Array 1 3010709-3014647 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065432.1 Acinetobacter baumannii strain ATCC 17961 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 3010709 29 96.6 31 ............................G TAACGCTGGTACTCTGTACGTTCTACGTTAA 3010769 29 100.0 31 ............................. TCAAGAGAAGTTTTATAGTGTTCGTGTATCT 3010829 29 96.6 31 ..........................C.. TTCACTGGATTACGTTCTAAGCCTTCCTGAA 3010889 29 100.0 31 ............................. ATAAGCCTTATGAGGTAGATACTTCAAAAAT 3010949 29 100.0 31 ............................. ACTCGGTCACAAGGCGTAGTCTACGGTTTTT 3011009 29 96.6 31 ............................T CATTGAACATAACGCACCGTTTCTTTTCTTT 3011069 29 96.6 31 ............................T CAATTGGAACGATATCAGGCTAATAACTACG 3011129 29 96.6 31 ............................G GTACAAGCCATCACATGTATCTGCTAGTTCA 3011189 29 100.0 23 ............................. ACACATGCCAGATGGTTCAAATG Deletion [3011241] 3011241 29 96.6 31 ............................G TATCGATACGCCAATGAAGCTATCAGAGTTC 3011301 29 100.0 31 ............................. GTAGGAAGCTCTACATCTAGTTTTAAATAGG 3011361 29 96.6 31 ............................T ATGAGTGAGGGAGTAGCAAATGTCTGAACAA 3011421 29 100.0 31 ............................. AGAAAGCTGAGCAATTGCCTGCTTTGCCTAT 3011481 29 100.0 31 ............................. ATCCCATTAAAGAAATCATTTTGGTCTTGGA 3011541 29 100.0 31 ............................. AGATCAGAGGCACCAAGCAATGCAGACTCCC 3011601 29 96.6 31 ............................T TTACCCTTGCCATGCTTGCCAGAATTAGAAT 3011661 29 96.6 31 ............................T ACCACCCATTGAACGTTAGCCATATGAGCAA 3011721 29 96.6 31 ............................T TCCATGCTTCACATAGAAATTCATTGCAAGT 3011781 29 96.6 31 ............................T ACTGCTTCCCAAGTCAGTAAAATGATTGTTA 3011841 29 100.0 31 ............................. CAGTAGTATCATTTCAATCGAGTAACGTTGA 3011901 29 100.0 31 ............................. AAAAGACCCAAAGAAATTCGCTCGTTTCTTT 3011961 29 96.6 31 ............................T ACACGGCGATCTTGTTTAATAGTCTGAGTTT 3012021 29 96.6 31 ............................C AATACAAACATTTGACTGCACATCTGGAACA 3012081 29 96.6 31 ............................T AGAAAGCTTGGAAAACAAAGGTGACTGTAAT 3012141 29 100.0 31 ............................. GAAACATCTGTTATTTTTATTGATGAGGTAC 3012201 29 100.0 31 ............................. CCCTTTGGATTGAAGACTCTGCTTTTGCTGC 3012261 29 100.0 31 ............................. TTCACCAGCCTCGGCTAGACTTGATGCTCCT 3012321 29 100.0 31 ............................. AGCAAAATTCAAAAGAATTACCCCAGCCAAG 3012381 29 96.6 31 ............................T TGGTGTGCCTGCGCCCACTCAAGCCATGATT 3012441 29 96.6 31 ............................T TTAACCGAGATCAAGAAGTAATTGCTTGGGC 3012501 29 96.6 31 ............................T ACAATACGACGTGATAATGCAACTAAAGCCC 3012561 29 100.0 31 ............................. CGGTAAAATTAAGTTACCTGCTAAACTTGTG 3012621 29 100.0 31 ............................. ATCAAAGCCTTAATCGCTAAATCAACTGCTA 3012681 29 93.1 31 .............C..............T TTTGTTTATACGGTTAATAAATCAGTACAAT 3012741 29 100.0 31 ............................. TTACACAGGCATGGCAATGAAAGTGTTCTTT 3012801 29 96.6 31 ............................C CTCGTGGAAAAACTTAAAAGCCATCTTCGTA 3012861 29 96.6 31 ............................T TCATCTAAATGTTTTTGACGTTCAGCTTCAG 3012921 29 96.6 31 ............................T AGACAGCTCATTTAATCCGGGTGAGAAACAG 3012981 29 96.6 31 ............................T AGATAATGTTGAATGGGTTGAAACTACCTAC 3013041 29 100.0 31 ............................. GTTCAGCATTCCCCTTCGGGGTCAACGTCCA 3013101 29 100.0 31 ............................. TTACCCCTCCTTACTTTCTGCTTTAACTTCT 3013161 29 100.0 31 ............................. AAACACCAAGCCATAAAATTAATTACAGCAA 3013221 29 96.6 31 ............................T GTTTTGCTAATTTATCAATATCGATTTTCAC 3013281 29 93.1 31 ...AC........................ CAGGGGTCAAGTTCAGAAGATTTACGTTACA 3013341 29 82.8 31 ...GC.......CC..............G GTATTAGTGCGAATTGGCTTTTAGCCCACGC 3013401 29 89.7 31 ....C.......G...............T TAAATGCTCAACTATTTCTGTAGCTAATGGA 3013461 28 82.8 31 ...GC....T...-..............T TCAAATGATTTAATGAGCTTGTAGCCATTTT 3013520 29 89.7 31 ...GC.......T................ CGTCTTCTAATGATGGACTTTAATCCAATAT 3013580 29 82.8 30 A..GA.......TC............... TCTCACTGAAGATATGACCATCACTTTCTT 3013639 29 82.8 31 CG..C.......CC............... AGCCATTTACTTTGATAAAGCGTCACATAGC G [3013641] 3013700 29 96.6 31 ............................T AGGAAATTCTATCGGCCCAGCATCTACAAAT 3013760 29 100.0 31 ............................. AGAGACACATCGTTAATAATCTCTTGTGCGG 3013820 29 100.0 31 ............................. TGAGCAAATTATCAATTGATCTATCTGCAAG 3013880 29 89.7 31 ............CC..............T AGACGGTGTTACCTGTAGGCGGTGTCTACTG 3013940 29 89.7 31 ...TC.......C................ TCGTTTGAATAATATGGACAATCCAGCCAAT 3014000 29 86.2 31 ....G.......TC..............G CAGCATCAAACGAGATATTGGCTAACATATT 3014060 29 79.3 31 ...G......A.CC...........C..C AAATAGTTTTAGCTATCTGAGCATTTAATTT 3014120 29 89.7 31 ....G.......C...............T TCATCACGTAGCCTTTTACACGCATCTTGCG 3014180 29 93.1 50 ....................C.......T GTACGCTGAGTATTGATATTGACATTCAGGGCATTCAGAATTTGGCGCTC 3014259 29 89.7 30 ....G........C..............C CAGTTTGCTGAAAATCACCAATACGGTCTT G [3014283] 3014319 29 79.3 31 ...TC......TCC..............G ATTCTATGAGCGTGACCATGACTCTATTTAA 3014379 29 89.7 31 ...GC.......C................ TTATCCAGATAAAACCATATCTACAAAGTGG 3014439 29 93.1 31 ....G.......................G ATCATCTACAGTGATTGAATAAACGGTTTTT 3014499 29 82.8 31 ...GC......TG...............C AACGACGACGCCGTGTGTTTGTTATCGGAAG 3014559 29 79.3 31 ...GC....T..TC..............C AAGTAGGATTTGCAGCCCCAATAGTCTTTAT 3014619 29 75.9 0 ....G....T...C.A........AT..T | ========== ====== ====== ====== ============================= ================================================== ================== 66 29 94.5 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCAAGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGAATGGGAATTAGTTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCGGACCTAGTTAAAGATGCTTTTGTTATGCCAGTCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAATACCTTATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTTGAATCTTAAAAAGAAAAAACCCCGAAACTTACGTTTCAGGGCTTTTTCGAATCTTGGTGGGATGGCGTCAATTGAACTGATAAAACAAATAATTGTTTTTTAAAGTTAATTTCAATTCAAAAAATAACAGTGTACACAATAGTGTACAAATTATTTGTTACTAGGGCATTTCTCTGAGTTTAGTTGTCATGCTGGGTGACGAACTCAGGAGTTAAAAACACTCCTTTTAGTGGATCGGATTATGAGGCTCGTTATTTGGCTTCAATAAATTTATTGAGCGCAAAACCATATTTGGTGATTGGATTTTAAATCTTGAATTAACTTAGCCGTTCAAGTGGCTGATTAAGTAGCTTGGTCGCGTTTTAAGTGTGAGCAAGTTATAAAAATCACGAAATACTTTCGATTGCAGATACGTGCATCCAGTCGCGTGTACATTGCCGAAGTTGAGGATTTAGATGGTGGGGGGTATCCCTATGTTCAGGTTATTTGCAGAAGTA # Questionable array : NO Score: 5.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-69] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //