Array 1 11749-12289 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCYU01000051.1 Propionibacterium freudenreichii strain ITG P18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================== ================== 11749 29 96.6 42 ................T............ GGGCAATGGTTTGATCCATACCCGGAATGATCGCTCTTTCGC 11820 29 96.6 44 T............................ GGGCAATCCGCCCGTACTCTAGGTTTCTGTGCGCACACCATGAC 11893 29 100.0 45 ............................. AGGCAATACGGCAACCGTCCCTCGCCGAGCCGGGGCCTTGGTGCG 11967 29 100.0 47 ............................. GGGCAATATCCGGAGCCGTACGCCCCGGCGAAGAAGCCTCCGCCGAA 12043 29 100.0 44 ............................. GGGCAATTCCAGCGAACGTAACCGCCTCACCGTCCTTGACAGGA 12116 29 100.0 45 ............................. GGGCAATCTTCCGCACCGGGACTGTCCCCTGGCTGCCTGCTGATG 12190 29 100.0 42 ............................. GGGCAATCGTGTCTGGTGCCACCGAATCGGCGAAGATCCATG 12261 29 86.2 0 .........................NNNN | ========== ====== ====== ====== ============================= =============================================== ================== 8 29 97.4 44 GCCTCAATGAAGGGCCCCTCCAGAAGGAG # Left flank : CCCTCCGTGAGGAGGGACTTTGGCGGGTGTCGCAAATGCCCATCTATTGGCGTCAGCCTCAATGAAGGGGGCATGCCTTGCCGGCCCCGCCGGATTTAACCGTAGCGGGGGGAGCTGTGTGGGGGGCACGTCTCGGCATCGCCAGTGCGTGACGAAAACGCCTTGTCATGGCGGCTGTCAGGTCCGGAAACGCCTAGGGCTCGTGCGCGGCCACGTGGCCTTGTCAGTGAGCGCTGATCGGGGTGACGGGTCCTCGCGCGGGTGGACGAGAGGGTGGGCGGTTGGACGGAATCGGTGGCTCTTGGCGCCACCGGGGGTGCGAAAAAGGGAAGGTGGGTCAGCTGGGCGTCTGCCCTACCTCCCACCTTCTCATGGCGAGTCTAGCTCTCGGCGCCGGCGGGAGTTCCGTGAGTTTCGGGACGTTGAACGGGTGGAGGGCTTCGCCCGGGGAGAGGGGCAACGCCACGTCAAGGCGCCATCGTCTCCGAGAGCTGGCGCAA # Right flank : NNNNNNNNNNNNNNNNNTGTCGGCATAGAAATCGGCAGCCCTCTGGACGAAGCCTCAATGAAGGGGCTCATCATAATCCACGGTGTAGCTGAGGTCTGAACCCGCCGGTTTCGAGGAGGGATCTGGCGACATAGTGGGTGAGGTTGCGGAAGCCGAGGGCTGATCCGCGGAGGTGCTCGAGGCGGCCATTGATCGCCTCTGTGGGACCGTTGCTGGTGCCGGGCCGGTCGAAGTAGGCCAGCACGTCGACCGCCCGCTGCTTCAGCGTGCGGCCCAGTGTGCGGAGTTCGACCAGCGCTGCTGGGACGCCGCTGGCGAGGCTGGCGATGAGCTTGTTCATGAGGTCTCGGCCGCGAGCAGGGTCGGGGTCGCGGTAGGCGGTGACCATGCGTTGGTAGGCCGCCCAGGTGACCTCAAGTTCGGTGTGCGCCTCGTCAGCGAACAGGGCGTCAAGCCGGGTCTTCTGTTTGTCGGTGAGCAGCGATGCTCCGGTGTGCAGG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGAAGGGCCCCTCCAGAAGGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 10248-10421 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCYU01000056.1 Propionibacterium freudenreichii strain ITG P18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 10248 37 100.0 37 ..................................... ACGCAGATCGCATTCCCCGAAGCCGTGGCTCCCTCAT 10322 37 56.8 26 .................NNNNNNNNNNG.CGCTT... TGGAGTAGCTCGGCGACGTCCTTCTG 10385 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 3 37 85.6 32 ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCG # Left flank : ATATAGGAATGACGGTCAGATGAGCCGACGAGATTCCCATTGCTTTCTGATCGCCTACGACGTGCCCGATGACCGTCGTCGCACCAGGTTGGCCACGGTACTGAAGGGCTACGGGGAGCGTGTGCAGTACAGCGTATTCATGGTTGATTGTCCGCCGTCACACCTGCTGGTGCTACGCCACGATCTCACCGACGCGATGGATATTGATGAGGACTCGGTGGTGATCTGCGACCTGGGCATGTCCACGTCGGCAGACGCCCAACGCATCACCTGGTTGGGCGGTCAGAGGTACCAGAGCGGCGGACGCAGCATCATCATCTGACGACCAGCGGCTCTGCGGCCCGGTTGTCACGCGGAGCCGCTCGCGTGATGTTTCCCCTTGTCACAAGCAGATTGCGCTGAAGGGGTCATCAATCCTCCACGCGCGAGCCATCCTTCTTCAGCACCGCTCGCAGGCGGCCGGTATAATGCCTAGTGGGAGCCCTGTTCCCACGCCCGCC # Right flank : GTTGCTGTGGACAGCATGTGAACCAACCAACCAAATTGCCCCTCCTTCTGGAGGGGCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCAATTGCCGGGCATTGCTCAAGCCGGATCACCATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCTTGGTGCCTCCCGGACCGGATGGAGTCGGACTGCAGATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCAACAACCCTACACCACACACGCTGACAATACAAGCCATTGCCCCTCCTTCTGGAGGGGCCCNNNNNNNNNNACGAATCTGGGGCCGCAGATCACGCCGATTATTATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCTGAAGTGACTAGAAATGTTGATTCAAAGGTTACAGCCCATTGCCCCTCCTTCTGGAGGGGCCCTNNNNNNNNNNACTGCAC # Questionable array : NO Score: 4.43 # Score Detail : 1:0, 2:3, 3:0, 4:0.28, 5:0, 6:0.25, 7:-0.19, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.30,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 2 10592-11469 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCYU01000056.1 Propionibacterium freudenreichii strain ITG P18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ================================================== ================== 10592 26 100.0 46 .......................... TCATTGAGGCTTGGTGCCTCCCGGACCGGATGGAGTCGGACTGCAG 10664 26 100.0 46 .......................... TCATTGAGGCAACAACCCTACACCACACACGCTGACAATACAAGCC 10736 26 96.2 42 .........................N NNNNNNNNNACGAATCTGGGGCCGCAGATCACGCCGATTATT 10804 26 100.0 48 .......................... TCATTGAGGCTGAAGTGACTAGAAATGTTGATTCAAAGGTTACAGCCC 10878 26 100.0 37 .......................... NNNNNNNNNNACTGCACCCTCGACAATGTCGTGAGCG 10941 26 100.0 45 .......................... TCATTGAGGCACACTAAAGTTCTAGGGAGAAACAATGGGCAACGA 11012 26 100.0 50 .......................... TCATTGAGGCGAGGAGGAATGGTCCAGTGTGGCCAAGCTCTCGCTGGCGA 11088 26 100.0 48 .......................... TCATTGAGGCCAAGATGTTGCGGTGGCCTTCGCCTGGATCGCGTGCGA 11162 26 92.3 42 ........................NN NNNNNNNNGAGCAAGTGGAGGAATGCACATGTCACACGGCGC 11230 26 100.0 45 .......................... TCATTGAGGCGACACCCCGTATGCTGTAGCTCAGCACGAGAACGT 11301 26 100.0 46 .......................... TCATTGAGGCAAGGCGCGCGCCGGTGACTGGGCTGTGCTTCTGGGT 11373 26 100.0 45 .......................... TCATTGAGGCACCTTGGCACGCATGAACCGCGCATCAATAAAATG 11444 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ================================================== ================== 13 26 99.1 45 ATTGCCCCTCCTTCTGGAGGGGCCCT # Left flank : GTTGTCACGCGGAGCCGCTCGCGTGATGTTTCCCCTTGTCACAAGCAGATTGCGCTGAAGGGGTCATCAATCCTCCACGCGCGAGCCATCCTTCTTCAGCACCGCTCGCAGGCGGCCGGTATAATGCCTAGTGGGAGCCCTGTTCCCACGCCCGCCATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCGACGCAGATCGCATTCCCCGAAGCCGTGGCTCCCTCATATTGCCCCTCCTTCTGGNNNNNNNNNNGACGCTTGCGTGGAGTAGCTCGGCGACGTCCTTCTGATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCGTTGCTGTGGACAGCATGTGAACCAACCAACCAAATTGCCCCTCCTTCTGGAGGGGCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCAATTGCCGGGCATTGCTCAAGCCGGATCACC # Right flank : TTCATTGAGGCCATCCGCCTCGCGGTGCAGCAATGGCCACCACTGATTGCCCCTCCTTCTGGAGGGGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCGTTTCGCCGGCGACGTGGAAGGGCTTGCCGACATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCATCCGATCCCGGCGACATGGGTCGTGGGGCAGAGGGGATTGCCCCTCCTTCTGGAGGGGCCCTNNNNNNNNNNGCATGGTCGCGACTGGTGTCACCGGTCGCACGGGCCATTGCCCCTCCTTCTGGAGGGGCCCNNNNNNNNNNAGGGCACAGGCCCTGTGCAGGTGTTTCACGCGTCGATTGCCCCTCCTTCTGGAGGGGCAATTCATTGAGGCGCATCCAGCGGTGGAAAGAGCGGTAGTTCCACGGAATTGCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCCCCTCCTTCTGGAGGGGCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.40,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 3 11677-11988 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCYU01000056.1 Propionibacterium freudenreichii strain ITG P18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =============================================== ================== 11677 26 100.0 47 .......................... TCATTGAGGCATCCGATCCCGGCGACATGGGTCGTGGGGCAGAGGGG 11750 26 100.0 46 .......................... NNNNNNNNNNGCATGGTCGCGACTGGTGTCACCGGTCGCACGGGCC 11822 26 96.2 44 .........................N NNNNNNNNNAGGGCACAGGCCCTGTGCAGGTGTTTCACGCGTCG 11892 26 92.3 45 .......................AA. TCATTGAGGCGCATCCAGCGGTGGAAAGAGCGGTAGTTCCACGGA 11963 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== =============================================== ================== 5 26 97.7 46 ATTGCCCCTCCTTCTGGAGGGGCCCT # Left flank : GGAGGGGCCNNNNNNNNNNGAGCAAGTGGAGGAATGCACATGTCACACGGCGCATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCGACACCCCGTATGCTGTAGCTCAGCACGAGAACGTATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCAAGGCGCGCGCCGGTGACTGGGCTGTGCTTCTGGGTATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCACCTTGGCACGCATGAACCGCGCATCAATAAAATGATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCCATCCGCCTCGCGGTGCAGCAATGGCCACCACTGATTGCCCCTCCTTCTGGAGGGGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCGTTTCGCCGGCGACGTGGAAGGGCTTGCCGAC # Right flank : | # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCCCCTCCTTCTGGAGGGGCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.40,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [20.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //