Array 1 6176-5414 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTKQ010000010.1 Listeria welshimeri strain FSL W9-0513 NODE_10_length_100987_cov_90.446784, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6175 36 100.0 30 .................................... GCTGCTGCTTCCGCTTGTTTAAACTCGCTA 6109 36 100.0 30 .................................... CATTGCAACAGGTTACACTACCGCAAAATG 6043 36 100.0 30 .................................... AATATATCGATGTCCTTGACCTCTTGTCCT 5977 36 100.0 30 .................................... GAAATTGTTGGTCACTTTCTTACGCTATTC 5911 36 100.0 30 .................................... AGTATCACAAAAACTATCTGAAAAAGTTGG 5845 36 100.0 30 .................................... TTCAGGGCCTTAGCTTGTTTGAGTTGACCA 5779 36 100.0 30 .................................... AGTCCCGAATTTTACATATCTAGCAATAAG 5713 36 100.0 30 .................................... TGTTGAGGCATTCATATGCCACTCATTTAT 5647 36 100.0 30 .................................... GTATGGGGTAGCTTCTGAGCAAACTATGCT 5581 36 100.0 30 .................................... TAGTTCTTTAGATTTACTACTTTATGGTTT 5515 36 100.0 27 .................................... GAATATTCTCCCCCATCGCTAACAGGG 5452 36 83.3 0 ............CA.....C.....A.A.......G | C,A,T [5417,5420,5425] ========== ====== ====== ====== ==================================== ============================== ================== 12 36 98.6 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGGAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTTCGCAAGTTACTTTAGATTCTGATTATTTTTTACACGTAGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACAAAACATGGTTAAATTTAAAAAGGAGTTAGGTATCTATATGACACAGTATTACTATCTTACTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTTCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATTTCAACTTGCTGTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATCGGCAAAAAAATTGTTACGAGACTTAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAGGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAGCTATTAATAATTAGAAATGAAAACCGATATAACTTTTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 59390-57945 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTKQ010000002.1 Listeria welshimeri strain FSL W9-0513 NODE_2_length_389517_cov_83.017253, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 59389 29 100.0 35 ............................. AAAGCAAAAGCGGGAAACTAATGGCGGCGCGGTCG 59325 29 100.0 36 ............................. GAACGATTAGAGAATGATGACTATTCAGGTTGGAGC 59260 29 100.0 35 ............................. ACTTTTAACGTAATAGTCGCCTTGTCCACTTCGAC 59196 29 100.0 36 ............................. TTCAATAGTAACTTGTTCACCGTCGATATAAATTTT 59131 29 96.6 35 .........................G... TTAATTGCGTTTTCACGTAATCAGGTTGCCCCGAC 59067 29 100.0 34 ............................. GTGGTTGTTGATGATCTTTGGGACGATGATTTTA 59004 29 100.0 36 ............................. ATTATTTTGCACAATTGCTTTTGCTATCATTTGCCA 58939 29 100.0 37 ............................. GGTGAATACAAGGAACTAAAACCAGTTCCGTTTACAC 58873 29 100.0 35 ............................. GAAAATATTAACCCTGTTGTTCAAGAGGTGCAAGA 58809 29 100.0 33 ............................. TTTTTGTTAAAGCCCAAAACGGTTGAACTTCTT 58747 29 100.0 35 ............................. ATGTCTAACATGGTTTGCCTGCGCAAAGTAGCAAA 58683 29 100.0 35 ............................. GAACCATCCAGAAATGTTGCTAATGCCCCCAAAAC 58619 29 100.0 36 ............................. CTTAATTTGAAACAAAATGGCAAAAAATGCGGAATG 58554 29 100.0 34 ............................. TCCTGTATAAGTCTCTTCAAAGTCATTCAGCAAT 58491 29 100.0 35 ............................. TAATTATTGGGGAATTTGTATAATATCTGTTTGTT 58427 29 100.0 37 ............................. GAATTTGTGCTACAAGAAAGCTTTCGGAAAAATGGAA 58361 29 100.0 37 ............................. ACAGACCTAGACAGACTATCAAAAGATTGTTGCTGTT 58295 29 100.0 34 ............................. CTTCAAGGAAAAGTAGTTGCAGAAAGCTATGTAA 58232 29 100.0 34 ............................. TAATAAGCATTATAGGAGCTTCAATTAGCATCGG 58169 29 100.0 36 ............................. ACATCTTTGAAAATTTCTGTTTCGTTTTTGTCTATG 58104 29 96.6 37 ..................A.......... CAGCTACGTACTCCTACTTTTTTGTTTAATGAGTTTG 58038 29 93.1 36 ................A.A.......... AGCGTAGTATCTTGTGAGTAAATACTTGCTAGTTTC 57973 29 89.7 0 ................A......C....C | ========== ====== ====== ====== ============================= ===================================== ================== 23 29 99.0 35 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCAATAGAAAATGGTGGAGCGAAAGTTTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAGGGTGAAATAACACCTGCTCTTTTAGTGAAACTAAGAATGGAGTTAGATAAGTATATTCGAGATGACCAAGATTCAGTAATTGTATTTTCTAGTAGACAGCAAAAGTGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAAACTTCTAACTTCTTTTGATGTTCTCAATCTGTCGACCCTTAGTAGTGCGAAAAATAGTAGGGTTCGACAGATTGACGGAGATGACTGGGGGAGAAAGATTTTAAAGGTTTTTAGTGAATATCCGAAGAAATAAGTTATAATTTTTATGCGATTTTTCAGAGGTCGACAAAAATAGTGCCCTGAGGTATGATGGGAGTAGGAGTAAAAAAGGGCGG # Right flank : TCCTTCCCTCAACAATACACCCCCCAAAATAAAAAAATGGACCTCATCCTCAGTCCAAATCTTTTTCAATACTACCTAAACCAACAAAACCGCAATCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATTCCCTTAGAAGAAGTCGCACCGCCAAACAGCGCCGCCACAACCACACAACTTAAAAAGAAAATCTGCACAGTTTCAGCCATCTCTGCTCCAGCGAAAAACAATCCCCACACAAGTCCTGCTGCAAGAAATCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGGACTTTCTTATTCGCAAGTAGTTCCTTCTCTACACCGAACGTCCTCGATGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCTATCATAACGATGAAAGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //