Array 1 34839-34080 **** Predicted by CRISPRDetect 2.4 *** >NZ_CXOK01000042.1 Xanthomonas translucens pv. poae isolate LMG728, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 34838 30 96.8 36 -.............................. CTGAAGTCCGGCTAGGTTGCTGAAGTCCGGCTAGGT 34772 31 100.0 35 ............................... TTCCAGAACCGCTCCAGTCCCTTGATCCACTTTAG 34706 31 96.8 35 ..........T.................... ACGCGCACGCACGCACAGAATAACGTGCATGTTGC 34640 31 100.0 36 ............................... AGCCTGCCGCAAACGTACACCGACGCGCCCTTCCGC 34573 31 96.8 36 ....G.......................... TTGGCCTGGCCGACCTGGTACGAAACCCACGTGGCG 34506 31 96.8 34 .................C............. TTGAAGGACAGGCGGGGCGCCGAGGCGTAGACAT 34441 31 93.5 35 ............T......T........... ATGCAGAACTAAATGGCTGAGGTCGATTTCTCGTT 34375 31 93.5 34 .............A......C.......... CTGGTGCCAGTAGCCACGTCATTGAAGCAACGAC 34310 31 83.9 35 .CT.......A....A.A............. CTGTACTGGATGGGCCGGCGCGTGTGCGAAATCGC 34244 31 83.9 37 .....A......A....AT.......T.... CTTAAACTCGAGTTGCACGCTGGCACATGGCATCATG 34176 31 96.8 34 ...A........................... AAGAACACCAAGACCTTCGACTGGGACGGCGACA 34111 31 77.4 0 A............AAC...AC....C..... | G [34084] ========== ====== ====== ====== =============================== ===================================== ================== 12 31 93.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : | # Right flank : CGCCTTTACGACGATGTTCTATCGCTTTTACCCACAAAAAAAGGCGCAGTCTCGCGACTGCGCCCAGCGTGCCGCGCCGGCCGGGAGAGAGTCGGCTGGCGCGATCCGTGACTGCGGTGTGCCTAGCGGGACGCGATGCGCATCACTTGACTTCGAATTCCTGCGCCGTTCCGGCCGGCTGGCCGTTCACGGTGACTTCGGCCTTGTACTTGCCGGCCGGCCAGCCCTTGGCGTTGGTGAAGGAGATATTGGTGGTTTCCGCACCGGCCGTGGTCAGCGTCGCGTTTTGCTCGCCGGCGGTCTGGCCGTCCTGGAACAGCAGCTTGGCGCCGACAGCGGTGTTGGTGGAGGAACCCTCGGTCTTCACCGAGACGATGATGGTGTCCTTGCTGCTCAGCGTGCTCAGCGGCGCCACCGTCTTGTCGGCGCCCGCACTGTTGCCCACGGTCACCGAGGCGACCGTCACCGTGCCGGCAGTGGCCGCGGCCGGCGCTGTCTCT # Questionable array : NO Score: 8.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 12661-37 **** Predicted by CRISPRDetect 2.4 *** >NZ_CXOK01000033.1 Xanthomonas translucens pv. poae isolate LMG728, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 12660 31 100.0 35 ............................... CTCCTGCATGAGCTCCTCGGGGGTGAGCGACACCG 12594 31 100.0 34 ............................... TTGAGGGGTACACCCTGCCCTACGGGGCCGTGTC 12529 31 100.0 35 ............................... TTTATTTCGGTGGGGCTAAATGACTGTGCCTTGCC 12463 31 100.0 35 ............................... GTCGAGATGGCTGCACAGTTGCTGCCCTTCGACCA 12397 31 100.0 35 ............................... TCCAAAGTATGCAAGCGGGGCAACGGGTGCTCCCT 12331 31 100.0 36 ............................... GTTTCCGACGCCCTTGATAAAATCAAGGCCTGGAAC 12264 31 100.0 35 ............................... CGTCGTCGGCCGAGCGTTCGCGCGTGACCAGGCCA 12198 31 100.0 37 ............................... CGCGCGTACCTGGCGGATCGCAGGGCGACGGCGGCAC 12130 31 100.0 35 ............................... CCGTCCGGTGTCGTGTAGTAGCTGCGGCCCAGTTG 12064 31 100.0 36 ............................... TTGCGCCAGAAGGTTGTTGCCGAGTCCGCGTCCCGC 11997 31 100.0 34 ............................... ACTTTTAAGTGGTCTAGCCGCTTCCACAAGTCGG 11932 31 100.0 35 ............................... TGTTTTGGTCGTCCAGCCCGGTATTGACCTGCATA 11866 31 100.0 35 ............................... ATCGTCACGGACGATGAAACTGGCGAGTCCACGGG 11800 31 100.0 36 ............................... GACGTGCGCATGCAGAGGCAAACGAGGCTGCCGCTC 11733 31 100.0 36 ............................... ACTTTTAAGTGGTCTAGCCGCTTCCACAAGTCGGCG 11666 31 100.0 35 ............................... CCTTGCTCACCGAAATAAAACTTCGGCGAACGTGC 11600 31 100.0 35 ............................... GGCATCCTGGGCATGCGACCCGACGCCGGCAAGAC 11534 31 100.0 36 ............................... CTCCAGGCGCTGGCACGGCGAGCGGACATCCACAAG 11467 31 100.0 34 ............................... CCCGACCGCGACAGCGCGCGGCGATTTGCAGCGT 11402 31 100.0 35 ............................... TTGTGCCTTTTTCTGAAGGCGTTCAGCCGATCAGG 11336 31 100.0 35 ............................... GACAACGTGCTCGCCCAGCAGTGGGACGAAGACAC 11270 31 100.0 35 ............................... CTGTGCTCGGAGTCCACCTACTGGCTGCCGCAACT 11204 31 100.0 34 ............................... ATCATCATGCTGGGCCACGACCCGGATCCGGCGT 11139 31 100.0 36 ............................... AGGGCGACCGGAAGGAAAAGAGCAGGGTGCGCATCG 11072 31 100.0 35 ............................... ATGTTGCCATTGTTGACCATGCTCTGGTAATAATT 11006 31 100.0 36 ............................... CCGATACTTCTGCCATCGATATCCGTAGCCTCTAGC 10939 31 100.0 35 ............................... CGCCATGGGCAGCGCGTTTGGGGGCATGGAAGACG 10873 31 100.0 36 ............................... CATGATGGAAGAGCGAAACCTAGGCGCAGGCTTCGC 10806 31 100.0 35 ............................... CTCGGCATCGCCAAATCTCCAGAACATCAGTAAGG 10740 31 100.0 35 ............................... GTTTCCGACGCGCTTGATAAAATTAAGGCGTGGAA 10674 31 100.0 36 ............................... GCCTATAACTACTGGCTTGCGCAGGACCGCGACCAG 10607 31 100.0 35 ............................... CCGGAGGTGCACGAGGCAGCGCTGGAGCTTGCGCG 10541 31 100.0 34 ............................... AAGAGAACGCAAGTGAGAGACAGACCATCGCGGG 10476 31 100.0 34 ............................... CAGGGCGACCGGAAGGAAAAGAACCGCGTGCGCA 10411 31 100.0 35 ............................... AACCCCACCGAGATTAAAAACTACGTGGTACAGGG 10345 31 100.0 36 ............................... ATGGGCGAAATCAAGCACAGCGCCGACGGCAAGTAC 10278 31 100.0 36 ............................... GACAACGCCCGGATGCTAATTGCGGCCCTGGGGGAG 10211 31 100.0 36 ............................... CCGGCCGGCAAGGCCGGCACTGTCGCGGCGGTTACC 10144 31 100.0 35 ............................... TCGAGCAGCAGAGCCCGCCCGTCGGCGACCATTTC 10078 31 100.0 35 ............................... CAGAGCGCCCAAAGGCGCATGCGGAGGGCCGGGTC 10012 31 100.0 35 ............................... GTCGTCCAGCGTGCAGACCAACGAGCCGGTATGGT 9946 31 100.0 35 ............................... AGGTCGAACCGCTTACCGTTGTGGGCCACGACCAC 9880 31 100.0 36 ............................... TCGTAGTCACCTCTGTGGTTGTGGAGTTGGGGAAAC 9813 31 100.0 34 ............................... TTTCGGCCCCGTTGCTCGTGCCCCCCGTGTAGGT 9748 31 100.0 34 ............................... AGCCGATCAGGTTGCTGTAGGCCTCACGGACCGA 9683 31 100.0 34 ............................... TGGAGATTTGCCAACGGGCTACAGATTACCTATG 9618 31 100.0 35 ............................... CGCATACCGTCCTCGCCGAAGTGCTGCGTGAGGTA 9552 31 100.0 35 ............................... AAGGCTGCGATCACCACCGCGGCGACGGGCGCCGG 9486 31 100.0 34 ............................... CCGAGCACTACGTAGAGCCAAACATCGCGCTGTG 9421 31 100.0 36 ............................... TCGCTAGGCGCTAATTTAGAGGACTTGGGGAAAAGG 9354 31 100.0 36 ............................... GACAAAGCGATGGCCGGCATCTACGCAGACCGCACC 9287 31 100.0 35 ............................... ATCTGTGCTAGGTCCAGGCGTGTGCTTTCCCGATG 9221 31 100.0 34 ............................... AGGGCCTGCGGCCAATCCGTGGGGTCCTGGTGGC 9156 31 100.0 34 ............................... CTGTTCGGTCGCACGATGCTGCCAACCTGCAACA 9091 31 100.0 34 ............................... CCCTGTACTTCGACCCGTCTGAGGCTTGGTACGA 9026 31 100.0 34 ............................... CCGAGGCGGCCGCATCGCTGGGCCTTCCGCTTCC 8961 31 100.0 34 ............................... TGGGACAGGCAATTCAGCCGGAACTTAAGGCCGC 8896 31 100.0 35 ............................... GGGCGAAGTCCATGCCTACGGCAAGATGCCCAACA 8830 31 100.0 36 ............................... AAAGCTGGGTTTGTGGTTGCCGATAGAGTCAGCGCG 8763 31 100.0 34 ............................... CGATGTGTCTGCGCTCCGCCTTGCTAAGCAGCTG 8698 31 100.0 34 ............................... CGGAGGTGCCGCAGATGGCGACTAACCCCGGCTA 8633 31 100.0 34 ............................... CACGAAACCGAGTAGCGTATGCTGGTGTTGGTGC 8568 31 100.0 33 ............................... ACCATCATTGGTGAGTCCACCTTGGTTAGGGCG 8504 31 100.0 35 ............................... CGCTCGTGGAAGAAAGAGACGGCGCAGTGGTACAG 8438 31 100.0 36 ............................... AGTCTGCCGTACAGCCCTACCGGCTGGGACTGCGCA 8371 31 100.0 36 ............................... GTCGCGTATCGGCAGCACCATGCGATCCATATCCAC 8304 31 100.0 35 ............................... TGAAGAGGGAGTACATCGCCTCGAGCACCTGGTCC 8238 31 100.0 34 ............................... CCAACCAATCCCGCGCGACACAGCGTACGCCCAT 8173 31 100.0 34 ............................... TGGGTTATCGCGGTAATAGCACTTGATTGCGCCC 8108 31 100.0 37 ............................... CGACAGGTCCGCCTTCTCGAGCTCGTCCCGCCCCATA 8040 31 100.0 37 ............................... TGGTTACAACTACTGGCTGGCGGAAGACCGGGATCAC 7972 31 100.0 34 ............................... GTAGCACCTGCCGCGACTATCTGCGAGCGGGTGG 7907 31 100.0 37 ............................... TCACAGTCGCCATGCTTGTACCAGCGACTTACGTGTC 7839 31 100.0 35 ............................... CGCCGCGGCTTATGGCTCGGGGGCCTGCGCGTCCA 7773 31 100.0 36 ............................... ACCAGCAGCGCCTTGCCCCTGAAATTACCCTGCCGG 7706 31 100.0 34 ............................... GGGCAGGTCCTGCCGTCGTGCGGCTCCTGGAACA 7641 31 100.0 35 ............................... CACAAGTCCGCACTGATCTTCGGCGGCGACATCAC 7575 31 100.0 35 ............................... GCACGTTGGCCTTTGCCTCGTCGCGGAAAGCAGCA 7509 31 100.0 36 ............................... TGTTTGTCTGGGATTTCGCAACCCCCGCCATGTGGG 7442 31 100.0 35 ............................... ATGTAGTGCGCGATGACCTTGGCGCTGGTGTTCAC 7376 31 100.0 35 ............................... ACGAGGACCCAAGGAGTAGCGCGTACTGTCACAGG 7310 31 100.0 35 ............................... TCTTGCGCCTGCGTAGCCCGACGATCCGCCAGGTA 7244 31 100.0 35 ............................... CCGCTCATCCGCGTAGATGTCCGTTCGGAGGTGGT 7178 31 100.0 33 ............................... GCCAGAAAGGCCCGTAGCGCTGCGTTTGCAGTG 7114 31 100.0 35 ............................... CGGGTAAAAGCGCAGACCGCTCAAGATATCCCAGT 7048 31 100.0 34 ............................... CGCGGCCGTAAGTACGCCCTAACGAGCGGCGTTT 6983 31 100.0 34 ............................... CGGTCCGGTTGCGCACGTTGGCTTTTGCCTCATC 6918 31 100.0 34 ............................... ATGCCCAACTCGAGATTGGCGAACTTCGCGAGGA 6853 31 100.0 35 ............................... TGGAGGTCCGACCCTTGCGGAGACACGCCGCTCGT 6787 31 100.0 36 ............................... TTATCGAATAGCGGAAACCCGTCGCGGCAATACCGG 6720 31 100.0 35 ............................... CGCCGCTACCGGGCCGCAGGGTGCGATTTCTACGG 6654 31 100.0 34 ............................... TCCCGTGCATTGCGCCGCCGAAGGACTGGGTGCG 6589 31 100.0 33 ............................... ATCCTTAACGGTGTGGAGTATACGGCGTTCCCG 6525 31 100.0 34 ............................... GTGTACGGCGACACTGCTCCGGCTGCTGCTGCTG 6460 31 100.0 35 ............................... CGCCGCTCTGGATCGGCAGAGCAAGTACATTACGG 6394 31 100.0 36 ............................... CTCTTGGTTGTGGATGTAGGGAAACAGTAACACCGC 6327 31 100.0 35 ............................... CGCACGTCGCCGTGGCAGTTGCCATATCCACGGTG 6261 31 100.0 34 ............................... TTCAAAGATCATATCTATCTGCATCTGCCCATTG 6196 31 100.0 34 ............................... CCGCAGCCTCCGTGCCTGCTCCGCGTACACATCG 6131 31 100.0 34 ............................... GTCTCCGTCAGTGTGGGCTTTCTTAGTTTTGGCC 6066 31 100.0 35 ............................... CCCGTTGTGCAGGTGTACTGGGAACAGAGCGCACG 6000 31 100.0 34 ............................... ATCAACGGGATGCTCCAAGCCGTGTACTACTCCG 5935 31 100.0 35 ............................... CCGTTGACGCACGGATGCCCCGCCCGCGTGGGACG 5869 31 100.0 34 ............................... AGCGCCCTAGAGCCGCAGCTATTCCACCAGATTT 5804 31 100.0 35 ............................... CTCGTGGACGCCGATCGCCAGCAAGGCATTACGCA 5738 31 100.0 35 ............................... CTTTTCGGCCGCACGATGCTGCCAACCTGCAATAG 5672 31 100.0 34 ............................... AGTTTATTGGCGTAGATCCACCTGGGGAACTGGT 5607 31 100.0 35 ............................... CTGGGCACGAGCTATTTCCTTTTCGTCATCGGCGC 5541 31 100.0 36 ............................... AGGCCGTGGCCAAGGCAATCGGCACGCACGTGCAGG 5474 31 100.0 34 ............................... TGGCACCGCCAAGATCGATCCCCTGATTGCGCTC 5409 31 100.0 34 ............................... TTCGCCTGGCTCTGGTCGATGCCCTTCTCGGCGA 5344 31 100.0 36 ............................... CTGGTCGCTGTCGTAGTCGCTGCGACGCACTACCAG 5277 31 100.0 34 ............................... TGGTCCACCGACACGGACCTAGGACCAACAGCAA 5212 31 100.0 35 ............................... AGGTCCACCTGGTGCCCCTGGGCTTTGCGCACCTC 5146 31 100.0 36 ............................... ACCATCATTGGTGAGTCCACCCTGGTCCGGGCGCAG 5079 31 100.0 36 ............................... TAGCATGGCCGCCTCAAGCACCGCGGCGGCCTCCAA 5012 31 100.0 34 ............................... ATGTCGTAGTCCTCGTGGTTGGTGGATGTGCGAT 4947 31 100.0 35 ............................... TGGTTACAACTACTGGCTGGCGCAAGACCGGGATC 4881 31 100.0 35 ............................... CCGACCGGTAAGGCCGGCACGGTCGCGGCGGTTAC 4815 31 100.0 35 ............................... ATGTCTGGTCTCGTTGTTTGGTTGGTGTGGGTATA 4749 31 100.0 34 ............................... TTGAACGCAACGATCTGCCCATTACGCAGCACGT 4684 31 100.0 34 ............................... CCGAGCGGCTGCGGATAGAGGACGACGGCGGCGT 4619 31 100.0 36 ............................... AGCTACAAGGCGCGGCGCTGGCGGCAGAGCCGGCGT 4552 31 100.0 34 ............................... GAGGTAACCGGCCCATACGACAAGGCTAGGATTT 4487 31 100.0 34 ............................... GTGCAGCAATCCGCGCCGAGGGCGTCCCGTGCCG 4422 31 100.0 35 ............................... CGGATGACCGCCACATTGCACGCCGCCACCTGCGG 4356 31 100.0 35 ............................... TTCCTGCGGCTTGGGATTTCTGCTCGCAGTTCCTC 4290 31 100.0 34 ............................... ACGTTGTTGCAGGGGCAGTGGCGGTGTGGCCCCT 4225 31 100.0 34 ............................... AGGCGATGAGGGTAGAGTAGGCTTCGGCGACCGT 4160 31 100.0 35 ............................... AGGTCAGCCAGGACCAGGGGGAGCTGTCCGGCGTC 4094 31 100.0 35 ............................... CGGTGCGCTCTCCGGCGTGGCCTCTTCCGCCGCCG 4028 31 100.0 36 ............................... CGCGCGTACCTGGCGGATCGTCGGGCTACGCAGGCG 3961 31 100.0 34 ............................... TCGTGTTTGGGTTGGTGTGGGTAAAGATTAGCGC 3896 31 100.0 34 ............................... TTCCACTTGCCGTGCTCCGGGTGGGTGTCGTCCT 3831 31 100.0 36 ............................... ATGGTTAATTTATCTTCGCAAATTTCCATCCTTGCC 3764 31 100.0 34 ............................... TTGAGGTTGCCACCGTAGCGCGGTGCGGTCTCAT 3699 31 100.0 33 ............................... CTGCGAGGTGAACCCGAACACGCGGCGCGACTC 3635 31 100.0 33 ............................... AGCTACAAGGCGCGGTGCGGGCGGCAGAACCGG 3571 31 100.0 36 ............................... ACGGCGAATTGGCTGATGATCTGCTGACCGGCGACA 3504 31 100.0 36 ............................... CGTTGTGGTCGCCGCTAGCAGCGTACGCCCCTGCGG 3437 31 100.0 38 ............................... CCGCTGCTCGTCGGTCAGGAAGGCAGACACGGAGTAAT 3368 31 100.0 35 ............................... CTGACATGCGCGGCGAGTTTATCCGCGGGTTGGAT 3302 31 100.0 35 ............................... AGACAGCGAGCACCAGCGTTATCGGCATCATCGGC 3236 31 96.8 36 ....................C.......... GACCACTCGGCGAAGCGGGTGACGATGGGGTTTACG 3169 31 100.0 34 ............................... CCTGGAAGACGGCGATGGCCTGATCCTTCCACTC 3104 31 100.0 35 ............................... TCGGCTTTCGCGACCTTCGCGGCCGCCTCGTCCTG 3038 31 100.0 34 ............................... GGCTACTACGCGCCGGCCGGTTCGCGGTTCACGG 2973 31 100.0 36 ............................... TGGATTGCGCCGGTGGAGATCGGCACGGCCTGGTAG 2906 31 100.0 34 ............................... CTGGTCGAGCGCGACGACGAATACAACATCCTCG 2841 31 100.0 36 ............................... CATGCATGCGAATACCCGCTGGACGTGTTCGGCTAC 2774 31 100.0 34 ............................... TTGATCGCCATGTAGGCCATCAGCGCGGCAATCG 2709 31 100.0 35 ............................... CACGTCGGTGCGGTAGCGCCGGCCGGCGGCAGCGA 2643 31 100.0 34 ............................... GTCATCGTTGAAACGCAACTTCACTTCGTTGTCG 2578 31 100.0 36 ............................... ACGGCATTCATGCTGGCGTCGTCTGCGCACCAGACA 2511 31 100.0 35 ............................... CGCAAGGCAGACATCGCTGCTCTGAAGGGATTCAT 2445 31 100.0 34 ............................... GCCTGGTCCGGCTCGCCAACGACAATGCGTGGCC 2380 31 100.0 35 ............................... CCGACAACAACACGCCGAACGATGCATTCGACATT 2314 31 100.0 35 ............................... AACGCGCTCACCGGACACAAGTTGAGTGAGCGCGA 2248 31 100.0 36 ............................... ATCCGCCGCGGTACCGGCACCGTCGGCGATGTGGCC 2181 31 100.0 35 ............................... TGCCGACGCAGCAAGGGTCTTCATCACCCCGCTGG 2115 31 100.0 36 ............................... GATTCCCTGTCGGTCCACCAGTTAGACCCGTTGCGG 2048 31 100.0 33 ............................... ATCGTGCCGGATTATCCGCGGTGTAGCATCCTT 1984 31 100.0 35 ............................... TTGCGTCGGCGCGGCGAGCTTTGCGGCTTGGTCGG 1918 31 100.0 34 ............................... AATTAGCGGCATTTCTTTGCAATCATCGAGCGCA 1853 31 100.0 34 ............................... TGTACCTCACTTTGGCACATGCGACAGACCCGTC 1788 31 100.0 35 ............................... GCGCTTGAATGTCGATGGATGCCAAGGCCACATTT 1722 31 100.0 33 ............................... CTCGGCCGCGTGCACCGCAGCCTCGCGCTCCCG 1658 31 100.0 37 ............................... CGACCTGGCGGGTCGAGGACGTGGTGCCGCCCAGGCC 1590 31 100.0 37 ............................... CAGTCCGATCTGGCGACAGCGAGGACGGGCAAGAAGG 1522 31 100.0 34 ............................... AGCTACGTTGCGCTCGGGCGCTCGGGCACCGGTC 1457 31 100.0 34 ............................... ATCCGTGTATTGCCGGCCGATCATCTTGATGGAA 1392 31 100.0 35 ............................... CAGCTCCATGGCCCGGTCGCCCACCGGGTAGGAAC 1326 31 100.0 34 ............................... GAAGATGCGGCCATCGTGAACGCTCGCGTCGGCG 1261 31 100.0 35 ............................... CAATTCATCCGGCGTCAAGTGCCATGTTTCGCCAG 1195 31 100.0 36 ............................... TTCAGTTCGATGGCGGCCCAGTCCGCCGGGTTCAGC 1128 31 100.0 35 ............................... GCCATTGAACTGCAGCGCGATTTCGTCGCCCTTCT 1062 31 100.0 34 ............................... CTGTAGATGATCCTACGTTTTGGAAGAATTCGAT 997 31 100.0 36 ............................... CAGACCAGATCGACGCCCGTCTGATCGCTGATGGTC 930 31 100.0 37 ............................... GAACAGCTACGCAATATGCGCGATGCGGTGATGGCAC 862 31 100.0 35 ............................... TTATTTATGAGCAATCAAACACGCACACGCACCCA 796 31 100.0 36 ............................... TTTTTCGGTTAGGCCGGCTTGATGCAGGCCGCTCGG 729 31 100.0 35 ............................... TGACGGCGGCAGAGTCGAATGTCTGATTCGCTATT 663 31 100.0 36 ............................... AGCTTCCAGCGCGCTTACGGCGCGGGCGTAGCGAAG 596 31 100.0 35 ............................... TTGCGCACAGTCTCGGAATTCGCCTCCTCTCGGCC 530 31 100.0 36 ............................... CCCTTCATCCTGCAGACCGGCGCATCGCCGATCCCG 463 31 100.0 35 ............................... ATCACCGTCCACATGCGGCGCTGCCCGTGCAGGCC 397 31 100.0 36 ............................... TGGATCAGCGCCACCGTGGGTGCCAGGTACTGGAAC 330 31 100.0 35 ............................... CCGCATCTATGCCCAGCTCCCGCACTCGCCGGGCG 264 31 100.0 36 ............................... GACGGCCCCGGCGCGCTTGCGCGCCGAGGTTTCAGT 197 31 100.0 33 ............................... GTGATCGTGTCCCCGAATGCTGGTGCAAGAACA 133 31 100.0 35 ............................... CGTCTTTACGCAGCTTGTCAGGGCGCACGCGGCAG 67 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 192 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : TGAAAAGGCCGCCGCTCCATGATGGTTCTGGTCAGCTACGATGTCAGCACGAGCTCCCCAGGCGGCGAAAAGCGACTACGCAAAGTCGCCAAAGCCTGCCGTGATCTCGGCCAACGCGTGCAATTCTCGGTCTTCGAAATCGAAGTGGACCCTGCACAATGGGCCGCCTTGCGGCAGCGCTTATGCGACCTGATCGATCCAGGCGTCGACAGCCTTCGCTTCTACCAGCTCGGCGCGAAATGGGAAGCCCGCGTGGAGCACGTCGGCGCCAAGCCCAGCCTGGACCTCAAAGGCCCACTGATCTTCTGACGCGAACCGCAAGCGGCCGGGGAAAACGTGGCAGGTTCGCACAACACGCCAAGTCATTGATTTTAAATTAAAATACTTGACCCCCTCCGCTCATTGCATGCCCGCGGCAGCCCAATTAGATTGCGTCTTCGAAGGGTTCCGCAAAAGTGCGGACTTTTTCCCAGCCCCCATCAGCACTTATGCTCAGGGCA # Right flank : CGTTGCAGGCAAAGGTCTGCGCGGCGTGCACATCTAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //