Array 1 1-1128 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCDI010000002.1 Micromonospora tarapacensis strain Llam7 contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 1 30 96.7 31 .............................T CGTCGTCCTCGTCGGACTCCAGCACCACGGT 62 30 96.7 31 .............................T TCCGTTCTGGGCGACGAACTGACCACCACCC G [84] 124 30 100.0 31 .............................. AGAGAGCTATGACGCCGGACCAGCACCGGGA 185 30 96.7 31 .............................T CGTCGTCCTCGTCGGACTCCAGCACCACGGT 246 30 96.7 31 .............................T CGTAGCCGCCCACCCACGTCGTGGCGTCGAC 307 30 100.0 31 .............................. GCTTCCCGCAGGTGGCGCAGGGCTTGATGCG 368 30 100.0 31 .............................. TGGTGGCGGACACGCCGCCTCGGGTGGTGCG 429 30 93.3 31 ............................TT CACGCAGCCGTTCGCGCACCACGGAGTGGAA 490 30 93.3 31 ............................CA GGTGGGACAGCTGCACGACGGCCGCCCAGGT 551 30 96.7 31 .............................C GGTCGTGTGGGAGGAGCCGCCGCCCGCCCAC 612 30 96.7 31 .............................T GACGATGCGGGCGGCCGGGCGGCCTCGTCGC 673 30 96.7 31 .............................A TCGGCGCCAACGGCCGGACCACACGAGGCGG 734 30 96.7 31 .............................A CGTGCAAGCACTTCGTTGTCGACTTCCCCGA 795 30 96.7 31 ..............G............... CCGATGCGGCGATCAAGCTGTACACGGCGCC 856 30 93.3 31 ............................TT GGTGGGGGCTCGGTTCAGATACCAGCCCATC 917 30 100.0 31 .............................. CGGTCGGCTTCGGGAAGGTCTACGGAGGTGG 978 30 100.0 31 .............................. TCTACGAGCAGGGACGCGCGCAACTCTCGAA 1039 29 86.7 31 .........G..T....-...........C CTGGCGCGCTGCCGGCCAGCGAGCCCGCCGC 1099 30 76.7 0 .....................CCT.CGTC. | ========== ====== ====== ====== ============================== =============================== ================== 19 30 95.5 31 GTCCTCCCCACGCACGTGGGGGTGCTCCGG # Left flank : | # Right flank : ACGTGTTCCAGCTGCAGTCCCCAGATCTCGTCCTCCCCACGCACGTGG # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.38, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGCTCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCACGTGGGGGTGCTCCGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 751801-749944 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCDI010000004.1 Micromonospora tarapacensis strain Llam7 scaffold_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 751800 30 100.0 31 .............................. GAGCGCAGCGCAGACATGAGCGAGAGCGGGA 751739 30 100.0 31 .............................. CGCGGTGTATGTCGGCCGGCCCACCAAGTGG 751678 30 96.7 31 .............................C AGTACTCCGGGTCGTTCGCGCAGGTGCTGCC 751617 30 100.0 31 .............................. CTGTCATCGCCGGAGGACTCGGAGGGGCCGG 751556 30 96.7 31 .............................A ATGTCGCGGAGGGTGGTGTGGGGACTACTCT 751495 30 96.7 31 .............................C TGCCGCCCACTACGACGCCGGGCCGCGTGGT 751434 30 96.7 31 .............................C CTCGGCGGGGTCAGTGTGGTCGGCGTACTGC 751373 30 96.7 31 .............................A TTCACTGCCAGAGCAAGACCGAGTCCGGCGA 751312 30 96.7 31 .............................T CGGTCTCGAACGTCTGGAGGTTGACGCCGCC 751251 30 93.3 31 ............................AA GCACCGGCTCGCCGAGTTGCTGCTGGTCAAC 751190 30 96.7 31 .............................T CGTCGTCCTCGTCGGACTCCAGCACCACGGT 751129 30 96.7 31 .............................T CGTCGTCCTCGTCGGACTCCAGCACCACGGT 751068 30 96.7 31 .............................T TCCGTTCTGGGCGACGAACTGACCACCACCC 751007 30 100.0 31 .............................. AGAGAGCTATGACGCCGGACCAGCACCGGGA 750946 30 100.0 31 .............................. TGTCGGCGTTGAACACGCTGCCGACGTTCGG 750885 30 96.7 31 .............................T CGTAGCCGCCCACCCACGTCGTGGCGTCGAC 750824 30 100.0 31 .............................. GCTTCCCGCAGGTGGCGCAGGGCTTGATGCG 750763 30 100.0 31 .............................. TGGTGGCGGACACGCCGCCTCGGGTGGTGCG 750702 30 93.3 31 ............................TT CACGCAGCCGTTCGCGCACCACGGAGTGGAA 750641 30 93.3 31 ............................CA GGTGGGACAGCTGCACGACGGCCGCCCAGGT 750580 30 96.7 31 .............................C GGTCGTGTGGGAGGAGCCGCCGCCCGCCCAC 750519 30 96.7 31 .............................T GACGATGCGGGCGGCCGGGCGGCCTCGTCGC 750458 30 96.7 31 .............................A TCGGCGCCAACGGCCGGACCACACGAGGCGG 750397 30 96.7 31 .............................A CGTGCAAGCACTTCGTTGTCGACTTCCCCGA 750336 30 96.7 31 ..............G............... CCGATGCGGCGATCAAGCTGTACACGGCGCC 750275 30 93.3 31 ............................TT GGTGGGGGCTCGGTTCAGATACCAGCCCATC 750214 30 100.0 31 .............................. CGGTCGGCTTCGGGAAGGTCTACGGAGGTGG 750153 30 100.0 31 .............................. TCTACGAGCAGGGACGCGCGCAACTCTCGAA 750092 29 86.7 31 .........G..T........-.......C CTGGCGCGCTGCCGGCCAGCGAGCCCGCCGC 750032 28 86.7 31 .....................C--.....T CGACGTGTTCCAGCTGCAGTCCCCAGATCTC 749973 30 96.7 0 .........................C.... | ========== ====== ====== ====== ============================== =============================== ================== 31 30 96.6 31 GTCCTCCCCACGCACGTGGGGGTGCTCCGG # Left flank : AGCACCAAGAAGATCCGGCAGGGCCAGCTGACCAGCGGTGTCATGCCGTAACGAGCCGTCACCGACACAGCCCTCATACGAACCATCACGGCGCAGACCAGCGAACGCACGCTCGTTTTGCTGCTGGAAGCCCGGCGTCGCCTTACCCACGTCGTGCAACCCAGCCCAGAACATGACCAATGACCTGGCGTGGCCCGCATCGGTGGCCAGCCCTTCGACAACGATCCTGCGCTGGTTCGGAGCAAGGTAACGATCCCACAGCACACCAGCCACAGCAGCGGTGTCGATCAGATGCCAGAGCAGCGGGTACGGCGTCGAAAGACCCTTAGACTTGCCCCAAATCCTGGAATCGACCCTTTCCTGATCGGCGCCCACCGCGATGCCCTCCAACCACACCCACGCTCACAACGGCAGCCGCATGCAACCACAGCCGTATGACACTCTCGGCCGACTGACGAAAAACCGCACCGAGCCCCGGTAAAACCGCAGGTCGCGAAGTG # Right flank : CCGCGCTGGCTAGTACTGCTACGGCGGTTCGTTACTTTGGGGCGCTTCGAGTCGTTTGTGGTAGTGGCTGGCTTTCGCCTGAGCTTGCCGGTAGCGGCGCCAGTCCGACCAGTGCAGCACGTGGTCGGCGGCGGTGCATCCTTTAGGACGAGTTTCGTGAAGAGGCGGCGGATCTCGTTGCTGCTCAGTGGGATGAGCGTGTCTGCGCCGGGATCGGCACCCCCTTCTCGGCTTGTGTGGCGCGGGTGGCGGCCAGGAAGGCGGCGGTCATGGCCAGAGTGATGTGGGCGTACCAGGCGTCATAGCTGCGGACCTGGTACTGGTCGAGACCGACCTCGTTCTTGGCGGTCTGGAAAGGACTCTTCGATCGCCCACCGGGACCCGGCGACGCAGACCAGTTCCCGCAGCCGGGTGCCGCGCGGGCCGAAACACACGTAGTAGGCGATGTCGGTGGGATCGCTGATGCTGCGCCGCGCGAGGACCCCGCCGCGGCGGCCGTG # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.39, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGCTCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCACGTGGGGGTGCTCCGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2183930-2188171 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCDI010000004.1 Micromonospora tarapacensis strain Llam7 scaffold_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 2183930 29 100.0 31 ............................. GGCACACCCTTCGGATCCGGTGTCGTCAACG 2183990 29 100.0 32 ............................. TGAGGAGGTTCCCATGCTGCCGACGCTCGGCT 2184051 29 100.0 32 ............................. GTCATCGCCGGGCCCTGGTCGTCGGCGGCGAA 2184112 29 96.6 32 ............................G GGCTCCGGCGCGGGCGAGATCGGCAAGGTGCT 2184173 29 100.0 32 ............................. CCGGGCCTGCTGACGGCGAACGCCAGAGCGAT 2184234 29 96.6 32 ............................G AACCGGCTGACCGCCTCACCGATCTGCGGCAG 2184295 29 100.0 32 ............................. CGGCTGGCGGGCACCGCGCAGGCAACCTGGGA 2184356 29 96.6 32 ............................G CCGACCCCGCCCGCCGCGCCCAGGCCGGCGCC 2184417 29 100.0 32 ............................. TCACCGTTGCCGAGCGGCTCCGCGTGCTCCAC 2184478 29 100.0 32 ............................. AATCCGACCAGCGCGACGTGGTTCTATGGCCC 2184539 29 100.0 32 ............................. TCGCGGGCGGCACCCAGGTCCGGCGTGAGGAT 2184600 29 100.0 32 ............................. GCGATCGGGTAGAACCGTCCGCCGGGGTCAGT 2184661 29 100.0 32 ............................. GGCGCGCAGCTCGGTAGCACAGCAGCAGTGGA 2184722 29 96.6 32 ............................T GTCGACCAACGCCGGCGCGGCGGCCCGCGGCA 2184783 29 100.0 32 ............................. AGCCACCGGGCCTTGCGCCAGTACGCGGCCTT 2184844 29 96.6 32 ............................T GCGTCGCGCGACGACGGCCGGCGACGGGGTGG 2184905 29 100.0 32 ............................. AAGAGAGGGCGGCAGTGACCGAGCAGCAGATG 2184966 29 96.6 32 ............................G TCGGGCCCTCAGCGGGCGGGTGCGCATCTGGC 2185027 29 96.6 32 ............................G TCCACCACCCGACACACCACCCGTGACCAGCA 2185088 29 100.0 32 ............................. AGGACTGGCGACGCACCACCGCCGCCGTGCAG 2185149 29 100.0 32 ............................. ATCCCGTCGGTGTGCTCGGACAGGCCCGGCAC 2185210 29 100.0 32 ............................. ACGAAGCAGGTCACCGGCGGGCGCGCTTGTCG 2185271 29 96.6 32 ............................G AAACTGGTGGAGGCATACGAACACCGGATCAC 2185332 29 100.0 32 ............................. CTGTCGGAGGCAGAACCGCGGGCGCTGCAGAT 2185393 29 100.0 32 ............................. GGGCTGCTGCGGGACATGCAGATGGTCCACCT 2185454 29 100.0 32 ............................. TGGCGCGGGTCCGCACGGCGCTGCAGGAGGCT 2185515 29 100.0 32 ............................. GTGGCGAGCAGGGTGCCGGTGGCGGCGTCGCC 2185576 29 96.6 32 ............................G GGTTAGGCATCGTCGTTGTCTCCCATCAGTGC 2185637 29 100.0 32 ............................. GTCTCGACGCGGGCGTGGAACTGGGCGATGAA 2185698 29 100.0 32 ............................. CTCTGTCGTCGTACGAACGGCCGGAGAGCCAG 2185759 29 100.0 32 ............................. TCCTCCGGTTTGCTCGACCGGCTCGACGAGAT 2185820 29 100.0 32 ............................. AGCAAAGGCCGGCTGATGACGCCCGGCGAGGT 2185881 29 96.6 33 ............................A GTCCGCCGCCGAGCGTGCGGCCAAGTCGGCGGC 2185943 29 96.6 32 ............................G GATGTGCGGCATGAGCGAGCAATGCGCCTTGT 2186004 29 100.0 32 ............................. GCGATCTCGTGCGACCAGTCGGGCTGGTCTGC 2186065 29 100.0 32 ............................. GTGCCCACGGTCGACGTGCCGGTGTGGACCGA 2186126 29 100.0 32 ............................. CATCCGTCGTCGTGAGGAGAAGACATGGAGAT 2186187 29 96.6 32 ............................G GCAATCGGACAAACCGGGGCAGCCGATCCCGC 2186248 29 96.6 32 ............................G CAGTGCGGCGGCCACCTCCAGCCCGGCGAACC 2186309 29 96.6 32 ............................T CCGGACATACCGGGGCACGGAATACGGACGGT 2186370 29 96.6 32 ............................G CGGATCAGCTTGTCGGCCGGCGTCGCCACGCC 2186431 29 96.6 32 ............................G ACTTCACCGAGGCGGAGATTGTGGTGTCGGAT 2186492 29 100.0 32 ............................. CGGCCGTCGACGCCGACACTGCGGCGGCCGTC 2186553 29 100.0 33 ............................. CATGCGGCTGGAATCCGACCCGATCCGCTGGCT 2186615 29 100.0 32 ............................. AGGTCCCGCCGCTCGACAGCCAGCGGGTGGTT 2186676 29 100.0 32 ............................. CTAGAGCGCAGTGTATGCAGAGTCAACAGTGC 2186737 29 96.6 32 ............................T CTCCGACACCCGGGTCAAGTTCGCCCTGCGGA 2186798 29 100.0 32 ............................. GGGTAGATGCGGATCATCGTCGGTGTCCTCGT 2186859 29 100.0 32 ............................. GCCTTCGCCGAGGTGTATTCGATCGCGGAGAT 2186920 29 96.6 32 ............................G GACACCGAGCGAGAGATCGCACAGGAACAGAT 2186981 29 100.0 34 ............................. GTTGTTTTTTGCCTGATCCTGTTGGGCCGGAGAT 2187044 29 100.0 32 ............................. GAAGCCGCCTGGGAAGACGCCCGCTCCCAACG 2187105 29 100.0 32 ............................. GGGAAGGTCAGCTTCCAGCAGCTGATCGCCGA 2187166 29 100.0 32 ............................. GGCGCCGCGGGGGTGCCGTCGATCTCCGTGAA 2187227 29 100.0 32 ............................. TACCAGGACCAGCCGACCAGGGAGAGCGCCGA 2187288 29 100.0 32 ............................. GGGGTGGGCACCTACGACCTGCCGGTCACCGT 2187349 29 100.0 32 ............................. TCGCGCGCCACCGAGGTAGATGGCACGGTCTT 2187410 29 100.0 33 ............................. CGTCCGCCGGGGTCAGTGGTCCGCGGGGTGCTG 2187472 29 100.0 32 ............................. GTGTCGTCCTCGTCGGACTCCAGCACCGCCGT 2187533 29 100.0 33 ............................. CTGTCTAGTGGGTATATCAAGCGGGTTGGTCCT 2187595 29 100.0 32 ............................. ACCATGGACACGGACAGCGGGCCGTCGAGCGG 2187656 29 96.6 32 ............................T CCCACGGTGCCACAGTCCCGTATGGCCACACC 2187717 29 96.6 32 ............................G GCGGCCTTCGGTGGCTGCGGGTTGTCGCGCTT 2187778 29 96.6 32 ............................G ATTCCGTTCGAGATCCTCGGCCTGGTCCTGGC 2187839 29 96.6 32 ............................G TGGTCGGGATCGACCCTGCCCACGTCGGGCCT 2187900 29 96.6 32 ............................G GTGCCAGCGGTGCCCAGGTCGTCGCGGATCAG 2187961 29 96.6 32 ............................T GGGAATGGGAGTGTGATTGTCCAAAATCCTGT 2188022 29 96.6 31 ............................G TTCCTTCCCCCCTACCCCCCAGGAGGAGCCT 2188082 29 100.0 32 ............................. GAGACGGTGACCCGATGGTGATCGTGATCCTG 2188143 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================== ================== 70 29 98.7 32 CTGCTCCCCGCGCACGCGGGGATGATCCC # Left flank : GCAGCCGGTCTCCTCGGCAACCTCCCGGATCACCGCATCGAACGGATCCTCCGCGTGCTCCACCCTGCCGCCCGGAAGGCTCCAGTTGGTCCCGCCGGCCGGCGACACGCAACGGACAAGCAGCACCCGCTCATCCTCGAAGCACACGGCGTACGCGGCCAACCGGAAACTCAACCCAGCACCTCCCGACCGACGTCGACGTCCCGACGGTGACCTCTCGCGGACTGCGAGCCGCCCCATCATGAGATGGTCACCGCCGCCAGCCGCTCCATCCAATCACCAAGGGTTTGTCGCAGGTCGACACGTCCATCATGGGCGGAGAGTCGGCCGCCCGGCCGAGAGCCCCTTTCGACCATCGCCATCCGCTACGCTGAACCTCACGTTTCGCCACTCGCACACACCCAACTCCCGACCCCAAGCGGCAAAGGAGCCTGGCGATCTTGAGACGCAAAGTGAAGAAAAACAGCGGACTTGATCTTTAACACCCCAGGTCAGAAAGC # Right flank : GGATGCTGCTGTGTTTTCACCGGGTGTTTTTGGCCCCACCGTTCCGGAAAGTCCCGGGTCCACCGTCCGCGACAGGTGCCCATGCGTCGATGGGAGTTCCAGTTCCAGTTGGCCCCACCGGTCCCAAGGGATGGAACAGCCGTACTTCGGCCGGCGGAGCCCGACGTACTCGCAGCCAAGCCGCCGACCCCAGGACACTGCGCTCCCACCAGCGACGTCTTGCTGCAGGGATTCGGTGGCAAGCCGGTCGAAGACCGGCGCGGCAGCTGTTCGGCGCCGAGCGGCGTGAACCGGTGGAGCCACGCTGACACCACCGGGCATCGGCGTCCATGTGGAGCCACAGATTTCTGGAATCGAATTGATGGGGCCAGGAATCGATGGACCTGTGGGGCCCGAATGAGTCGGCGAGAACACTGCTGCGTTCTACGCCCCGTCCGCTCTCTGCTCCCCGCGCACGCGGGGATGATCCCCAACCGCCGTGCAGTCGGAGGGCAACCGGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2188612-2188775 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCDI010000004.1 Micromonospora tarapacensis strain Llam7 scaffold_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2188612 29 100.0 32 ............................. CAACCGCCGTGCAGTCGGAGGGCAACCGGATC 2188673 17 58.6 0 .................------------ - Deletion [2188685] 2188686 29 89.7 28 AC......................G.... ACAGCCACCCGGCCAACTGGGTCAGCTC 2188747 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 87.1 20 CTGCTCCCCGCGCACGCGGGGATGATCCC # Left flank : AGACGGTGACCCGATGGTGATCGTGATCCTGCTGCTCCCCGCGCACGCGGGGATGATCCGGATGCTGCTGTGTTTTCACCGGGTGTTTTTGGCCCCACCGTTCCGGAAAGTCCCGGGTCCACCGTCCGCGACAGGTGCCCATGCGTCGATGGGAGTTCCAGTTCCAGTTGGCCCCACCGGTCCCAAGGGATGGAACAGCCGTACTTCGGCCGGCGGAGCCCGACGTACTCGCAGCCAAGCCGCCGACCCCAGGACACTGCGCTCCCACCAGCGACGTCTTGCTGCAGGGATTCGGTGGCAAGCCGGTCGAAGACCGGCGCGGCAGCTGTTCGGCGCCGAGCGGCGTGAACCGGTGGAGCCACGCTGACACCACCGGGCATCGGCGTCCATGTGGAGCCACAGATTTCTGGAATCGAATTGATGGGGCCAGGAATCGATGGACCTGTGGGGCCCGAATGAGTCGGCGAGAACACTGCTGCGTTCTACGCCCCGTCCGCTCT # Right flank : CAACGCCCGCCGGTCGATCGCCTCACCGCACCTGCGCCGCGACAACCCCGAGCCCGAGCATGCCGGCTCGCTGGTGCTGGAAGCACTCAGACTCACCGCCGAGCAGCGCTACGAGTCGGTCCATAAGCGTGCTCGGCAGTTCCTCACCACCGCTCGGCCGTACGCTGCGACCGCAGCTCCGGCATGTCGCGGAGGTACTTGCTGAGCGCAGCCGGCCTGCTGCCCTGTCACCGCCCGGCTTACCATCGCCGTCATGAGCGATCGGGAGCTGGCCAGCCTGCACCAACGCTGGAGTGCCTACGAGGAGCTGCCCAACCTCACCGAGCACTGGTACTGGCGGCCCGGTTGGCGAGCCGACCGACAGTTCTACACCTGGCACCTGACCTTCGAACACCAGCTCGAACTTCATGCACTCGTGGCCCGGATCCAGGCTGAGCTAGCGCTGCCGGAGCTGGACCTGGTGCCGGTCGACGGCTTGCATCTCACCATGCAGGGCATTG # Questionable array : NO Score: 3.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.35, 5:0, 6:0.25, 7:-1.34, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 2200458-2199395 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCDI010000004.1 Micromonospora tarapacensis strain Llam7 scaffold_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 2200457 28 100.0 33 ............................ CTTCGTCGCGCCGACCACCCCGGCCGGCACCTC 2200396 28 100.0 33 ............................ GGCCCGGGCGGGCTGGCCACCGCCGTGGCGATC 2200335 28 100.0 33 ............................ GGATGATGGAGCTGGCACGCACCACCGCGCTGG 2200274 28 100.0 33 ............................ CGCGGGGTCAGACATACGTTTGACCTCCATTCC 2200213 28 100.0 33 ............................ ATTCTAGTCTCGCATTGGCGTCACTCATTCTCG 2200152 28 100.0 33 ............................ GCGTGCCTCGGACGGGGTGAGCTGGCCGCCCTC 2200091 28 100.0 34 ............................ GGCACTCGGGCCCGGTGGTGCGGCAATCGAGGGG 2200029 28 100.0 33 ............................ CGGAGCACCCCGATGCCGCGCATCAACGCCGAC 2199968 28 100.0 33 ............................ CGACACCACGCAGACGTTCATCCCCAACCCCGA 2199907 28 100.0 33 ............................ CGGCATCCAGCTGTCGGTCAATGACAGCGAGCG 2199846 28 100.0 33 ............................ CGCGGTACACACCCCAGACACCGAATGCGCCAG 2199785 28 100.0 33 ............................ CCTCCTCGCGCGGGTCACTGGTAATTCCGAACG 2199724 28 100.0 33 ............................ CGCCTACTTCGCCTGGCGGGACGACGAGTGGGC 2199663 28 100.0 33 ............................ GGGGGGTCGGCGACTTCGGTGACGAGCGGCCTT 2199602 28 96.4 33 ................T........... CGGGTTGTGCTGGTTGACCAGGTACGACCCGAC 2199541 28 96.4 33 ...T........................ CCGGACAGCCGCACATAGTCGCGGATATCTCCA 2199480 26 85.7 32 ................T...--.....A GCCAAAAACGAAACGGCAGACGTAGCCGAAAT 2199422 28 85.7 0 .............CG.....A.C..... | ========== ====== ====== ====== ============================ ================================== ================== 18 28 98.0 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : TCTGGGACGAGGGCGGCTACGAGCTTGCCAGCGGACGAAACTACGGCGAGGACGTCGACTTCTGATGACCGTCGTCATCCTCACCGCCTGCCCCGAGGGCCTGCGCGGTCACCTGACCCAATGGCTACTGGAGATCTCGGCCGGCGTCTACGTGGGCCACGTCAACAGCCGGATCCGGCACCGGCTCTGGGCCAAGGTCGTCGAGATGGCCGGGCCGGGCCGGGCGCTGCTGGTCTACCAGCAGCCAGGCGAGCAGCGGCTGTGTTTCGAGGTGCACGACCACCACTGGCAGCCGGTCGACTTCGACGGCATCACCCTGATCCGCCGACCCACCGCGCGAAGCACCTACAACCCCGCCCTGCCCAAAGGCTGGAGCAAGGCAGCGAAACGCCGCCGCTTCGGACGCCGCACCACAGGGCGCAGCGACACGCCGACGGCCACCCCAAGACAAAGTGAAGAAAAACCCGATAGTTGATCTGCAAACGCCCAGCTCAGAAAGC # Right flank : TATATGGACAGGGCCGCTGAACCCATCTCGACTCTGCTGCCCCGGGTCCACCGGGCACCATCCCCGTCCGGTCAGCGCCCCTGGAGGGCCCGGACGTTGTCGCCGAAGGTCCAGCCCTTCGAACCGTCCCAGTTCAGCGACCAGGTCATCAGCCCTTTCAGGCCGCCCCGGTAGGTGTTCCACGCCTGGGCGACGGCCGGTGGCGCCAGGTAGCCGCCGCCGGCACCGACCTGGGCGGGCAGGCCGGGGACCTGCTTGTCGTACGGGACGCGGATGGTGGTGCCCTGCACGACCAGCCCGGCGTTGAGGCAGTCGGTCTGGGCGACGAAGCCCTGCACCGTGCCGGCCGGGTACGAGTCGCCGGAGCAGCCGTACATGCTGCCGTTGTAGTACTGCATGTTCAGCCACCAGAGCCGGCCGTTGTCGGCGTACTTCTTGATGATGGGCAGGTAGGAGCCCCAGATGGAGCCGTAGACGACGCTGCCACCGGTGACGTACGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 5 2666490-2666278 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCDI010000004.1 Micromonospora tarapacensis strain Llam7 scaffold_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2666489 29 100.0 32 ............................. AGGCGGCCCGCGTCTTACGTCAGCGATCAGCC 2666428 29 96.6 32 ..........................T.. CTTATGCGTCCGGATCAGCTCACGCGGGCATT 2666367 29 93.1 32 ...................A..C...... TTCTTGAACTGCCCGTCGGACTGGTCGAGGCC 2666306 29 79.3 0 ...................C.T.CAC..G | ========== ====== ====== ====== ============================= ================================ ================== 4 29 92.2 32 GTGCTCCCCGCCCGCGCGGGGATGGTCCC # Left flank : GGGGAGCGGCGGGGTCCGTCGGGGCGTCGGCATTCGCGGCGGCCGGGAAGAGAATCACGATCATGGCGGCCAGCGTGCTTGCGAACAGCGCATTCTTCTTCATTTTGATCACCAGATCCCTTGGCTTCGTCCGTCCGGATGTTCCGTCCGGAACGCCTCAACTGTGCGGTCAGGTCACCGCAGGCGAATAGACGGAAGAAGCTGCCTGGCACGTAGTTCCCGGACGTCTACGCGGGCTGCCCCACCGCGAAGCGGCGGCAGGTACGAGCGGCTGATGGTGGCGATGACCAGGGGCCTGCCGAGGTCGCGATTCGGTGTGCCCCCACACGTTGTACATCAAAGCCGATCTGCACTTGGCCAACGCACCGTCGGTTATGCCCGGCCAGCCCCACCCGCTGGCTCGTGTGGTGGATCATGTCGCCCGGTGGTCGCAGGCGAACTCCGCTATGTCACCGACATCCCGCCAGTTGTTAGTAGTCGACCGGCAGCAGGTCCCGGCC # Right flank : ACCAAGCCCGCCCTCCGGACAGCGCGGGATAGCCAGAGCTTGTAGGCGTACTCATCTAAAGAGGCTCCGCCTCGAGTCGGGCGTTACGTAGCGTGACGGTGGCGACTGCCGCTCGCCGACCGGAACTGCCGCCGACAGTGCGCGGACTGTTGCGCAGCGAGTCACTCTAGGTGACGAGCTCGTTCGGCGAAGAGTGCGACGGGCCGAAACGAGGGCACGCGACAGGTTGCGTCGAAACGGGCATCCCTACGGTGTCGCGTAACCCGACCAAGCACCGTGTGGCCTCCCTCGCCACGGTCGAGGGAGGCCACACGGCAATCACCGTCTATGCTTCCGCGGCGAGCGGATGCTCCTCGCCGGTGATGCCGGCCAAGGCCGCCGCGACCTCGTGCAGACTTGCCCGTACGTAGGTGGCTGTCGCGCCGATCCCACTACCGCCGTCAGTGTGGCCGGCGTAGGCGTGGGCCACGGCATGACCGTAGGTGCGCTCGACCCAAGTC # Questionable array : NO Score: 3.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCCCGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-15.00,-13.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //