Array 1 20901-24339 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOHQ010000040.1 Clostridium perfringens strain 1805-174 NODE_40_length_26791_cov_83.4638, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 20901 29 100.0 36 ............................. TTACATGAGGGAGATTATCTTTGTGAAAATAATGGA 20966 29 100.0 36 ............................. CAAAAGTAGCTGCTAAAGGAATAATTACTGTTGCTA 21031 29 100.0 35 ............................. TTTTATTTGTTCTTATTTTAACACGTTGGTAATAA 21095 29 100.0 37 ............................. TATAAGTTCTATTACTATATAAAATTTGATATTCTTT 21161 29 100.0 37 ............................. ATATGAGAACTATATTGAGAAAAACTAGGAAAAGTAT 21227 29 100.0 37 ............................. ATGTATAAAGGTGATGAAAATAAGGTATTTGATGTTA 21293 29 100.0 37 ............................. AAGTGCTAAAAATGTATGAATGTTTAAAAAAGCAAAC 21359 29 100.0 35 ............................. TACAAGCACAACAAACACTTCCAGCCTTAAATGAG 21423 29 100.0 37 ............................. CCAAAAACAGAATTGACCTTTCTAATTCTTTCTTCAA 21489 29 100.0 36 ............................. ACGGCTTTTTGAACATAATTTATAAGTTCCTGATCT 21554 29 100.0 37 ............................. TGGTCATTCCCCTTAACTTTAGGCTTTTTATTAGTCA 21620 29 100.0 37 ............................. AACTATACTATTAATCTTGTGCTTCCTAAAGGAGAAA 21686 29 100.0 36 ............................. CCATAATATTTACTTTCAAATTCTTCCCAAGACTTA 21751 29 100.0 37 ............................. TTATAAAGAGCAGGAAAGTAAAAAGAAATCAAAAAAA 21817 29 100.0 36 ............................. CTTTAACCATACAATCTATTTCCCATTAACCTCTTC 21882 29 100.0 36 ............................. AACCTTTCTGATTTCAATTTAACCGCTTCTACTGTC 21947 29 100.0 37 ............................. TATTAATTAATATGCCTAATACAAGTAAATATAAAGG 22013 29 100.0 37 ............................. GAAGAACTTATTGGTGATGTGTGTGTTATAGATATAG 22079 29 100.0 36 ............................. TTTTAAAAACTATATCTTTTTTTAACATTTTATAGC 22144 29 100.0 37 ............................. TTTATTTTCATAAAAGCAGGAGATTGTGAAATAGCAG 22210 29 100.0 36 ............................. ACAACTAGGGCATACAACCTTTTTCATGATTATCTC 22275 29 100.0 36 ............................. TTAAAACGAACTCTTCTCCAACTTTTAAATAATCCG 22340 29 100.0 37 ............................. TTTTGGTATATTAACGGAAAATATATGCAGCTGGGTA 22406 29 100.0 36 ............................. AAAACTTGGTTAGATGAAACTAATAATTTCCCTAAA 22471 29 100.0 36 ............................. TTGAACATGGTTTATGTTTGTCGGTTTGAAGTATAA 22536 29 100.0 37 ............................. TTTAAAATCATTTTAGTAAATTCTAATAAGCCCTTTG 22602 29 100.0 36 ............................. ATTATAAGCAATTTCTTTGTGTCTAAGGGGGTTACA 22667 29 100.0 37 ............................. TAATGAAAGGAGTATTTTTATGTCAACATATCATTTT 22733 29 100.0 35 ............................. TTAGCTTTTAAGTCATTAATAACTTCTTGAGCTGG 22797 29 100.0 36 ............................. AATTTGCTATATTCAACTTTTATTTCTGCTGATTCT 22862 29 100.0 37 ............................. AAGGCATCTTTAGGAGATTTGATTGGCGGGAATAGTG 22928 29 100.0 36 ............................. GAAACTAGTTTCAAACCATTTGAAGCTCCATCAAAA 22993 29 100.0 37 ............................. CTTTATAAAGGTGATGAAAACAAAGTTTTTGATGTTG 23059 29 100.0 37 ............................. TATTCCATATCTTTATCATATTTTAAAAACTCAGTTT 23125 29 100.0 37 ............................. ATGAAAATATTTAATAATGTTTTTTCTTTTTCATTTA 23191 29 100.0 36 ............................. TTGTTTTACCTTGTTAAAAGAATCAGTTAAATAAGT 23256 29 100.0 37 ............................. ATTGGAGATGCTATGGAAGAGGTTTTAAGAATCTTAA 23322 29 100.0 37 ............................. AGAAAGCATTATCAACATGTTGGACAGCAATTAAGGG 23388 29 100.0 36 ............................. TGACTTGGCACTTATAAAGAATTTTGAAAGACTTCC 23453 29 100.0 36 ............................. ATTTCATAATTTTCATTTGCTAATCCAACAATCTCA 23518 29 100.0 37 ............................. TCATTTTAGATCAAGTACTAATCTTAGTTGCAAAAAA 23584 29 100.0 36 ............................. ATGAAAGGAGTATTTTTATGTCAACATATCATTTTT 23649 29 100.0 37 ............................. TTTTTATTAGTTTCGGCGTAACGTTCTGCATATAATT 23715 29 100.0 37 ............................. TATTAGTAAATAAATCTCTTTCTATGTAATCCATAAT 23781 29 100.0 36 ............................. TACTCATAGAAGTTTTTAAATTAGATAGCATTTTAG 23846 29 100.0 38 ............................. AGGATATAAAAATAAGTTTGATGTTTTAAACGCTATAG 23913 29 100.0 42 ............................. CCTCCAATTTATATAAAATACTTATTTTATAACTTCTTCAAC 23984 29 100.0 36 ............................. CGAGTAGTTATATGGGAAAATGTTAAAAATGTTCTT 24049 29 100.0 37 ............................. TACTCATTAAGGTAAGCCATTATAGCTATCTTATTTG 24115 29 96.6 36 ...................A......... GTAGAAGTACCAAATTTAATAAGTATAGAAATATCT 24180 29 96.6 36 ................A............ ATTTTTTGCTCTAACCCTTGCCTTCCCATTTGAGCG 24245 29 89.7 37 A......C...........A......... TCATCTGATAAAACTCTTAAAATAATATATTGATTAC 24311 29 82.8 0 ............T.....T.GG......A | ========== ====== ====== ====== ============================= ========================================== ================== 53 29 99.4 37 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACAAAAGAAGATGTATATGATAATTTCATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGGAGAAGATTTTTATTGATACACTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAAGAGAGAATGAGGCTATTACTAGCTTTTAGCATTTTAAAATTTGGG # Right flank : AAAATAAAAAAAGCATCTTAAAAAGATACCTTTAAACTTAGAATTTTTTGTTTCAATAGCAAGTGCACCTAATGCAGATATATTTCCAACAATGCTTTGGATTGCTTTATATACAACATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTCATATTTAATACTTCCAATATATATGGTAACATTAAGCTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATGAGTAATTTAAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGCTATCTGTCCATTTTTACTTAATTATTAATATATACTTATTAAATTAAATTTAGAACTTTGAATCTAATAATCTATGCATTTAGCAGTTTACATCTAATAGCTCCCTTGAAATTTCCTCAAACCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTCATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //