Array 1 8933-9083 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADHZX010000124.1 Leptospira borgpetersenii serovar Balcanica strain Bal_Burgas NODE_124_length_10185_cov_59.496, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8933 29 100.0 32 ............................. AAACTCTGTCGTTCGAATCTTACGGGAGTTCT 8994 29 100.0 32 ............................. ATCCTGCGCCTCTTCTTTGAGTCTTTCCGGAA 9055 29 79.3 0 ......................GA.TGTA | ========== ====== ====== ====== ============================= ================================ ================== 3 29 93.1 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : TCCCGAATAATTGCGATCTCTTGTTTCGTTCGATGTGTCAATGTGATTCTTAGCCCGGTTCCGCATTTTTCAATGAAAATTGATTTATAGATAGGAAAGACACTCAATAATTTATCGTAGAATGGAGAATCTTTTATATTTCAAAACGACAGTTCCCTGGGAGAACAACTCTGATGAAATATTTTAGACAATCCTGTTAAAGGTTTTTCACACTTTCAGTCGGTATTTAATATGGGCATCTTACTTTTCCTCTTTCTAATTTTGTTTTTAGTTACTTCCCTTTTTTCAGCAGAAAAAGTAAGCGTACCTTAGATGTTAACGCTAGTGGCAATCTTCAAACACAGGGTTCCGCGCCGTATATCAGCGGGACTTGATTACGGATAAGTTTCCTGAGAAGCATATGTTTTTAGTAAGGCGATTTGTCATCATAGATTGACTCGAACACAAAACCCAAAAATAGATTGCAAAAAATCCGGATTTATCCTATACAAGTTTTTAGC # Right flank : ACGTAAGATCCATAAACACCAAAATGAGGTACGTAATTGTGGAACTCCCACGTTCAGAAGACCGACAACAGTGTTGCTACGATTGATCAGACTGACATTCGCGTGTTGTTTTGGTATACCGCAAATAGGAGTTGTTCTTAGTCTTAAAACAACTCAGCACAACGCTTCCTATGAAGCGCGTTTTGTGAATCAAATCTGCAAAGCGGGCTACTTCAACACTGAACTAAAAAGTATTCCTTCTTTATCGTACATCTTCTCTAACGAAATAAATTATCTGATGAAATATTATTTTAACTTCGAGTTACCAGATTCGTCACCGCCCAAAGAAATCCGGATAACTCTCTGGAAATTGAGGTGATCATTAACTGAGGAGTTTTTCCTCTTAACTGTAGATTACAAAACTTCTTGTGTAACCTGAGAGAAGCTTTTTCCGCTAAAGAAACGACTAACGCAAGTCATCCCGATCTTCATGCAGTTACAATTTTACTTCCTGTTTCAGG # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12328-12602 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADHZX010000014.1 Leptospira borgpetersenii serovar Balcanica strain Bal_Burgas NODE_14_length_48291_cov_49.9022, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12328 29 100.0 32 ............................. TCCTGAATAGACGTATTAGAAAATGCTCTAAA 12389 29 100.0 32 ............................. TAGCCAAAGAGAAGCCAATCTTGTTTTCCGGC 12450 29 100.0 32 ............................. TGTTGATTTTGCCAATATTAAGTTTTCGGCAA 12511 29 100.0 33 ............................. CGACCATATCAATTTGCAGGTGAATTTTAAGGC AG [12535] 12575 28 72.4 0 ...............A.AACC..-.C..A | ========== ====== ====== ====== ============================= ================================= ================== 5 29 94.5 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : CGATGCACACTGGTTCGGGGAATTGGAAATCCGGGGAAAATCAACCCGACGAATCTGGAAAGAAAACATCCAAGTTATGATCGAAGTCCTTGGACATGTTTTAATACATCCATCAAGGAAAACATAGATCTAAGGAACCTGATTCAGAAAGGAGATCATCCCCATAAGTTTAAAATTTATAGATCGAAGGATAAATCTATTCCGTTTTTTTAGGACATTCAATTCATCTAATTCCGATATACATAATATTATGTTAAACAATTTCTCTCTTTCTGAACAAGATCGTTCCCAATCCTTTCAAAATATTCGGTCTCTTTCTTTGGTTCCGAAATTCGTTTTCACGACGATTTGTTTCGCGAGATACTATATTTTGAAGGTTCCTTCGATTTTTCTCTTACAAACCGAATCGTTTTTGTGAACAAAAATACAAAACCAGATCATATCTTTAAAAATAACTCTAAGCTGACATAATATGTAAAATTACTATATAAATTTTTAGC # Right flank : ACAAGTTGAAGAGGACTTTAGAATCAGAAGGATCCAAACGCACATTTTTGAAGTGTTCCGACAAGAATGAGGTTTTTTACTTGCAAAAAGTATGATTTTCCGATAGTGCGAAGTCCTCCAAGCCTTTCCTCCTACCAAAATTAGGGAAAACTCATGTAACGCTCTCAATAAATCACTTGCAGGTGTAAGTTTTACGGTGGATTTGTCGGAATTCCGACAGATTTATATTAGAGTTGTTGAAAAATTAATTCTCTGTCCGTTTCTGCTTCGTTGAAATGGATGTTTGAAGCGGTTTTGTTAATCCGAATCATGGAATTTTTCAACAACTCTATTGAGATCCAAATACTTGTGGGTAAGGTTATGCAAAATCGGCGTGGGGTTGAACCGAAGTTACAGAGAATAAAACCATTTTCGTTCAATTGAGAATTTTTACAACGTAGAATCAATGAATGCAACTTTAAGTTTTTAATATTCCTGTTTTGGAAAAATTTCATTTTTTC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //