Array 1 260225-260065 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWYN01000001.1 Clostridium botulinum strain ATCC 25763 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 260224 28 100.0 38 ............................ ATTCATCTGTTATATCTATACCTAGAATTTTTATAAAA 260158 28 100.0 38 ............................ ATTTGTGAATGTATAGGGAAAAATGACCAAATGTTAGT 260092 28 92.9 0 .......A.............C...... | ========== ====== ====== ====== ============================ ====================================== ================== 3 28 97.6 38 GTTGAACCTTAACATAGGATGTATTTAA # Left flank : TCGACCATCATTTATAATTTTCTGTTGAACAGTAACATAAGATGTATTTAAATTTATTACAATATTCAGGTATAACAACTGTAAAATTGGTTGAACAGTAACATAAGATGTATTTAAATTATTTTAAATATTAAATAAATAGAGGTGATTTTAGTTGAACAGTAACATAAGATGTATTTAAATGATGAAACCATAGTAGCTAATCATCCATGGGCCACGTTGAACAGTAACATAAGATGTATTTAAGCAGAGAACTTAAATTTGTGATTTGGTGTGAGTTGCTTACTTCTTGGAGGAGAGGAGTAGAGTTTCATTAATTGAATTTTTCTAGGTACAATAAATTTGCAAACCTATTCTAGCCGTTGATATATAAGGCTTAGAATAGGTTTTTATCATGTGCTTATGAAAAAACAGAATCACTTGGAAAACTTTTTCTAAAACCTTGTAAAATCAATGGTTGTATGATATTCTTAAAAATAAGGAATAGCTATTTTGCTATG # Right flank : GCAGAGAACCCAAATCTATGATTTGGTGTGAATCGCTTACTCCTTAGAGAGTGGCATAAGGATTTTTATAAAACTAAACTATGCATTGTGATAACTTCTATATAAATTATTAGATAAAGGGGGATTTTATGAAAAATAAAGTTACCAATAATTTAAATTTTGTTGCAGCAATATTGCTTGGAATTGTGGCTATGTTAAATTTTTTTCAGCATAAAACATTGCTAGGAATTACATATATCTGTTCAGCAATATGTTTTTGTACACTTGAATTTTCAAAAAAGAAAAATGCAAAGCATAGATAAATTTAATTTTAAAAACCTGTCTATTTTTAGGACAGGTTTTTAGTATCTAAAGGAAATAGATAGAATAGTTTTTTGTAGTCATGTAAATATTATATATTATTTTATATTTTTGAAGGATTATCCATAATTCTGTAGAAGAATATTTGTGTAGGAAATATATTATAAAAATATGGAGGGAGTATTGTGGATAAATTTCGT # Questionable array : NO Score: 5.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 261225-260477 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWYN01000001.1 Clostridium botulinum strain ATCC 25763 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 261224 30 100.0 36 .............................. TTTTTTATAAGTTGTGGTGGTACATTAAAAGCTATA 261158 30 100.0 36 .............................. ATGATTATCACTAAGGAGAGTGAAAAATGAAAGTTG 261092 30 100.0 35 .............................. TTGTCAGTAATATATACAGTCTTGTCCCATGCAGG 261027 30 100.0 35 .............................. GTAATAATATATTTTTTTAATTTTAAAACTTCCTC 260962 30 100.0 35 .............................. GACAAAAGGGATAGATTAGAAGATTTATTAGATGA 260897 30 100.0 36 .............................. GATAAGGTTGTACAATATTTTAATAAAAGAGGGATT 260831 30 100.0 36 .............................. GGAATTTCATTTAATATAGCTGTGTTATGTACTATT 260765 30 100.0 34 .............................. TCATAAATAAATCGACCATCATTTATAATTTTCT 260701 30 100.0 36 .............................. TTATTACAATATTCAGGTATAACAACTGTAAAATTG 260635 30 100.0 34 .............................. TATTTTAAATATTAAATAAATAGAGGTGATTTTA 260571 30 100.0 35 .............................. GATGAAACCATAGTAGCTAATCATCCATGGGCCAC 260506 30 93.3 0 ............................GC | ========== ====== ====== ====== ============================== ==================================== ================== 12 30 99.4 35 GTTGAACAGTAACATAAGATGTATTTAAAT # Left flank : ATATAGTTGCCAGGGAGTTATGTTGAATAGTAACATGAGATGTATTTAAATACGTGATGCAGATGCATATGAGATAGCATTAGCAGGTTGAATAGTAACATGAGATGTATTTAAATTCTTTAATTAAGTCAAACCCATTATTTAAATCATAAGTTGAATAGTAACATGAGATGTATTTAAATTATAGTTCATAAATATTATTTGTATCATATGTATCATTGAACATTAACATGAGATGTATTTAAGCAGAGAACCCAAATCTGTGATTTGGCGTGAATCGCTTACTCCTTAGAGGCAACGAGAAGGAGTTTCATAAATTGAATTTTTCCAGGCGTAACAAATTTACAAACTTATTCTAGCCATTGATATATAAGGCTTAGGATAGGTTTTTGTTTTATATTTATAAAAAAGTAAAATCACTTGGAAAACTTTCTTTAAAACCTTGTAAAATCAAAGGCTATATGCTATTCTTAAAATTAAGGAATGGCTATTTTACTATG # Right flank : AGAGAACTTAAATTTGTGATTTGGTGTGAGTTGCTTACTTCTTGGAGGAGAGGAGTAGAGTTTCATTAATTGAATTTTTCTAGGTACAATAAATTTGCAAACCTATTCTAGCCGTTGATATATAAGGCTTAGAATAGGTTTTTATCATGTGCTTATGAAAAAACAGAATCACTTGGAAAACTTTTTCTAAAACCTTGTAAAATCAATGGTTGTATGATATTCTTAAAAATAAGGAATAGCTATTTTGCTATGGTTGAACCTTAACATAGGATGTATTTAAATTCATCTGTTATATCTATACCTAGAATTTTTATAAAAGTTGAACCTTAACATAGGATGTATTTAAATTTGTGAATGTATAGGGAAAAATGACCAAATGTTAGTGTTGAACATTAACATAGGATGCATTTAAGCAGAGAACCCAAATCTATGATTTGGTGTGAATCGCTTACTCCTTAGAGAGTGGCATAAGGATTTTTATAAAACTAAACTATGCATTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 3 261903-261478 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWYN01000001.1 Clostridium botulinum strain ATCC 25763 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 261902 30 100.0 36 .............................. ATCTTCTTATAATTGAAATATTCTTATCTGCCATTT 261836 30 100.0 37 .............................. TAAATTACAACCCCGTCAGTTTCATTTAAAGGGTTAC 261769 30 100.0 36 .............................. AATTAAGAAAAAATAATATAGTTGCCAGGGAGTTAT 261703 30 100.0 35 .............................. ACGTGATGCAGATGCATATGAGATAGCATTAGCAG 261638 30 100.0 36 .............................. TCTTTAATTAAGTCAAACCCATTATTTAAATCATAA 261572 30 100.0 35 .............................. TATAGTTCATAAATATTATTTGTATCATATGTATC 261507 30 83.3 0 A.....C.T...................GC | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 97.6 36 GTTGAATAGTAACATGAGATGTATTTAAAT # Left flank : TAAAGGAGAAGATGTAGATGGGAAAAGGATTTAATTATAATTATGCTTTTGTTTTTTATGATGTTAATGAAAAAAGAGTAAACAGAGTATTTAAAGTTTGCAAAAAATATTTATCTCATTTCCAAAAATCTGTATTTAGAGGAGAAATAACACCAGCAAACTTAATATTATTAAAAAGGGACTTAAATAAAGAAATAGATGAATGTGAAGATTTTATATGTATTATAAAGCTAATGAATAATAATGTATACGGAGAAGAAATATTAGGGAATAAAGCAATGACAACAGGAGAAGATTTAATATTATAAAAAAATGGAATCAATTTTTCCAACCAATTTTAATTTTAAAACCTATCTTAGGCATTAAAATATAAGGCTTAAGATAGGTTTTTATTATGACTTTATGAAAAGTGGGAATTGCCTGGAAAATTTTCTGTAAAAGCTTGTAAAATCAATACTTCTATGGTATTCTTGGTTTTAAGGAATGGCTATTTCCCTATG # Right flank : AGAGAACCCAAATCTGTGATTTGGCGTGAATCGCTTACTCCTTAGAGGCAACGAGAAGGAGTTTCATAAATTGAATTTTTCCAGGCGTAACAAATTTACAAACTTATTCTAGCCATTGATATATAAGGCTTAGGATAGGTTTTTGTTTTATATTTATAAAAAAGTAAAATCACTTGGAAAACTTTCTTTAAAACCTTGTAAAATCAAAGGCTATATGCTATTCTTAAAATTAAGGAATGGCTATTTTACTATGGTTGAACAGTAACATAAGATGTATTTAAATTTTTTTATAAGTTGTGGTGGTACATTAAAAGCTATAGTTGAACAGTAACATAAGATGTATTTAAATATGATTATCACTAAGGAGAGTGAAAAATGAAAGTTGGTTGAACAGTAACATAAGATGTATTTAAATTTGTCAGTAATATATACAGTCTTGTCCCATGCAGGGTTGAACAGTAACATAAGATGTATTTAAATGTAATAATATATTTTTTTAA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAATAGTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 4 272259-271440 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWYN01000001.1 Clostridium botulinum strain ATCC 25763 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 272258 30 100.0 36 .............................. GCCAATTGTGAAGCTGTATCCTCTTTGAATTTATTA 272192 30 100.0 36 .............................. CAAGCTAATTTTTGCAAACATTCTTTACAAATTGGA 272126 30 100.0 34 .............................. AGTCGTGCCAGTTCCTTAGAAACTTTGTTTTGAC 272062 30 100.0 36 .............................. GTAAAACCAACCCCAACACCTTGGGCCATGTATTTA 271996 30 100.0 36 .............................. CGATTTTTTGTTTTTATGCCAAAAATTCAGTGGAAT 271930 30 100.0 36 .............................. TTAAGATTTACTTTGTTTCTTCTATTAACGAAAACT 271864 30 100.0 35 .............................. TAAAATTTTTCTTCTTGATTAATCTTTTCTCCATC 271799 30 100.0 36 .............................. CCTTTAGTCACCTTTGGAATTATGTTGTTAGCAAAC 271733 30 100.0 37 .............................. TTGTTTATTGTTGAGTATCCGGTGCTAGTTTGCTTAG 271666 30 100.0 36 .............................. AACAATATCAAATATCTATATTTTAAAATATCCCAC 271600 30 100.0 36 .............................. CCAACTATTATTACCTCTTTAACTTGTAATCTTTTT 271534 30 93.3 35 ...............AG............. TCTACTTTTCCTTTAAACCCTAAATCTAAAGTACC 271469 30 96.7 0 .............................C | ========== ====== ====== ====== ============================== ===================================== ================== 13 30 99.2 36 ATTGAACATTAACATGAGATGTATTTAAAT # Left flank : ATTTATAAGTTATGAGGGGGTTTAATATGACATTACCTAAAATAACCCAAGAGAATGTGAACATATTTATTCCACTTAAGGCATCAAAAATATCATATAGATTTGCTAAGGAACATCATATATCTCAAAAGCAAGCTTTATTGGAGTCCTATAATTCAAAAACCGATGAAGCTTTGGAAAGAGAATAAACTAAATTATGGTATGAAGGTATCAATTATTTATATGAAGAATTAGAAGAAGAGAAAGATTTAAAAAAGTAACGAAATTTTTTACACCTAAATCTATCATATTTAATATACTACACCTAATTATGCGTAAAATATTTTTCCAACCAATTTCAATTTTAAAACCTATCTTAGGCATTGAAATATAAGGCTTAAGATAGATTTTTGTTATGTATTTATGAAAAGTGGGAAACGGCTGGAAAATTTTCTGCAAAACCTTGTAAAATCAATAGGTATATGATATTCTTTAAAATAAGGAATGGCTATTTTGCTATG # Right flank : TTAAATGAGTATGAAAAATTAAGTATAATTTAACCACAACATATGATGTAAAATCATTATAAAGATTATAATCTTTATAATGATTTTTTAATATTAAAAAAAATAATATATAATATTATAATCACATGGAGAATGTTGATTAAATATAAATAATGTGGTAATATAGAATAAAAATTTAGAATATTGTTAATATTCAATAAAAATACAATTGAAGACTGGAGGTGAAATAATGGAAGTATATGAATTAACACTAAAAATATTTCTCCTCAAAGATTTAACAGTGGACAAGTCTTATGAAAAATTAACAGAATTAATTGACAAATCTTTATGTAAAGATGATGAATTATTAGCTTTACATAATGAAAATAAGTATAAATACTATACTTTTTCATTACCTTATAAATTGGAAAAAGACAAAGTATATAAAGCTGGAAATATATATTCAGTAAAAATAAGAACTATTGATGAGAAAATATTAAAGAATTTCAAAACTCAGCTAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 5 273522-273027 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWYN01000001.1 Clostridium botulinum strain ATCC 25763 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 273521 30 100.0 36 .............................. TCATATAAATATTCTCTTTTTAAATCTGTACTAAGT 273455 30 100.0 34 .............................. CTCTTTCACCTATTGGTGTTTGACCATTTTTCTT 273391 30 100.0 37 .............................. AAAGTATTTTTAACTGTATTACCTAAAATGTTATTTA 273324 30 100.0 36 .............................. CAATATTTGCATTTACATTTTTTACATTCTTCTTTA 273258 30 100.0 36 .............................. TCCTCAAATAAGAAAGTGGTACCAAGGCTTTAATAT 273192 30 100.0 34 .............................. TATTTTTCTTTAAAAGATTTATGCATTATTCTAT 273128 30 96.7 38 A............................. TCTATAGAAGAACCAGCAGATTTGGCAATAGGTGTTAA 273060 30 90.0 0 ......T........G......G....... | T,GA,G [273030,273033,273039] ========== ====== ====== ====== ============================== ====================================== ================== 8 30 98.3 36 GTTGAACAGTAACATAAGATGTATTTAAAT # Left flank : TATTTTGAATTTATTATTGTTGACTAAAGGAATAGTAAATTATTTCAACAGAGCAACAGGATAATCTTTTTAACAAATACCTATACAAAGTATTGTTCTATGGAAATGCATATGAAAACTATTATTGCATAATTTGGTGGGGAAGAAAATAATTATAAATTGATAGAAGAAAGAGAAGCAATGTATCAATTAGAAACCTTAAAGAGGGATAAATATTACATGAAGTTAACAGATGATATTTAAAAAAGTTCTTGTTTAGGTATATAAGCAATTTTCACTTTAAGCATAATAAGCTCTACTTGTTTTTTAAATATTAATTTGAATTTTTCCAAGTGAATTTAATTTTAAAATCTATTCTAGCTATTGACATTGAAGGCTTATAGTAGGTTTTTATTATGAATTTTTAAAAAACAAAATCACTTGGAAAACTTTCTTTAAAACCTTGTAAAATCAATGCCTATATGCTATTCTTAAAATTAAGGAATGGCTATTTTCCTATG # Right flank : ATTGTAGACACAGAAAGCTGATCACATTACAGTATAAATAAAAGAAGGATGTGTTAGAAATGGTAAGAGGTCAAAAACAATATACGGAGGAATTAGAAAATAAATAATACAAAAATTAAATGTTTAATAGTTTTTATTCTATGGAAAGAGATGGATTCTATAAAAAGATAGATTGTATGTTTTTAGGATTAGAGAATTAAGTGAAGAATTTATATAAATTAAATGATCAAATTTCTTTTCATACAAGAAAAGCTTTAACCTATTTGAAATTTATAAGTTATGAGGGGGTTTAATATGACATTACCTAAAATAACCCAAGAGAATGTGAACATATTTATTCCACTTAAGGCATCAAAAATATCATATAGATTTGCTAAGGAACATCATATATCTCAAAAGCAAGCTTTATTGGAGTCCTATAATTCAAAAACCGATGAAGCTTTGGAAAGAGAATAAACTAAATTATGGTATGAAGGTATCAATTATTTATATGAAGAATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 6 284565-284273 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWYN01000001.1 Clostridium botulinum strain ATCC 25763 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 284564 30 100.0 35 .............................. TGTTTCGGAGATTGGCTTCTATAAAACTTATCTAC 284499 30 100.0 36 .............................. GGGATTTCCTCATTAAAACATCTTCATTTGGAAGGT 284433 30 100.0 37 .............................. TTGCCTAGATTATTTAACATTGTGCTTGAAGAAAATT 284366 30 96.7 35 ........A..................... GTGGTAGTAAGTACATTACTCTTTGAGAAAAAATC 284301 29 90.0 0 ........T......A.........-.... | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 97.3 36 GTTGAACAGTAACATGAGATGTATTTAAAT # Left flank : CTTAGAAGAAGAAGCTAATAAATTGAACAATAACATAAGATGTATTTAAACATAAATAAGTACTTGGGTTTATCTTCTTTTTTTGTAATTGAACAATAACATAAGATGTATTTAAACTGATGTGGAAGAACTTTAATCCTTTGGACGAATTCATTGAACAATAACATAAGATGTATTTAAATGAAGAAACTATAAAAACATTAAGCATTATAAAAGCGTTGAACAATAACATGAGATAGATTTAAGTAGAGGAACCAAATTTGTTATTTGACGTAAATTGCTCACTTTTTGGAGAGTATGGGAAGGTGTTTCATTAATTGAATTTTTCCAGGCACAATAAATTTTAAAACCTATTTTAGTTATTGAGATATAAAGCGTAGGATAGGTTTTTACTATGTATTTATGTAAAACCAAAATCGCTTGGAAAACTTTCTTTAAAACCTTGTAAAATCAGTGTTTATATGATATTCTTGAAATTAAGAAATGGCTATTTTACTATG # Right flank : TGGGATATGATTTTTACATTAATTAAATAATAATCGTAGTTTATTATAAATAGTATGGAGGTAGATTTTGAAACTTAAAGTAGTATTTTTAATTAGTTTTATTATGTTTATTCTTGGTATATACTTTTCCAATAAGTCTAATTTTATGATTTTAATTGGAATATTAGGTGGAGGAATAATGGGATGTGTATCAGCATTTGTAGGGTATTCTAGAACAAATGCTATTAAAGATAAAGAGGCTAGTTCATAAAAGAATTAATTTTTTATTATCTCATGGATTAAGTATGTGTTAAAGTTTTCAATATTAACATAAGAATTAAAAATTAATATTATATATGATAAAAATTACTAGAAGTCTTAGAAAAATCTAAGGCTTTTATTTTATGCAAAGATTTAGAATGGAATATGATAGGTAATTAATTTATTAATAAAAATAATAATATTTTTAAAATATAAGTAAAATAATTAGTTATATTAACTAAAAGGTGTATGGTATAATA # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 7 285696-284818 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWYN01000001.1 Clostridium botulinum strain ATCC 25763 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 285695 29 96.6 37 ............................T ATTTTATGGAGGTTATCAAAAGTGAGTTGGGAGGACG 285629 29 100.0 36 ............................. AGGTATAGAAAAAATAAAGAAAACAACAGAGGAAAG 285564 29 100.0 37 ............................. TTAAACAGTTTTTTAGCCTCTTTGACTGTGATTGTAG 285498 29 100.0 36 ............................. AAAAATTTTAAATATGATGATTCTTCATCTTGTATG 285433 29 100.0 37 ............................. GATATTTCTTTTATAGATTTAGAAAAAACTTTAGCTG 285367 29 100.0 37 ............................. TTGTCTATTAGATGTATGTATTAAGTGATACATATCG 285301 29 100.0 35 ............................. AAGTTAAAGTGACACAAAAAACCTGTGATGAGGGG 285237 29 100.0 37 ............................. TCCTTAGAAAGTTCACACACATAACTTGTATACCATA 285171 29 100.0 36 ............................. GAAAGAACTAGAGCTAGTATTTTATATGAATTATCA 285106 29 100.0 35 ............................. AGAATACAGTCATCTTAGAAGAAGAAGCTAATAAA 285042 29 100.0 37 ............................. ATAAATAAGTACTTGGGTTTATCTTCTTTTTTTGTAA 284976 29 100.0 36 ............................. TGATGTGGAAGAACTTTAATCCTTTGGACGAATTCA 284911 29 96.6 36 ............................T GAAGAAACTATAAAAACATTAAGCATTATAAAAGCG 284846 29 82.8 0 ..............G....AG......GT | ========== ====== ====== ====== ============================= ===================================== ================== 14 29 98.3 36 TTGAACAATAACATAAGATGTATTTAAAC # Left flank : ATAACTAGTTTAGAAATAAAAAGATTATGTTTTAAAATTAATTTAACAATATAAATTACAACAAAACTTTTTATGGTTAATTCTAGCATATCCAATACCACCCCCTATTTATAAGTGAAAGACTCACCAATATCCTAGGAGGATAAAATATTCAAAACCCCCGTAGCCATCCACTACGGAATTACTATCCTAACTTGGATATTATATCATAATTATCTATACTAAAAACAGAGGAATTAAATGGTAAATAACATTTTAGTTTAGAATACTACGTTTATTTTAGGATAAAAATAACAAATAATTATATAGAATACGCTAATATTTTTCCAACCAACTTTAGCTTACAAACCTATATTAGCTCTTGAAATATAAAGCTTAAGGTAGGCTTTTCTTATATATTTATAAAATATTATAATCGGTTGGAAAATTTTCTTTAAAACCTTGTAAAACCAATGTCTATGTGCTATTCTTAAAAATAAGGAATGGCTATTTTGCTATGG # Right flank : AGAGGAACCAAATTTGTTATTTGACGTAAATTGCTCACTTTTTGGAGAGTATGGGAAGGTGTTTCATTAATTGAATTTTTCCAGGCACAATAAATTTTAAAACCTATTTTAGTTATTGAGATATAAAGCGTAGGATAGGTTTTTACTATGTATTTATGTAAAACCAAAATCGCTTGGAAAACTTTCTTTAAAACCTTGTAAAATCAGTGTTTATATGATATTCTTGAAATTAAGAAATGGCTATTTTACTATGGTTGAACAGTAACATGAGATGTATTTAAATTGTTTCGGAGATTGGCTTCTATAAAACTTATCTACGTTGAACAGTAACATGAGATGTATTTAAATGGGATTTCCTCATTAAAACATCTTCATTTGGAAGGTGTTGAACAGTAACATGAGATGTATTTAAATTTGCCTAGATTATTTAACATTGTGCTTGAAGAAAATTGTTGAACAATAACATGAGATGTATTTAAATGTGGTAGTAAGTACATTAC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGAACAATAACATAAGATGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 8 287165-286608 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWYN01000001.1 Clostridium botulinum strain ATCC 25763 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 287164 30 100.0 35 .............................. TCGAATATTAAGCACGCACTACGCTTACCATCTTT 287099 30 100.0 36 .............................. ACGACTATTCCTCTTGAGGGAAGTAGGTATAAGCAT 287033 30 100.0 35 .............................. AAAACTTATACGCCCTAAAAGAACCATTACTTTAA 286968 30 100.0 35 .............................. GAGGTTCAAATCCTTTTATCTCCAAAGGAATTCCG 286903 30 100.0 36 .............................. TTGGTACAATTATAAAGAGTTGAAGATAAACTATGA 286837 30 100.0 37 .............................. TAAATTTTAATAATATTTCCTTTTGAATCTCTTATAG 286770 30 100.0 35 .............................. TAAGGTTACAGAAGCTAATGATAGAATGGAATTAA 286705 30 100.0 38 .............................. TAAATTAGGCTATGAAATAAAACAAACAGTGGGAGAGT 286637 30 90.0 0 .......................C.G...A | ========== ====== ====== ====== ============================== ====================================== ================== 9 30 98.9 36 ATTGAACATTAACATGAGATGTATTTAAAT # Left flank : TATTTACAAATTAAAATTATTTATGCAATGGGGGAAAAAATGATTTTAACCATTGATTGTTTTAGATATATGTATTTTTTGTCACAGTAAAAAAACTAGAATACCTGGTACAGAGGATATGGATAAAGAATATAGAAATCCATGGCATCATATAAAAGGAGCTGGTATTGGAACTATAATAGGTGCTGTAGTAGCATTATTATCTGGAGGAATGCTTCATTTCATATCAATAATATAGTATTTAAGCAGGGAACCCAAATCTTAGATTTGGTGTAAGTCGCTTACTCCTTGGAGAGTAGGATAAAGAGTTTCATAAATTGAATTTTTCCAGGCGTAACAAATTTTAAAACCTATTCTAGCTATTGGTATATAAGGCTTAGAATAGGCTTGTTTTATGTATTTATTAAAAAACGTAATCACTTGGAAAACTTTCTATAGAACCTTGTAAAATCAATGGCTATATGCTATTCTTAAAAATAAGGAATGGCTATTTTGCTATG # Right flank : AAACAAATAACGATGAAAAGATAACAAATAATAATTAAGGTGGTTTTTCATTGACAAGGTTTTTCAACATTTTGAAATTGAAAAACTAACAGCAAATATTATACAGAAAACTATAGAGAATCAATTATAAGCAGTAAAATCTAATTTTATAGTTAGTTTTTTTATAGAATTTTATAGTTAAAAAATTAAACATATAAATATGTGTTTATTTTTTATATAAATTTGATATAATATAAATAAGAAAAGCTTAGTGTTGGAGCACTAAGCAATCCTTAGAACATTTATTTTGTTTTAGGGCTATTGGATGAATTTAATAATTAAATTTGAGAGATTAAAGCACTATTCTTGGTCGGATGGGTGCTTTTTCTCTTTGCCATTAAGTTCTATGTGAATACCAAGAAATTTAATCTTGATAACTAGTTTAGAAATAAAAAGATTATGTTTTAAAATTAATTTAACAATATAAATTACAACAAAACTTTTTATGGTTAATTCTAGCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 9 293084-292544 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWYN01000001.1 Clostridium botulinum strain ATCC 25763 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================================================================================================== ================== 293083 30 90.0 36 .C.............AG............. GATATTATTGTTACATTCTTAAAAGGTTCATCTTTT 293017 30 100.0 35 .............................. TAATTAACTGTTTTATCTGGTGTATATGTGTTCCC 292952 30 100.0 37 .............................. TGGCAAAATGTTTTGAGAGTTGCCTGTCCTGGAATAA 292885 30 100.0 36 .............................. ATATCTATATAATTAAAATCAGCAAATTCCTTTCTC 292819 30 90.0 36 .......AG......A.............. GAATCTATAGTAGTTTCATTTGTTAAACCAGACGAA 292753 30 90.0 115 .......A....................GC AGAGAACCCAAATCTACGATTTGGTGTGAGTCGCTTACTCATTCGAGGTGAGGAGAATGAGTTTCATAAAACAATCAAAGCTTTATTATTTTAAAATTAAATATGCTTTTAAATC 292608 30 86.7 3 T................A........T.C. ATG CG [292586] Deletion [292576] 292573 30 80.0 0 .......AA......A..........G.GC | ========== ====== ====== ====== ============================== =================================================================================================================== ================== 8 30 92.1 43 GTTGAACCTTAACATGAGATGTATTTAAAT # Left flank : ACAATAACATAGGATGTATTTAAATCTTTTCCCGGAAAGAAAAATCCAAGACATAGAATTGTTGAACATCAACATAAGATGTATTTAAATCCGAGTACTGGAACTTTATCTTCTAATTTAATATGTTGAACATTAACATAAGATGTATTTAAATCAAACAATAATTCCATCAATTACATTATTATTTTTTGTTGAACAATAACATAAGATGTATTTAAGCAGGAAACCCAAATCTTTGATTTGGCATGAGTCGCTTACTCCTTCGAGAATGGGAGAAGGAGTTTCATTAATGAGCATAGTATATATTTTATATATAATTAAATTTCCCCAAGCGAATTCAAATTTAAAACCTATTCTAGCCATTGATATATAAGGATTAGGATAGGTTTTTATTATGTATTTATGAAAAATAAGAATCGGTTGAGAAAATTTCTATAAAACCTTGTAAAATCAATGCGTATATGTTATTCTTGAAAATAAGGAATGGCTATTTTACTATG # Right flank : ATAGAACCCCAATCTGTGATTTAGGGTGAATCTCTTACTCATTGAGATATGGAGAATCAGTTTCATAAAACAAGTGAATCTGAGTAGATTTTTATTGACTAAAGTATTTTTGAAATTTAGTTTTAAGTTTAGGTTGTATTTTAGAGTGCTGTTGGAATTTTAAACCCCATTAAAAGAAGTTAAATATTTTTCTTTTAATGGGGGCTATATAAATTGCTAGATACTAATTATTTAAAAATTTATTTAATGAATCATTGTCTTTAAATAAGTTTTCTAAGTTCCCATATTTTTGTTCTAAATTTTTTCTATCATATTTATAGGATTCTTCTCCTATATTGGCTACATTAAATTTAATAATTTCAGCGTTTGGTATAAGAGATAATAATACCACTGAATTCTTTTCTAAAAGCTTGTTAGCTTTTTTGTCACTCCAAAATTTATTATAATTTTCTTCACCTAAATTTTCATTTGCTTTATAGTTAACAGTTATTTCATATGGC # Questionable array : NO Score: 4.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:-1.53, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [15-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 10 294112-293364 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWYN01000001.1 Clostridium botulinum strain ATCC 25763 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 294111 30 100.0 36 .............................. AAAAAAAAGTAAAAAAAATGAAGAGGAAGAGTATTT 294045 30 100.0 35 .............................. AAAATTAAGTAGTAGGATGGAAAGATTCCTAGGAG 293980 30 100.0 35 .............................. GGCAAAACATTTAATGCTTGGGCATAAAATTCTTT 293915 30 100.0 34 .............................. TATCAGTTAACATCTCAATCACTCCCTTGGTTTT 293851 30 100.0 36 .............................. AGAAATAGTAAATGGTAATCAATTAGATAATAAGAG 293785 30 100.0 36 .............................. AAAATTATATTCATGTAGTTAACATGGTGAATGATA 293719 30 100.0 36 .............................. AATTTCACATGAGCTATTAAAGGTTGATAATAAGCT 293653 30 96.7 35 .................G............ ATCTCAGAAGGTGTAAAATTATTACTTTCTGATAA 293588 30 96.7 35 .................G............ CTTTTCCCGGAAAGAAAAATCCAAGACATAGAATT 293523 30 86.7 34 ........TC......AG............ CCGAGTACTGGAACTTTATCTTCTAATTTAATAT 293459 30 90.0 36 ........T.......AG............ CAAACAATAATTCCATCAATTACATTATTATTTTTT 293393 30 86.7 0 ................AG..........GC | ========== ====== ====== ====== ============================== ==================================== ================== 12 30 96.4 35 GTTGAACAATAACATAGAATGTATTTAAAT # Left flank : TCAGCAAGAAAACAGATGAAGGATTTGTTTTAAATACAAATGGAGAAGAATCAATTATTAATGCTGATAGTGCTGTTGTAGCTATTGGATATTTATCTGAAAAAGACTTATATAGTGAAGTTAGATTTGATATTCCAAATGCAAGACTAATTGGAGATGCTAATAAAGTTCAAAACATTATGTATGCTATTTGGAGTGCATATGAAGTAGCTAAAAATATTTAAATAAACTTTTGCAAAAAACTAGAATGGGTTTATATCCATATCTAGTTTTTTGTTTTTTACTTAAATTCTATAAGTATATGAGTGTTTGTCAGGCTATATTTTCCCAAACGAATTCAAATTTAAAGCTTATTCTAAGCATTGATATATAAGGATTAGAATAGGTTTTTATTATGAATTTTTAAAAAAGTAAAATCACTTGGAAAAATTTCTGTGAAATCTTGTAAGATCAATGGTTATATGATATTCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : AGGAAACCCAAATCTTTGATTTGGCATGAGTCGCTTACTCCTTCGAGAATGGGAGAAGGAGTTTCATTAATGAGCATAGTATATATTTTATATATAATTAAATTTCCCCAAGCGAATTCAAATTTAAAACCTATTCTAGCCATTGATATATAAGGATTAGGATAGGTTTTTATTATGTATTTATGAAAAATAAGAATCGGTTGAGAAAATTTCTATAAAACCTTGTAAAATCAATGCGTATATGTTATTCTTGAAAATAAGGAATGGCTATTTTACTATGGCTGAACCTTAACATAGGATGTATTTAAATGATATTATTGTTACATTCTTAAAAGGTTCATCTTTTGTTGAACCTTAACATGAGATGTATTTAAATTAATTAACTGTTTTATCTGGTGTATATGTGTTCCCGTTGAACCTTAACATGAGATGTATTTAAATTGGCAAAATGTTTTGAGAGTTGCCTGTCCTGGAATAAGTTGAACCTTAACATGAGATGT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATAGAATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 11 301687-301327 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWYN01000001.1 Clostridium botulinum strain ATCC 25763 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 301686 30 100.0 36 .............................. AATTTTAATTGGCTATCAAATACTTTTTTAGAACTC 301620 30 100.0 36 .............................. GGCATCATTAAATTATAATATTTAATAAATTCTTCT 301554 30 100.0 36 .............................. ACGTTATTTTTACCTTCATAAGCTTTTAATAATTTT 301488 30 100.0 36 .............................. TTTGTAAACCCTTCTTCCTCTGTTGTTATTATTAAA 301422 30 100.0 36 .............................. CTATTTCTAGCCATTCTCTCTATATCAAATGTATCT 301356 30 96.7 0 ......T....................... | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 99.5 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : AAATATGTTCTTGGTTAAACCGTAAAGATGAACTTGTAGCAGCAGTAGCTATAGGATATGTAAATCAACCCCCTTATCCACGTCCACGTAAACCGTGGAGAGAAGTTACAGAATGGATGAGTTAATACATTTAACATCAAACAATAAAAACGGAGAATTATTTTAAATACCGTATTATTTATAATTGAGTTCCATAGTGTTTTTACACCGCAATACAATTATATTGCAAAGTTAGATGTATTTAAGTAGTAAATATAAATCTGAGATTTAGTGTGAGGTGCTTACTCATTTGAGGAAGCGAGAAGGCGTTCTACTAACTGAATTTTTCCAGCCAAAATAAATTTTAAAACCTATTTTGAGCGTTGACACATAAGGCTTATGGTAGATTTTTATTTTATATTTGTAAAAAAGCAAAACTACTTGGAAAACTTTCTTTGAAATCTTGTAAAATCAATGGTTATATGCTATTCTTAAAAATCAGGAATGGCTATTTTACTATG # Right flank : ATTATATCTCCTCTTGTAGCGGGAGTTCCTATACCTGTTGAACATTTAAGTTCCTTTTAGGTGCAATTCTTTTTGGGTTATTGACTTGTTAGTCTAAAGCTACACCATAAGAAAGTTCATTAAACACATGTGGAAGAACAAGTAATAGATACAGCACTTGCTATTGATATGGTGAATTGTATTACAAATAACGAAGGTTTTATCTAAAACTGTTCATATGGCTGGATTTAAGAAATATAATAGTGTTCTAAGTTGTATCATAACCTAAGTAAATTATAAGAATATATGGTTATATTTATTTTAAGACTATTGTATTAATATGATTCATCCAGATTTAATTGTGAGAAATTTCATTATAAACTTAATAGGGAAGTCTTAGATTTTTTATTGCATGAGATTATACGTAAAATATTAATTTTCACTATAACTTAACAAATGATTGATACAATTTTAAAAAAATCAGGACTTACAATGATAAAGTAGGTCCTGATTTTTATTAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //