGACAGTCGGACAGGGTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.20,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [23.3-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 20785-21018 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAVX01000010.1 Corallococcus sp. AB011P NODE_10_293700_cov_30.4465, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =============================================== ================== 20785 24 100.0 47 ........................ TCCGATGTCCAGGTGGAACAGGGCCCCTCCCAGCCACGGTCCTTCCA 20856 24 100.0 46 ........................ CGTGCTGCTCGGGCGGAACGGTAGCCCCAGCCAAAGGGCCTTCCAG 20926 24 95.8 45 ......T................. CGTGCCGCTCGGGCGGAGCTGCGGCCCCCTGCCGTGGCGCTCCGA 20995 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== =============================================== ================== 4 24 99.0 46 ACCTGTCCGACTGTCGGACAGGTT # Left flank : TCCAGGCCGCGGACCTGGGCTACGGCCTGGATCACCGCCACGAGGGCAAGGGCCTCATGACCGAAGCCCTCCGCGCCTTCTGCGACTTCGCCTTCAGCGCCATGGGCCTGCACCGGCTCCAGGCCAGCCACCTGCCAGAGAACCTGCGCAGCGCCGCCGTCCTCCGCCGCCTCGGATTCATCCCCGAGGGCTACGCCCGCGACTTCCTCCTCATCAACGGCCAGTGGCGCGACCAGGTGCTCAATTCGCTCGTGGCCCCCGCCGAGCCCGGCCTCCGCAGCGGCCCCTGACTCTCCATCAATTTTGTCGATATTGGAGATACGGGGCTCAAAAAGCCGCCCATTCGAGGCTTAACCGTCAATATCGACAAAATTGATCAACGGTCAGTGGCGCAACCACGTGCTCACCTCTCTCGTGGCCCCGCCGAATCCGGCCTCCACAGTCCCTGACCTGTTCCCCGAAATCCCCCCTACCCACCTCCCGCCTGAGGCTGAGTCAAA # Right flank : TTTCGCGATTCGCGCTGACAGGGTGGCCCCTCTGGGGCCTTACCTTCTCATCCAGTGGGACTGGCCTTGGTGTCCGAAGGCTTAGCGCGCCGGTGCCCGCACCTTCGGCTTCGACTCCGTCACCGCCGGCAGGTTCGCGTCGAACCAGTCCAGCGTGCGCAGCAGCCGGTCCTTCTGGTGCTCGGGCTTGCGCAGGCTGTGGCCTTCATCCGCGTAGATGACCAACTGGGTCTTCACGCCCAGCGTCTTCAGCGCCTTGTGGAACTCGTAGCCCTGCGACGCGGGCACCTCCAGGTCCCTTTCACCGTGCAGCACCAGCGTGGGCGCCTTCACCTGCTTCACCCCGTTGATGGGCGAGGAGCGCGTGTACACCTCCGGCTCGTCGTACACCGACGCTCCGAAGTACGGCAGCATCCATGAGTCGATGTGGTTCGTGCCGTAGTAGCTCTGCCAGTTCGCGATGCCCGCGCCCGCCACCGCCGCCTGGAAGCGCTGCGTCC # Questionable array : NO Score: 2.81 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTGTCCGACTGTCGGACAGGTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.70,-4.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 344400-344023 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAVX01000001.1 Corallococcus sp. AB011P NODE_1_1239138_cov_30.3833, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ====================================================== ================== 344399 26 92.3 40 .......................C.C GGGCTCACAGCAAGGGGACCACTCCCCCCAGGCCGCAGGA 344333 26 100.0 40 .......................... CGGGATCACCGCTTGGGGTCCCGCTCCATCCAAGCCGCGA 344267 26 100.0 46 .......................... GGGTCCACTGCACTCGGGGGGGCACCGCCCCATCCGGGCCGCAGCG 344195 26 100.0 41 .......................... CAGATCGCACGCTTCGGGACGGTGGCGCCACCGAGCCTCGG 344128 26 100.0 54 .......................... GGGGCCACTGCGCTCGGAAGTACTCGCTCCATCTGGGCCACCTGGGAAACCTGT 344048 26 84.6 0 CCGA...................... | ========== ====== ====== ====== ========================== ====================================================== ================== 6 26 96.1 44 AAACCTGTCCGACTGTCCGACAGGTT # Left flank : GGCACTGCTCGCCGCGACATGCGACGAGCGGCTCCTGCTGCTCGCGAAGCAGAGCCGCGAACGCGCGGAGTCCCTGCCCGCGCTTGAAGCGCTGCGCGTCTTCCTGGAGGAGCTCGTGCACTCGGCGGGCATGTACAAGGGGCTCGCGGCGTCGCTGGGCATCGTCCTCAAGAGCCACACCCAGGGCTGTGACGCGACGACGGCCGAGGGCGAGCGCCTGCTGGAGGCCGCCCAGCGCAAGGGCGAGGTGCGAAGCGACGTCCTCTTGGATGACGTGGTGTGCATGGCGATGGCCATCTCCCTCGCCGCCGCGGAGGACGCCTCGGGCCCCAAGCGCGTCCACCGCCTCACCGGGATGTTCTTCGACGGGCTGCGCTCCCGCCCCGAGCCCCGCGGCGCACGGCACCGCTGACGCGAGCGGCCATCACGGCCACGAGTTCCAGGCTCCAGATGCCTGGGACCACCGCAGCAAGGGGACCACTCCCCCCCAGGCCGCAGGA # Right flank : TTGGAGGACCGCGGCCGGGGAGCGGCCACCCCATTCGAGCCGCGGGGACCTGTTCAACAGGCAGAGCGGTTGGAGCCGTGTCGGACCCACGGTGTACAGCTTGGAGGCCAGGGGGCTTAGATTGCCGGCCCCATGAACGTCCTCGTCACCGGGGCCACCGGCCTCATCGGCAATGCCATCGCGCAGCGGCTCGTGAAGCAGGGCGCCTCCGTCCGCGCGCTCGTGCGGGACCTGGCCCGCGCCTCGAAGCTGCTCCCCTCCACCGTGCAGCTCATCCAGGGGGACGTCACGTCGCCGGGCACCCTGCCCGCCGCGTTGCATGACGTGGAGCTCGTCTTCCACGCCGCGGGCATGCCGGAGCAGTGGCATCGGGACGACTCCATCTTCGACCGCGTGAACCGCCAGGGCAGCGTGAACGTCCTGTCCGCCGCGCACGCCGCGAAGGTGCGCCGCGTGGTCTACACGTCCACCATGGATGTCTTCGCCGCGCCCCGGGGCGG # Questionable array : NO Score: 2.91 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAACCTGTCCGACTGTCCGACAGGTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 73453-73218 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAVX01000016.1 Corallococcus sp. AB011P NODE_16_209693_cov_27.3968, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =========================================== ================== 73452 26 100.0 43 .......................... GCTCAGCTACGGGAGGGGCTCCTGGTCACGTCCATCCAAGCCG 73383 26 92.3 42 .C....T................... TCCCAGCTTGAGCGGAGGCGCTCAGCCTCTTTTCCATGAGCT 73315 26 100.0 43 .......................... GCTCAGCTGGGGCAGAGGGGCCAGACCTTGGCTGGCCAACCCG 73246 26 96.2 0 ........................T. | G,GC [73223,73225] ========== ====== ====== ====== ========================== =========================================== ================== 4 26 97.1 43 GTCCGACTGTCGGACAGGTTTCCGCG # Left flank : TTCCCTCGACCGAGCCGTCAGGGGCTCCGGACGAGCGCCAGCGCGCGGACATCCTCGCTCGCTACGAATCCGGTGACGTGGCCGGGGCGTTGGCCCAGGCGAAGCGCGCGAGCCTCACGCCCCTGGTGCAGCAGCTCACCCGGTTCCAGACCGCTGAATCCGCGGCCCGGACCGCCCTGGCACAGCAGGACCGTCCCCGGGCGCTCGATGCACTCAGCGCCGCCGTTCGGGCGGACCAGGAGCTGTCCCAGGGCTGGAGCCGACAGGGCGTCAGCCTCCGCCGCCAGCTCGCCGGGCTCTACGTGCGCACGGGGCAGGATGCCGTCCGCGCCCAGCGCTTCTCGGACGCCCGCGCGGCCTTCACCACGGCCCTTCAGTACGACGCCGACAACGCAGAGGCCAGCACGCAGCTGGCAGCGCTCGAAGCGCGGGCGCCCTGAATCCGCATGGCTTCGGGCCCGCCGAGGCGCCCCCCCTCCCGGCGCGGTTTTCCAAAACCT # Right flank : CTCCGCTGACGGGGAGGCCCATGGGGCCCGGGCTCCAGAAACACGACGCCCCGGATTCCATCGAGGGAACCCGGGGCGAGGGGTGCGAACGCGGCGGCCTGGGGCCGCGCGTCACGCGGGGACTCAGGCGAGGTTGAAGATCTTCTTCAGGTCGGACTCGACCTCTTCCTCGGAGCAGTCCTTGGCCAGCGACAGTTCCTTGATCAGCAGGGAGCGCGCCGTGTCCAGCATCTTGCGCTCTCCGAACGACAGGTCCTTGTCGCCCTTGAGCAGGTACAGGTCGCGGAGCACCTCAGCGATTTCGAAGACGGAGCCCGTCTTGATCTTCTCCATGTACTCGCGGTACCGGCGGTTCCACGTGGTGGAGTCGACGGAGATGTCCTTCTCGCGGAGGATGGAATAGACCTGCTTGACGTCCTCTTCGCTGATGATCTCCCGGAGGCCGACCGAACCGACCTTGTTGATCGGGATCATGATCCGCATCCCGTTCTCCAGGATGC # Questionable array : NO Score: 2.71 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGACTGTCGGACAGGTTTCCGCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.50,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //