Array 1 168-2643 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTWO01000001.1 Ruminococcus sp. AF21-11 AF21-11.Scaf1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 168 36 100.0 29 .................................... TTTTACAGATATTGACTTTAAGGACTTTG 233 36 100.0 30 .................................... TAATAATCGATTTTTATGTATTAGTTTATT 299 36 100.0 30 .................................... ATGACACGATACGCTTGGAAGATTGCGATG 365 36 100.0 30 .................................... CTAGGTTTGTGCAAATATGAGTGGAAAAAG 431 36 100.0 30 .................................... CTAACAAAATCCAAATATTCAGCATCAGTA 497 36 97.2 30 ...........................G........ AAACTATCACAGGTCAAGGCGGTCAACCTG 563 36 100.0 29 .................................... TTGCAGTATCGACCGATATATCCGCCGTA 628 36 100.0 30 .................................... TTGTTTGTGCGTTTTTGTCCGTGTGTTTAC 694 36 100.0 29 .................................... TATTCGCACTGGCGGTATATGGACTATAC 759 36 100.0 30 .................................... TTCAGCCTGCCTATGCTTGCGCACGGCAAT 825 36 100.0 30 .................................... AAGCACAGTAATAAAGATAGACGGCATAAG 891 36 100.0 30 .................................... TGAGAGATTATGCAAAACAGCAGGAAAATG 957 36 100.0 31 .................................... GCAACACTAGGGGAACTTGCGCTTGCCTCTT 1024 36 100.0 30 .................................... GTAAAATATCATGTATGTATAACTCTTACC 1090 36 100.0 30 .................................... TAGTTGAGTATTATCGCAATCAGTATATAG 1156 36 100.0 30 .................................... GTATCGAAAATTCTGATACCACGTGGAAAT 1222 36 100.0 30 .................................... TTGGCGTTTTCAAGGATAAAGATAAGGAGG 1288 36 100.0 30 .................................... TAATGAGTATGTGGTATATGAGGATAATGG 1354 36 100.0 30 .................................... TGTAACAATGCGTTATGCCTATTTCAACAG 1420 36 100.0 30 .................................... TTATTTACCGACAGAATTTGTGATTGCTAA 1486 36 100.0 30 .................................... CTTTTGTTGATTTCCGTCAGCCGTCCGTAT 1552 36 100.0 30 .................................... CGCACAGTACTGTCAGCCTTTCTTTCAAAA 1618 36 100.0 30 .................................... ACTGACGTTCACAGAGGAAATTCTGGGAAC 1684 36 100.0 30 .................................... GAACAACCTACAGACGTACATAAACTTATT 1750 36 100.0 30 .................................... TCATTCCAAGCTCGTGAAGCCTGTATATCT 1816 36 100.0 30 .................................... GCCGTAAATTCCGTTAAAGTCAACACCCGT 1882 36 100.0 30 .................................... TTTGTTCGCACGCATAGCCTACAGTACGAC 1948 36 100.0 30 .................................... GTTTCTAATTCTACGTCGATTTTCCTAGTG 2014 36 100.0 30 .................................... TTCCCACTTGACAAGAACATATGTTCGTGT 2080 36 100.0 30 .................................... ATCAGCGACCTGTTTTGCCAGTTTGCTGAC 2146 36 100.0 30 .................................... ACGTCAGAAAAGCAGTTTTGCACCTGTCGC 2212 36 100.0 30 .................................... AAGTCGTACTATCTGAACGTCTGCATGGGA 2278 36 100.0 30 .................................... AAATGTCGGTTACGATTGGGTTCGCTAGTT 2344 36 100.0 30 .................................... CGCAAAGCTAGGTGGCAACAAGCTGGACGA 2410 36 100.0 30 .................................... AAATTAATTTCAGGTGTACAGACAGCGAAA 2476 36 100.0 30 .................................... CATGGAAGCCGCCCTTGATAAGTATGGCAA 2542 36 100.0 30 .................................... AAAAAAATCACCATTGTATAACCTTTCTCT 2608 36 97.2 0 ..........................A......... | ========== ====== ====== ====== ==================================== =============================== ================== 38 36 99.9 30 GTTTGAGAGTAGTGTAATTTTATAGGGTAGTAAAAC # Left flank : TCTCTCTTTTCTTTTTTCTTAATTTTGTCCAATATCTATTGTAGCACTACAGACAAGGATATGTGCGTTATCTGAATTTTGTTGACTTTTTATATTTGTATGCTATAATATAATTACTGCCTAATATAAAATGCACTGATGAGTAGTGTCATTATCTTAAATTTGAGG # Right flank : CTTCCAAGACAGGATATTGTTCTTACATCAAAAACTGAAAATAGATTATTTTTTTGTGGATGAAAGATATGAGCAGTGATTTCCGTTGGATGAGTTGGATGAGAATGAATCGTTCTACATTGGAAAGTCGATAGCCGGATTGAAGTAGAATCAGTCGGCACAGAATCCGATTACATATCTGTATCCACTGGAGAAAGATAAAATTCATATTTAATGAAATTGACAAATCGGAATTTGAGAAGGTAAGTGAATGGGATATCACGATACAAGATACCATGGAGGAATATGATAATGTCGAAAGATGAGTATTTGATAACCGATACGCCCTTCAAAGCGTTGACGATTTTTGCAATGCCAATGATTATTGGAAGTTTCTTTCAGCAAATATACAATATGGCCGACTCTGTTATTGTCGGCCAGTTTGTTGGTTCTTCCGCACTTGCAGCTGTTGGTGCATGTGCAGCATTGACCAATGTGTTCATTTGTGTGGCACTGGGAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTAGTGTAATTTTATAGGGTAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 223132-227123 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTWO01000003.1 Ruminococcus sp. AF21-11 AF21-11.Scaf3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 223132 32 100.0 35 ................................ CAGGGTGGTGTTATTGAATATAAGACCCCATCAGA 223199 32 100.0 35 ................................ CAGCGACCATAAGCGAGGTTTTACCTGCTCCGAAT 223266 32 100.0 33 ................................ TAATATAACCGCCTTGCCGTTCTCGTCTTTGAT 223331 32 100.0 33 ................................ CTTCAAGTTTTTAACTGCAAGCATAGGTATCTT 223396 32 100.0 34 ................................ TCATAAAGCTGTCAATATGTACTGTATCGAGTAC 223462 32 100.0 34 ................................ TGCAATCAAGGTTCTTTGAATACAAAGCAGATTG 223528 32 100.0 33 ................................ CAACCGATTTAGTAAATGAACTAAATACAGCAG 223593 32 100.0 33 ................................ ATTTTGAAGCTAATTACAAAAATGCAAAATCAG 223658 32 100.0 34 ................................ CACAACTTAGAAGACAGTATGTGGAAAGTGCATG 223724 32 100.0 34 ................................ AAGGAATTAGCTAAATCCCATGGAATATCTGCAA 223790 32 100.0 33 ................................ ACTCGTTGCTTTAAGGCAATTGATAAGAAAAAT 223855 32 100.0 34 ................................ TCATACGGAAGTGGCTGATAGATTTTTTGATTGT 223921 32 100.0 36 ................................ ATTAACGGAGAGCAGGGCAGTGCAGGAACGAGGAAA 223989 32 100.0 34 ................................ AATCCCTCTGAATGTTATGCGTGACGGCATTATG 224055 32 100.0 33 ................................ TGACGAATACCGCAAGGAATATGATGATTATTT 224120 32 100.0 35 ................................ ATCAGAATCGTCATTTTCCTCATCCTCTGGTTCCT 224187 32 100.0 33 ................................ TAAAATCCTTGAATATATCATCCTCAACTTTAG 224252 32 100.0 34 ................................ AGATAAATCTAATGAATGGGTTAAAACCATGATT 224318 32 100.0 34 ................................ GCTACAATCGAGGAATGGGTAAAGTTTTAAATAC 224384 32 100.0 33 ................................ TGAGTTAAGGTCTGCTGCTGAGATTACCTTCAT 224449 32 100.0 34 ................................ ATGAAGTACAAGGCTGTTTCGGCTGCTGTCAAAG 224515 32 100.0 33 ................................ CTTTAAGGCAAAACAGCGTGTAGTTATCCCACG 224580 32 100.0 33 ................................ CTTTTATACGTTGTAGAATATCCTCATTTGTAA 224645 32 100.0 34 ................................ GCACACCGACCGCCGCCCCCCCCACGCAGCGAGG 224711 32 100.0 33 ................................ CTCATGCTGAATACAGTCGTATTCGGCTATTGT 224776 32 100.0 36 ................................ GACAAATACGTTATTTGTGGCTATAGAATCCCTCAA 224844 32 100.0 34 ................................ TAAGACTTTGAGGAGGTCAATTATTATGAGTAAC 224910 32 100.0 34 ................................ GAAGAAGTCGGACGAGCCGTCAAACACTGATTTA 224976 32 100.0 34 ................................ TCTGATAACGCCGATTGCAACGCCGAGGAGCGAT 225042 32 100.0 33 ................................ TGTGACGTGTGACGAAGTCGGGGGTAATACTAT 225107 32 100.0 34 ................................ CTCAGCCGTTGCTTCTTCTTCCTGTCGGCGTGTT 225173 32 100.0 36 ................................ CATTGCCTGACATTATTAAAACTGTGACCGCTTCAA 225241 32 100.0 33 ................................ TGAACTATGTGCTTTATTTTTTCAAAGGGGGTT 225306 32 100.0 33 ................................ TTTCAAAGCAGACAATGGGCGGAACGTTTTTTC 225371 32 100.0 34 ................................ GATAGGCGAGTGTGCATTTGCACTTTGTGAGAAG 225437 32 100.0 34 ................................ GCTACAACCATATGGAATTTAGGTTACTATGACG 225503 32 100.0 33 ................................ GAAAATCTTTAGCACTATTCAACTAAAAAACGG 225568 32 100.0 33 ................................ AGCAGTTGTTTGAATGATGGTGAAGAGGTTGAG 225633 32 100.0 36 ................................ CAAAGGTATGCCTCGAGCATATGGCAGAACTGGCAG 225701 32 100.0 34 ................................ ACGAACTATTTCAAAAACACTAACTAATCAGATA 225767 32 100.0 37 ................................ TAGAATAATATGGTAGCACATACATACCGACAATGTG 225836 32 100.0 35 ................................ TGAAAATAATTGCAGTTCCTGCGCCCGTTGTATAG 225903 32 100.0 34 ................................ GACCAAATCATCATGGAATGTGTCCGCCTGCATG 225969 32 100.0 34 ................................ TGATTTTCTCTAAAACTGAACCATATTCCCAGCT 226035 32 100.0 34 ................................ ACGTTTCATATTATAATTTGCGTTTACACCTATT 226101 32 100.0 33 ................................ TCACCAATCATTTCATTAGCAATTTCGTTCAGA 226166 32 100.0 34 ................................ TTACTGGTAGCATTGTATCAGGGATATATGTACT 226232 32 100.0 34 ................................ TATTTTGTTAATTATTTTATTCATTGTTTACTCC 226298 32 100.0 35 ................................ TCAATCAAAACAGCAGAAGCGGCAGAGTGGCATAC 226365 32 100.0 35 ................................ TGCCAATATCGACGATATTTGACAGGTCTTCGTTG 226432 32 100.0 35 ................................ AAAACCTTGTGGTGCGCCTGCTATTTGCTCGCCCG 226499 32 100.0 34 ................................ CAAATACAGTAAATTTACTTCGTTTGTAACGTGG 226565 32 100.0 35 ................................ TAGCAAAAACAGCAGAGCAAATAACAATCCACGAT 226632 32 100.0 33 ................................ AAAGAGATTACAGAGCATTTGCAGTCTGCTTGC 226697 32 100.0 34 ................................ GGGTCTATGATGATGCAAAGGTCTTCGATAACGC 226763 32 100.0 35 ................................ AAAATAAAACCATACTTTTAAGGAGGAATTTTAAA 226830 32 100.0 33 ................................ ATAATATATAACATACATTAAACCACTAACTAC 226895 32 100.0 34 ................................ GCTTTTGCTATGTAAAGAATAATGAAATTGTGAA 226961 32 100.0 34 ................................ TTCGAGAAAAAAGATGAAGAGTATAACCTTTTCA 227027 32 100.0 33 ................................ GATATTAGCCACAAAAAGCACTCACCTAATAAA 227092 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 61 32 100.0 34 GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Left flank : GGCGAGCTGGATGAGTACCCGAACTATCTGCTGAAATAGAGGTGATATAAATGATGACCTTAGTAAGCTATGACGTGTCTACCACGGATAATAAGGGCAAAACAAGACTTAGAAAAGTGTCGAAAGAGTGTCAAAATTATGGTCAGCGAGTGCAGAATAGCGTGTTTGAAATAGACGTAGACTATGGCACTTTTCTGAAAGTGAAAGATAAACTTCTGAAAATAATAGACCCAAAGCATGATAGTCTGCGGATATATTACTTAGGCAACAATTGGAAGCATAGAATAGAACACTACGGCACCAAAGAGACCTATGACCCCGAAGGCGTCCTGATATTTTGACCAGCGTACCCCAAGTGATCCACAAATCCCTAGTAAGTTCGCATGAAAATGCCATGCTAATTGTGAACGCACAGTGAACAAAATCAAATCGATACCCATTAAATAAAAAAATAAGTCCGCATCACGTTGAGCAAGCACCAGATATACACAACATCAAGT # Right flank : GTACACCTTTTTGATGATGATAGTAGAGTTTGCGTCACGCTCTGGTTTTGTCAATATCACTTGACACATTTTATTCGAACAAGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 101-917 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTWO01000013.1 Ruminococcus sp. AF21-11 AF21-11.Scaf13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 101 32 100.0 34 ................................ GATACTGGCGTTGGCGTTGATATATACACTGACG 167 32 100.0 35 ................................ AGAAAGATATGGTCGCTATATCAGAAGACCTCTAT 234 32 100.0 33 ................................ AAGTATCAGGAAGAGCTTGAAAAGACCAAGAAG 299 32 100.0 34 ................................ TGATTTGAAGTGCAGTTTAATGCTTAGCGGTATG 365 32 100.0 33 ................................ CAATGAGGGACCTATCGCAGAATTCGACACAGA 430 32 100.0 33 ................................ CGTGGAGGTGCGGCACCAACTACGATTACGCCG 495 32 100.0 33 ................................ TACAAAAAAGTTTTTGACCAAAGCAATGAGATC 560 32 100.0 33 ................................ TCGCATTATGATGTACCAAGCGGAACATCAAAG 625 32 100.0 33 ................................ AACACCAGTAAGACCAGCAGAGATTGTGCCAGT 690 32 100.0 33 ................................ ATTCATTTTAGACATTCTGTACACCGCCTTTAC 755 32 100.0 34 ................................ GTGTGCGAATGCCGTTGGCAGATCATTCCGAGAG 821 32 100.0 34 ................................ TTCAAAAATCGTATAATTATACCCTATTTATCAC 887 31 90.6 0 .........................-.C..T. | ========== ====== ====== ====== ================================ =================================== ================== 13 32 99.3 34 GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Left flank : TTTCCTGTTCCCATTGATGACACACTCCTTTGTTTTTATTATACTTTGATTGTCTTGTATGTGTCAAGTTTTATTATACAGGATTATGCGGAACTGTCGGG # Right flank : TTTCGTTTCAACGCAGGACTTATCAATATTGAATAATACAAATAACCGCTTGACTAAGGTCGGGCGGTATTTTTATACCCAAATACTATACATTTTTCATGTGTTTTCCGTCAAATCCGCCAATTCACACCCCGAAATTTCTGCAAACAAATGATTTATAATTTAATTTGGCAACATTTCTGCAATTGTTGCATTTTTTCTGCAACAAAATACCCACTTTTCATGTATAAGTAGAAGAGGTTTCATCACGAATCGGAAACCTTGCGGAGCGACAGTGTATGAGGAAACATTTTGTCAACGTGAGTTAGGTGAACACGATGAGAGGTTCTGATCGCACAGAAAAGCACTTCCTGCACTCCGTCTGAAGCTTGAAAATTGAATATTTATACCGACACATCTTAGCTATACCCCATGAGCATACTGCTAAATTTAATTGTTATAACCGCCTTTGTTGACATTATTCATATAAAATGGTATACTTAAAATAAAATTTATACATA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 954-64 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTWO01000079.1 Ruminococcus sp. AF21-11 AF21-11.Scaf79, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 953 32 84.4 32 .GATTA.......................... GACTCCTGACGTTTCCGCAAGCTGTTCAGCAC 889 32 100.0 36 ................................ TGAGATAGATTTTTCACGTAAATGTTATGCGGCAAA 821 32 100.0 34 ................................ TTCTTTGTGCTTCTGATACTGCCATTAAATCACC 755 32 100.0 33 ................................ GATAAACAAATTAGGGACATCACCGCAGACGTT 690 32 100.0 34 ................................ GTATATAAGTTTGATTATACTCTTGATCCTTCTG 624 32 100.0 36 ................................ GTCCAAATTGTAAAGGCGAAAACGCACCAGGCGTAG 556 32 100.0 33 ................................ TTACCATAATTTTGTATGGGTTGTTAATATATG 491 32 100.0 34 ................................ TGTGCATACCTTGTCAAACTGGTTGCAGAAGTGC 425 32 100.0 35 ................................ ATCCCACAGATGTATTTTTCAGGCGGTCTGTGCCT 358 32 100.0 33 ................................ CGGCTTCTTCCTTGTAGTCGCCAAATACCGCAC 293 32 100.0 33 ................................ TATCAAACTAGGCAACATTGGCATCAGCTGTCC 228 32 100.0 34 ................................ GAAGATTATGAGGGTATATAAAATATTCGAAAGG 162 32 100.0 35 ................................ TTGACGATTTAATCAAAACATTTTGTTATTTAGGG 95 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 14 32 98.9 34 GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Left flank : TTATTATACTTTGATTGTTTTGTATGTGTCAAGTTTTATTATAC # Right flank : TTAGCTTTTTTAATATAATCCTGTATAATAAAACTTGACACATACAAAACAATCAAAGTATAAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.30,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 1 816-59 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTWO01000084.1 Ruminococcus sp. AF21-11 AF21-11.Scaf84, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 815 32 100.0 33 ................................ CAACATATAATGCTAGCAAATTTCATGCAAAAT 750 32 100.0 33 ................................ TGCTGTTGCCTGCTGTTTCAAATATAGCACATA 685 32 100.0 33 ................................ ACACCGCACAAGTTCCGTCACACGTTCGCAAGT 620 32 100.0 34 ................................ AACTTGGTTTTGTTTATACTCGTTGTTTGCTTTA 554 32 100.0 35 ................................ GATGATTTTGAGCGTTTGAGCAAAATGCTCACAGG 487 32 100.0 35 ................................ AAAGCAGATTGTTACAGTAAATGCCGACCCCGAAA 420 32 100.0 34 ................................ TTTCACAAAAGAGATATATGTGTCACATCAATCA 354 32 100.0 34 ................................ TCGTTTCCTTATAGCTGTACTTACCAAGTGGCAA 288 32 100.0 34 ................................ CGTTCTGATGCAGGACTGGACTGCTACATTATCC 222 32 100.0 35 ................................ CATAAGCATTTTCGCCAAGTCTTTGTCAAATTTGT 155 32 100.0 33 ................................ AGTTTATATCTGGACTTCTGTATGATAGAATTT 90 32 96.9 0 .................T.............. | ========== ====== ====== ====== ================================ =================================== ================== 12 32 99.7 34 GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Left flank : TTGCATAATTCTTGTTCGAATAAAATGTGTCAAGTGATATTGACAAAACCAATACGTTTTGGAGGTTTAACATAGTC # Right flank : TTGATTGCTGGTTTTGTCAATATCACTTGACACATTTTATTCGAACAAGAATTATGCAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.30,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 77-774 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTWO01000086.1 Ruminococcus sp. AF21-11 AF21-11.Scaf86, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 77 32 100.0 35 ................................ CTTTCAGAGTTTAAAAATTTTCCTCGTGACACTAA 144 32 100.0 34 ................................ ATGAATAGTTATCTCTCTCTGGCTTATGACAACA 210 32 100.0 34 ................................ TCATACTGAAACCGCTGTTAAGCATAAGCGTTGC 276 32 100.0 36 ................................ TTTCACTTCCTCGAAAGGTGGAAAATGAAATGTCAT 344 32 96.9 36 ................A............... TTACAAAGAGCTACCCGACAATGCCGTAGCAAGCAA 412 32 100.0 36 ................................ TAGTGTAGTAAAGTGCTAAAGCGGTGAAGCGAGTAC 480 32 100.0 34 ................................ GAAAATGTTGTTGACATGGGCAAGCAGATTTTGG 546 32 100.0 33 ................................ TTTTGTGTCAGCTACACTCGTTTGTTGCCCTAA 611 32 100.0 34 ................................ GCTTGCAATGGTGAAAATCAGCGTAAGCGTGATC 677 32 100.0 34 ................................ ATGTCCTCTATCTGCTCAGTGAGATATGTATACT 743 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 11 32 99.7 35 GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Left flank : TATTATACTTTGATTGTTTTGTATGTGTCAAGTTTTATTATACAGGATTATCTATACTTTCGACAACAAGCTTTTCG # Right flank : TGACAGTGCAAGTGGGATGATAGCCCGTATCTCGTCACGCTCTGGTTTTGTCAATATCACTTGACACATTTTATTCGAACAAGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //