Array 1 64134-63616 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHWT01000005.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-4698 NODE_5_length_177860_cov_91.866255, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 64133 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 64072 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 64011 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 63950 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 63889 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 63828 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 63767 29 96.6 31 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGC 63707 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC G [63706] 63645 29 93.1 0 ............TC............... | A [63618] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 82001-80448 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHWT01000005.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-4698 NODE_5_length_177860_cov_91.866255, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 82000 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 81939 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 81878 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 81817 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 81756 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 81695 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 81634 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 81573 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 81512 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 81451 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 81390 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 81329 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 81268 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 81207 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 81146 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 81085 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 81024 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 80963 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 80902 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 80841 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 80780 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 80719 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 80658 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 80597 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 80536 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 80475 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //