Array 1 3065983-3065038 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCKF01000003.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL03787 2014LSAL03787_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3065982 29 100.0 32 ............................. AATTAAATGAAATACGACAGCGCACGTTAAAA 3065921 29 100.0 32 ............................. CACCTGGTCGAGGGCTCGAATCGGTGAATAAT 3065860 29 100.0 32 ............................. AAATCCATTCTTGCGATACGATTAATTTACTT 3065799 29 100.0 32 ............................. CAGCCAGTGCCGGTAGTGCAGACGCAGCAGCC 3065738 29 100.0 32 ............................. GCGATTACTGATGGCGGCGTGTGGTTCGGTGA 3065677 29 100.0 32 ............................. GAAATAACTATGTTTTGCTCTGCATTATCTTC 3065616 29 100.0 32 ............................. GAAATAACTATGTTTTGCTCTGCATTATCTTC 3065555 29 100.0 32 ............................. GAAATAACTATGTTTTGCTCTGCATTATCTTC 3065494 29 100.0 32 ............................. TTGACGCGGAGATATATTCATTCAATAAATCC 3065433 29 100.0 32 ............................. CGGAACTTGTAAAGGCGACGCAGGGTTTAACC 3065372 29 100.0 32 ............................. TATGGAAATCAAGGCGCTGGCAGACGGGGAGT 3065311 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 3065250 29 100.0 32 ............................. CGAAGTTTCAGGCGTTACCGCCTGCGGAACGG 3065189 29 96.6 32 ....A........................ AAGACAACTCCTGTCTTTCCATCACTCGAAGC 3065128 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 3065067 29 96.6 0 A............................ | A [3065040] ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGTCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGTGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCTCGATCGCGGGTCAGTGTACGCACTGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3083546-3082664 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCKF01000003.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL03787 2014LSAL03787_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3083545 29 100.0 32 ............................. GGGCTAACGCCATTAAAAGAACTGGTTCCGTA 3083484 29 100.0 32 ............................. CGGTGCTAAAGTTCGGAGAAGATCCCCACGCC 3083423 29 100.0 32 ............................. TAGCCGGGTTCGAGTCGATGAAGCAATCCGTC 3083362 29 96.6 32 ............................A CGCGTCCGACTGAAATCACGCCTCTGTATCCC 3083301 29 100.0 32 ............................. ATAAAATTAAAAATGTGACCCATGTCAATAAA 3083240 29 100.0 32 ............................. TTGTCTTTTTTCATGTTGATGACGTCGCCCTC 3083179 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 3083118 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 3083057 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 3082996 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 3082935 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 3082874 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 3082813 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 3082752 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 3082691 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //