Array 1 42507-47531 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNRP010000002.1 Schaalia sp. lx-100 L-100_ctg02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================= ================== 42507 29 96.6 32 ............................G AGGTATCCCACTAACAGCAAGAGCCCTATCGA 42568 29 96.6 32 ............................C TATTTTAAGACGCTTGTGTGTGTGGGAACGGC 42629 29 96.6 32 ............................G TCCCCGGCAAGGGGCATTTCTTTGCTGAGCCT 42690 29 96.6 32 ............................C ATCAACGCGTGTTCAAAATTTTATGGTTTCTC 42751 29 96.6 32 ............................C TATCATCGTCTCCTTCAGGTGGTGTGGGTGAG 42812 29 96.6 32 ............................C AGCGCGGCCACATCATCAAAACCGAGCACGGC 42873 29 96.6 32 ............................G GTTTCTGCGCTTGTGCGCGTGCGGTGAGCCGT 42934 29 100.0 32 ............................. ACTCATCTGGCTTCACTGGCTACCCAAAGCAC 42995 29 96.6 32 ............................G ACGCTTGTGTGTGGGAACGGCCAGTCTGTTGC 43056 29 96.6 32 ............................G GCGACACGGTAAGCGTTACCGGCACACTCAAA 43117 29 96.6 32 ............................C CTCGATGTTCATGATGACCTTGTGCTCGCGAT 43178 29 96.6 32 ............................C TAACACGACGAGGAACCGCAAGGCGAGGCTTG 43239 29 100.0 32 ............................. TCCGGGCTTGGTGATGGCGCGGGCCGCGTCTT 43300 29 100.0 32 ............................. TTCCGCAAGATCGTACCCTTGCGTGTTGTGGG 43361 29 96.6 32 ............................G GACGTTCAAAAAGACATTACCGGGTGGAACAT 43422 29 100.0 32 ............................. TCAACGTGACTTTCTGGCTCCTGCCAAAGCCG 43483 29 96.6 32 ............................G CGCTGGCATCCTCAAACATGCTGCCCCCCTCG 43544 29 100.0 32 ............................. ACGGCTTTTTCTCGACGCTTGTCAATCAGCTT 43605 29 100.0 32 ............................. ACTGCACATACACGCTCACCATGCACAGGCCA 43666 29 96.6 32 ............................C ACTACGCGCTGTTCCTGTTCGCTAAAGGCGCG 43727 29 100.0 32 ............................. CATCAACCACTACAACACGCACCAAGTGCGCT 43788 29 100.0 32 ............................. CTCGTCGAACCCGTGGGTACAAAACTTCATCA 43849 29 96.6 32 ............................C AGGTAGAAAATTACAGCGCTTTTGGGTCTACG 43910 29 100.0 32 ............................. TGTTTTTGAAGCCTTTTGAGCTCAAGGTTTTG 43971 29 100.0 32 ............................. GAGCGCCTCCATGCGAGCAAGGCTCGTCGTGG 44032 29 96.6 32 ............................A ATATCCAAAAGATTCACAGATGCGCACCTACC 44093 29 100.0 32 ............................. GGAATGTGAACTTGCTAACGTGATACAGTGCA 44154 29 96.6 32 ............................G CGCGGCCCTGCGATCCTCACCGTTACCGTATT 44215 29 96.6 32 ............................C GCGCGTCACTCGCCTGCTCATACTCTCCTAGA 44276 29 100.0 32 ............................. GACCGGGCCGATCTTCCCGAAAACATTAGCGA 44337 29 96.6 26 ............................G CTGAACGACACAAAAAAAGGGGGGGG 44392 29 96.6 32 ............................C TGCCTACCGAGGTAGCAACCGAAATCGTCAAA 44453 29 100.0 32 ............................. GTTATGACCGTATAGAAAAAGCCGGGATTAAT 44514 29 96.6 32 ............................G GGTCTAAAAAAGCTTTGCGGTGTCATAGATGA 44575 29 96.6 32 ............................C GTGTTATGCGCGATAGTGACACTCGGGTTCGC 44636 29 100.0 32 ............................. TCCTTGGCTGATGACCTCAGTTGCGACCTTGA 44697 29 96.6 32 ............................G TGGGGCAAGGACTTTCTCGCCGCCACCTTTTT 44758 29 96.6 32 ............................G AGCACGGATGAGGCGGCTGGCGATGAGTGAAA 44819 29 100.0 32 ............................. ACTCCGTTCAGGGGAAGATAGCCTACGCCCTA 44880 29 96.6 32 ............................C GTTGGACATGCTATCGCAAACCTTGACGAAGA 44941 29 96.6 32 ............................C TCACAGGAAACACCCGTCGAAAAAAGAAGAAA 45002 29 96.6 32 ............................G AAAACGTTTTGGCTAGGGGTTTTTGAGCGCGC 45063 29 96.6 32 ............................C CGTTATAAGGCGCTTTCGCAGGCCGCGTTTCG 45124 29 100.0 32 ............................. GATGCAACACAATCCGCGCAACACCATAAGGC 45185 29 100.0 32 ............................. TTCCGTCCAGCAGTTTCGCGTGTCATTCCCGT 45246 29 96.6 32 ............................C GGTCCGCGTCCTTTTCTCGGTCGGCCTCTAGT 45307 29 96.6 32 ............................G CGATGGCATCGGCTGAACGTCGCTTAACGCGC 45368 29 100.0 32 ............................. GCTCTCGCTCTTAACGGTTTCGTGAAACCAAT 45429 29 96.6 32 ............................C ATGGAACACGCCCGGCCTGTACCTCAAATGCC 45490 29 100.0 32 ............................. CGCTAGAAAAACCGGCATATCACAGAGTCGTA 45551 29 96.6 32 ............................C AGCTCTCCCGTGAAACCGGAATTGAGTACGTC 45612 29 100.0 32 ............................. ACTCCACCCCGTCGTACGTTGACGAAGTATGG 45673 29 96.6 32 ............................G AGCTACCGCAGTACTCATGTTTTGCACTTCTT 45734 29 100.0 32 ............................. AGGTCGTCACAACCCAACGACCTCGGGTAAAC 45795 29 96.6 32 ............................C ATCTACCGATGCTGCAACCACCTTTCGACCGA 45856 29 96.6 32 ............................G TGCGGCGCGCAGGGCAGTGACCTCGTTGGTGA 45917 29 100.0 32 ............................. ACGTGTCGTTGCGCGATATCCGCTGATATGTG 45978 29 96.6 32 ............................G ATTAGCCATATGGCTACAGTAAGCGGTGTTTT 46039 29 96.6 32 ............................G GGGATTCTGATAGTATGGGTCATAAGAAAAAT 46100 29 96.6 32 ............................G TTTCATTGATCGACGCGTGTGCTACCTGTGCG 46161 29 96.6 32 ............................G CTGCCGGTCGTATGCGAACGCTACCACAGTCG 46222 29 100.0 32 ............................. GTTTTTCCCATTCATGCCATAGGTCTATATCA 46283 29 100.0 32 ............................. GAGCGCTTCCATGCGAGCAAGGCTCGTCGTGG 46344 29 100.0 32 ............................. TCCTTTAATGAAATTCAGGCCGGTTTCGACAA 46405 29 96.6 32 ............................G CAGCCAAACGCCACCGCATGAAACACGCCCTC 46466 29 100.0 32 ............................. GGCTTTATCCCACGCGACCCGCGCACGCAGTT 46527 29 96.6 32 ............................G TGGCTGCTGAAGATTTGGGGCTAATATGCGTG 46588 29 96.6 32 ............................G TCGCTGAAAAGCAACTACGACAAGGCGGTTGA 46649 29 96.6 32 ............................G AATCCGGTCACCTTATCCCAGATAGCTTTAAG 46710 29 100.0 32 ............................. TCGTACGCTCTTTCGCGGCTTCCCACATACCC 46771 29 96.6 32 ............................C TCGCACGGGCGATCACAAGGCAGCGCACAGGA 46832 29 96.6 32 ............................C CACTGGTACACATCGATCAGTGTTTTCCCACC 46893 29 100.0 32 ............................. GCGTCACACATACGCGCGATAAATTCAGGACT 46954 29 100.0 32 ............................. ACAAGACCCTCAGTGAGGGGAATACCTGCTGG 47015 29 96.6 32 ............................G AGTCACACCGATAGCGTCGATCACGTTTTGCG 47076 29 96.6 93 ............................C TCGTACACGTCGAATGGGGGCACGACCCAAGCGCGGCCTGCGCATACAAGCCGTCCTGACCTCGTACACGTCGAATGGGGGCACGACGGTTGT 47198 29 96.6 32 ............................G AAACGCGCGCCTGTTGCTTCCACGCGCAAACG 47259 29 96.6 32 ............................G GACGTGGCCGTTTTTGTCGGTGATGGTACGAA 47320 29 100.0 32 ............................. TTGGGGCACGCAGCGCGACGGCACCACTGTGC 47381 29 93.1 32 ..........T.................G AATTGGGAATCGTCCAAGCTCAGATAAAAAGC 47442 29 96.6 32 ............................C AAAGCCGTGGGCGAGACGGCTTTCCAGTATCT 47503 29 96.6 0 ................T............ | ========== ====== ====== ====== ============================= ============================================================================================= ================== 82 29 97.8 33 GTGTTCCCCGCGTAAGCGGGGATGAGCCT # Left flank : ATTATGCGGAAGAAGTAGTGCTCACATGATTACTTTAGTGGTGACAGCGTGTCCAGCTGGATTGCGTGGAGATTTAACGAAATGGCTTCTAGAAATTAGTCCAGGAGTATTCGTAGGAAATGTAAGCGCACGTGTACGTGATTCCTTATGGGAAAGAACCGTAGGACTTTGTAAAGACGGTAGGGCGTTAATGATATTCAATGCGCCGAATGAGCAAGGCTATGACTACCGTGTGCACCTGCATTCATGGGAACCAGTTGATATGGATGGATTGACTTTGATGAAGCGTCCAAATGCGCGTGAAGATTATCAGCGTGCACGTACTGGTTGGAGCAAAGCTAGGGCATATAGGCGAGCTATACGCCGTTGAAATACTGGTGAATCTAAAAATTTAGAATAAGGTGCGAAGGTAACTTTGCAATTAGCGCAGAGAAATGAAAGTCGCACGAAAATAGTATTTTTTGTTGAATAAAAGATGATAAAATAAGGACTTCTTAAGA # Right flank : TCTCTGCGTGAGCAGAACACGCCGCGCCAGCAAACCCCGCACACAGGCCCTACCAGTGAGGACACCAGCAGTAAGACAAGTCGCACTCCTGCTACGCCGCAAAGCGCGGATAAGCTAGACAGGATCAAGAGCCTGTACGCTACCTTGGAAATAGCCCTCACGCCAGGCACGGGCGAGGATGCGCCGAACATTGCGCAGCCGCCAATCAGCCTCCTACCCGGCCAAGGCCCCAGACGCGGACCCACACTATAAAGACACAGGCAGAAAGGAAAAGCACGCATGGGACAAGAATCTTGTTCAAAAGAAACGCCGCGTATTTTTTTTGCAGATACTATTCCACTGGCTGTGCCACAGCGCCTAGAGGACTTACGCGGACCTGAAAACGGGTGGCTTGATCTGCCGATCACCGTGTTTTGGGCACCTAACCGTCACTTTCCAATTAACAGTGATTCACAGCGCATAGAAGCATACAAAAATATTCTTGAACGCGGCACAAGACA # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.05, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTAAGCGGGGATGAGCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //