Array 1 92319-85805 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOVY01000011.1 Chryseobacterium sp. SC28 SC28_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 92318 47 100.0 30 ............................................... ATTCTATCCACAGAAAGCAATTCCTGAACG 92241 47 100.0 30 ............................................... TTTCTTTTGCCACTTCGCGGCTGATAGCAT 92164 47 100.0 30 ............................................... TCGTCTGGCCTCCGGAAACAATGTTACAGG 92087 47 100.0 30 ............................................... AATAAGTCTCTCGTGATCGTCAATGTTTTT 92010 47 100.0 30 ............................................... CCCAATCAGGTATCAGACATCAGCTTTTTA 91933 47 100.0 30 ............................................... TATCCCTGCTCAAACCTCATACTTTGCGCT 91856 47 100.0 30 ............................................... CTCGGAAAAGCGTTGTTGGACAAAGGTGCT 91779 47 100.0 30 ............................................... TACAAGGGTTTAGGCGGAAACTTTCGGCTT 91702 47 100.0 30 ............................................... GAGAAATCGCTATCACCGCATTAAGAATTC 91625 47 100.0 30 ............................................... TTTTTTACCGAAAAGCACATAGCAAAGTTA 91548 47 100.0 30 ............................................... AAGATTTATAAATAATATTAACAAACATCG 91471 47 100.0 30 ............................................... TAACCGGCAATTTAGATGCAGTTAAATACT 91394 47 100.0 30 ............................................... GAGCTGGCATAATCTTTCATTTTGACGATA 91317 47 100.0 30 ............................................... ATATTGAATTTAAAAAACTTGTTGATTTAG 91240 47 100.0 30 ............................................... TCGTTTGCTCCAATTAATAAAGCGAAGAAT 91163 47 100.0 30 ............................................... ATAATTATGCCAGTATCGGAAGCAACCGTT 91086 47 100.0 30 ............................................... CCGCGGCGTCGTGCAACGGGCTGCTCATCC 91009 47 100.0 30 ............................................... CGATAGAGGAAATTGATAATATTTCCGAAT 90932 47 100.0 30 ............................................... AAGTACATGGCCAGCACGACGGCTAGATCT 90855 47 100.0 30 ............................................... AAGATTCTTCTCGGTAAGCGTCAATCTGTT 90778 47 100.0 30 ............................................... TGTTCAAATTTCTACAACACAGATTTAAGT 90701 47 100.0 30 ............................................... GTAATGAAAGTAGAAGACCTTATCCGCTTA 90624 47 100.0 30 ............................................... TATCTTTATTTACAGAAGATTTTAATGGTA 90547 47 100.0 30 ............................................... AAGGTCAATTCCGTTAACAATAACCTATCA 90470 47 100.0 30 ............................................... GGGCAGGCATTTTAATCAAAAATTCAATAT 90393 47 100.0 30 ............................................... CGACGGGATCAACATAAAGTATACACACCT 90316 47 100.0 30 ............................................... TTGTTTTATCAAAGTGCATATTGATTTGGG 90239 47 100.0 30 ............................................... TCTACCAGAGATTTTGTCGAATAAAAATGC 90162 47 100.0 30 ............................................... GTAATATACATTATCACATCGTTACAGATT 90085 47 100.0 30 ............................................... CCTCTATTTGACCATTAATCTGACTTATTT 90008 47 100.0 30 ............................................... TTCTGTGAAAATTTTTCTTCAAAAGCTACA 89931 47 100.0 29 ............................................... CGAACTCATCGGCATCGGCCGTGAATTCC 89855 47 100.0 30 ............................................... ATAACAGTTGATTTTTCTTCAAAACTTTGA 89778 47 100.0 30 ............................................... ACAATATTCAATGGAACAAAAAATAGCAGT 89701 47 100.0 30 ............................................... GGCAAGTTCGTTATCATCCCATTCGGTGTG 89624 47 100.0 30 ............................................... GGCAAAACTTTGAGAGTGCTGGAAATGCGC 89547 47 100.0 30 ............................................... TAATTGCGGATTAGTTATCATTGATAACAT 89470 47 100.0 30 ............................................... CGCCCTATCGGCTACACACCACGTTATACG 89393 47 100.0 30 ............................................... TTTCCGTAATCGTAAACTACAACTGCACCG 89316 47 100.0 30 ............................................... TCCAGCTCGCGCCCGTCCATAACCAAGATG 89239 47 100.0 30 ............................................... ATTTGAATCAAAAATAACAATAAAACTGCA 89162 47 100.0 30 ............................................... CCACAACGGATTGACGTGATCGAGACTATG 89085 47 100.0 30 ............................................... GACGCCTGAAATGCTGTCATTATTATTCAC 89008 47 100.0 30 ............................................... TTTTTCCGGAAAATTGATTCTCAAAGCATA 88931 47 100.0 30 ............................................... TATCATTTTCCATTATCTTCTGGTGTTTTA 88854 47 100.0 30 ............................................... ATACACGTTATCACAGAGTGGGTTAAGGAT 88777 47 100.0 30 ............................................... CTGTCGTCTGTATATCCATTAGCACGAGCG 88700 47 100.0 30 ............................................... GGTACGATATAATAACCCATATCGTCTATA 88623 47 100.0 30 ............................................... TGCGGCCCCGTTGAAGCCATTCATCGTCGG 88546 47 100.0 30 ............................................... GGATAACTTAAACGAAGAAGAGCTTAATGC 88469 47 100.0 30 ............................................... ACATAAAGCTAATTGATGAAGATGACTTAA 88392 47 100.0 30 ............................................... CAATTAGCCGTATTAGCTTCATCTTCATCA 88315 47 100.0 30 ............................................... GATAGAAGCGCCCGTCCGCGCGCATCCCGA 88238 47 100.0 30 ............................................... AATTATGAGGCATCCAGAATATCATTTACA 88161 47 97.9 30 ....................................C.......... ATTTCAATACCGAACATGAAGCACATTTAG 88084 47 97.9 30 ....................................C.......... CAAGAATTTTATTTAACTGATTTCTCAGCA 88007 47 100.0 30 ............................................... TAAATCCTCTGCTTTCTACATAGGTTGCAT 87930 47 100.0 30 ............................................... TACACACCTTACTATGACAATACTGATTAC 87853 47 100.0 30 ............................................... GAATCATCATAGCCAGCGAGTTGCCGGATT 87776 47 100.0 30 ............................................... TATGCCGTCTTTCACGACGCCAAGTAGCGC 87699 47 100.0 30 ............................................... AGATACTCAAACCTTGCAAGTATTTCGTCA 87622 47 100.0 30 ............................................... TGAGTTAGATATTGAACACGATGACGTTAA 87545 47 100.0 30 ............................................... TCGTATGTTAAAGTTTTTGTTAAAGTTTTA 87468 47 100.0 30 ............................................... ACCATGTGCAGAAATATATCCCGCCAAACC 87391 47 100.0 30 ............................................... TACTTGGATAGCAGGTCTTTTAAATTGTTT 87314 47 100.0 30 ............................................... GTAAACCGATTTTTTCCCTCAAGTAAATGT 87237 47 100.0 30 ............................................... TATTTTTGTTTTCAAATGAAAAAAAATGCT 87160 47 100.0 30 ............................................... GTTATTAATAAAAATCCGTTCGAGGCTATA 87083 47 100.0 30 ............................................... TGTTTTCGAAATTATACTCTATCGCTTCTG 87006 47 100.0 30 ............................................... TACAAAGCTTTGCGTCATATCTTCTACGTG 86929 47 100.0 30 ............................................... GAACTGACTGATATAAACTTTCAAATGAGA 86852 47 100.0 30 ............................................... GAGTACTTGTAACTAAACCAAAGATAGCAC 86775 47 100.0 30 ............................................... TAATTTTCTATGGTAGTTATCGTAAACCCT 86698 47 100.0 30 ............................................... GGACGGCAACAAGATAATGGACAAGACAGG 86621 47 100.0 30 ............................................... TGTGAAACAGAGATTAAGATTGCGCTTGAC 86544 47 100.0 30 ............................................... CCATTTCCCCAATTAACTACAACTGTTGTA 86467 47 100.0 30 ............................................... AAAGTCGATGTCCAATAGACGTCTTTTCCG 86390 47 100.0 30 ............................................... TTGTGGAATAGCATTTAACGGGGTATTAGC 86313 47 100.0 30 ............................................... AGACCAGACATCATCTTAATCGATGACATC 86236 47 100.0 30 ............................................... GCTGTATAAACCCCTGTCTCTGCATCAACC 86159 47 100.0 30 ............................................... TTTTCTTCGTGTGTAGCAATAGTCTGGAGA 86082 47 100.0 30 ............................................... GATAGAGTATGTGCGGCATCGGCTGAATGA 86005 47 100.0 30 ............................................... CTTCATTTATTTCGGAAAATACTTTGTCGA 85928 47 100.0 30 ............................................... CCAAGAGTCAGGAAGGAGCTCTTCACGGCA 85851 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 85 47 100.0 30 GTTGTGAATTGCTTTCATTTTTGTGTATCTTTGGGATACAACACAAC # Left flank : GCTTTCATTTTTGTGTATCTTTGGGATACAACACAACCGGAAGCCGTCTGATGAATTGTATGTGG # Right flank : CTCAAAAAATAATCTACTGATTGTCAGTAGATTATTTTTGTTTTTAGGATTTTAATTTTAGAATAATTCTAATTGCTGGAAGGTAGGCGGCGGTTCTTCCTTGTTTCTGGCAAAGAAGATTTCGATGTCACCGAATTGTTTATCGGTAATGCACATAATCGCCACTTTTCCCGCTTTTGGCAGTATAAATTTGACCCTTTTAATATGAACTTCCGCATTTTCTCTGCTGGGACAGTGGCGAACATACATTGAAAACTGAAAAAGTGAAAATCCATCATCCAAAAGACGTTTTCTGAACAGATTGGCATCTCTCACGTTGGCCTTGGTCTCCGTTGGCAAATCATACAAAACGAGTACCCACATAATTCGGTAGGCATTAAACCTTTCGGCATTCATATCAATTCGGGATAGGAAATCAAGCGTTTTTCTCCCGTATAACATTTGTAAAGCGATGTCGCAGTGGTTTTTACCGCAACCAACAAGGGTCTTGTTTTTCCGTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCATTTTTGTGTATCTTTGGGATACAACACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCATTTTTGAGTATCTTTGAGATATAACACAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.60,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 807-67 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOVY01000018.1 Chryseobacterium sp. SC28 SC28_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 806 47 91.5 30 TCC.................................C.......... GCTTACGGACAGGTTGCGGATGATGTTATG 729 47 100.0 30 ............................................... TATCTGAAACCATACACAGTTTATCATCTG 652 47 100.0 30 ............................................... TTAATTTAATTTTACTGTGAATGATTTCCA 575 47 100.0 30 ............................................... CTTACAAAATTCTCAAAGGGGCGACCTTTT 498 47 100.0 30 ............................................... TATAGCCGAGTCAGAGAGCTTACTCAAGTC 421 47 100.0 30 ............................................... CGTAAAACATCCGGACTGCGAGATGATTGG 344 47 100.0 30 ............................................... TAATGCTCGGGGATAATGTCAGACCTAAGC 267 47 100.0 30 ............................................... CCTTTAGGGTAGTGGATGTAAGGATATCCT 190 47 100.0 30 ............................................... TGCCATTTTTTGCGTTTTTATCGTGGTTTA 113 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 10 47 99.2 30 GTTGTGAATTGCTTTCATTTTTGTGTATCTTTGGGATACAACACAAC # Left flank : TCCAGTTTTTAAAATCACTTAACGATTTTTTGTATTGCCTTCGGAATTTTTTGCCATTTACCCCGTACATTTCGCCGATGGTTTCTAAAGGAAGGGCTTTAGTATCGGCTGATTTTTTTTAAGAACTCTGCAAAATCTTGTGTCATGCGAGTGCCTTTTGCGATGAGATTCCAATCTCGTTGTAATATTTTTCCAGATTTTGTGTCTGTCCATCTTCTACGTTGGATATGAAGTTTTACGGGTTTTCCTCGAAGCGGAAAATCATCCACCGTAATTTCTTCATGAAAGCCTTTGGATTGTAGATGAAGTGAGGAAAACTCTTTCGGAATGGTATTCTTTTCTTCAAAATAAATATGAAGCTGTCCTTCTTTTTCCTCAAATTTTACAATATCGAAATACGCCACTAAATATTCGGGCAGTAATAACTTTAATAATTCTGGACTTGTAAACACAAGACAAAACTAAGGATTATTAAACTTCTCCCCAACTTTTGCCCCTGA # Right flank : CTATTCAGATTTATACAAGACAGATTTAAGTGTTGTGAATTGCTTTCATTTTTGTGTATCTTTGGGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCATTTTTGTGTATCTTTGGGATACAACACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCATTTTTGAGTATCTTTGAGATATAACACAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.60,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 3987-2246 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOVY01000018.1 Chryseobacterium sp. SC28 SC28_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 3986 47 95.7 30 .CG............................................ TCGCCTGCTTCGGGATCATCATTGCCAGCG 3909 47 100.0 30 ............................................... AGTTAAGGATTTCTATGGCTTCTGGGTCTC 3832 47 100.0 30 ............................................... TAATTTTGGCGCATTAGGCGGCGATATTGG 3755 47 100.0 30 ............................................... CTCATAAGAATGAGGAAGTAACATTAGAAA 3678 47 100.0 30 ............................................... TAGTATATTTGCGTTTGTCTCAAGGTCTGT 3601 47 100.0 30 ............................................... TATTTCTATATCCACGAAGTTAGGCATTTC 3524 47 100.0 30 ............................................... TCCTATCATTATGATAACTCAAAGTCTAAA 3447 47 95.7 30 .....T...................C..................... ATGGACTATTTAAACGCCCTTTCGGAAGAC 3370 47 100.0 30 ............................................... AACCGCTTCAATTAAATGGCGTTGAATTCC 3293 47 100.0 30 ............................................... TTCTTTGAAGTCTACTTGTCCGTAAACCTC 3216 47 100.0 30 ............................................... ATGTAGATAGCGATAGCGAAACCGGCAAAT 3139 47 100.0 30 ............................................... ATTGCAAAAATGTATATACCTTTATACCAT 3062 47 100.0 30 ............................................... GTGTGCAAAAAATAGGTAATACGTTTACTA 2985 47 100.0 30 ............................................... GATGATATCTCAATGCGCCGAAGTGTAGCA 2908 47 100.0 30 ............................................... TGCACACCCTTTAGGTTTGGTTTCTTACGT 2831 47 100.0 30 ............................................... TAAATAACAATAGCCCCCCAAAGATAACCA 2754 47 100.0 30 ............................................... TCATTAATAAAGGACTTGGGCGATGAAGCT 2677 47 100.0 30 ............................................... AAGCCTTTGCATCTGCATTATTGGCGAATT 2600 47 100.0 30 ............................................... TGCGTCCGAAACGAGGAACATATTTGAGTT 2523 47 100.0 30 ............................................... AATATCTACCGCTACTACGACGCCGTTTTT 2446 47 100.0 30 ............................................... GAAGACTTTTCTGGTAAATTCTGATCCAAG 2369 47 100.0 30 ............................................... GTTTTTGGATTTTTGCCGAAAATACGTTGC 2292 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 23 47 99.6 30 GTTGTGAATTGCTTTCATTTTTGTGTATCTTTGGGACACAACACAAC # Left flank : TGAGGGGAAAAAAATTCATTTTTTTGTGCTTCATCTACCATCCAAGAGAGAAGGCGACATCCAGAAAAAACATCGACTTTACATCATTCAGCAGCTTCGAAAAACTGTGCGAAACCTTTGCGACCAAGGAGAACCCATCATTTTAATGGGCGACTTTAATGAAAATCCCGACGCAGAAGAAATGCAGTTGCTGCTTTATGACACGACTGGAAAAAAAATACTGACCAACCCTTTTGAAACGCTTTACCTCGGCGGCCGATTTACGACTTTTCATAATAAAAAAGGTCTGGGCTTTGATCAAATTCTGTTTAGCGAGGAAATGCTTTGTGAACAACTCAATCTCGAAACCAATACGGCCGACATTTACGATTCTCCGATTCTGATAAATAAAACAAACGGACACAGACACTATCCCCTGAGAACCTATTCTGGATCTCGGTATATTGGCGGCTACAGCGACCATTTTCCAGTTCTGGTGACGCTGAATCGGCAGGAATAGA # Right flank : CCAGCCGCGCGCTGGCGGTTCGTCCACCTGGTTGTGAATTGGGATCAGTATCAAAAGTTGGGGACTACGCAAAAATTTGGGATAATCTGAAAAGGAAAAAAGCTTTGTCTTTAACACCTCTGAGTTGAAGTCTGAAGTTTTTGATTTTAGCATTGAAAGATTCTGCGGAAGCGTTGGTACTTCTTATTTCAAAATAATTGAGAATATCGTTATAATGGTTGGTGATGGTGTTTTTAAGTGTTGTAAAAGATTTAAAACCTGATTCTTCAACATCTTTAAACCAATGAGCCAGTTTGAGCATGGCAACAGATTTTGTAATATTTTGGTTGTAGATTTTTCTTAAACCGTCCGCTAAATTGTAGGCGACTTCTAAATCGGGGTATTCTCGGAATAAAATTCCTGCTCTGAGTCTTTGGTTTTGTGTCCATTTTTCACAGCTTTTATACAAAAAATAACGGCTTCTTGCCAAGAGTTGCTTTCGGGTATCGTTGTTTTCAAAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCATTTTTGTGTATCTTTGGGACACAACACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCATTTTTGAGTATCTTTGAGATATAACACAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.60,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //