Array 1 1660-1332 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJJR010000019.1 Megamonas hypermegale strain An809 An809_NODE_19_length_49157_cov_89.0833, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 1659 36 100.0 41 .................................... TCTATCACCTCCCATCCGTCATATGCGAATATGACTTTATT 1582 36 100.0 34 .................................... AATTTGTCATAATTAAAACCTCTTTCGTTATATA 1512 36 100.0 36 .................................... ACATCATATTTTTGACCACAGAATGGGCGATTTCTA 1440 36 100.0 37 .................................... TTTCCATAACACATATCTCCTTATTAATTAAATTATA 1367 36 97.2 0 ...................................C | ========== ====== ====== ====== ==================================== ========================================= ================== 5 36 99.4 37 GTTTGAAACTAGCCCCGTATATAGGGGACGGAAACT # Left flank : TTTCTTATTGACAAAAACCACAAAATCTTTTATTTTAAGTTTACAAGCCTTACATTATATATATCTTGCTCAAAAATTTTATTTTGGTATCTCTTTATAAAAATTTTTCACCATAAATATTTTTTATCAATAATCATATTTATTATTAACGCAAAATTTCAGTTGAAAATTCTGATAATCTCGATCATCATGCCCTCAGAACAAAATTTTGTAAGTTTTTACATTGCAAAAACCTTCAAAATAGGTTATAATAGCTTTAGTTAATTGAGTTTTTCTAAAAACAGCTCGTAAGAAATTCATTAATATTTATACACGACTGTTCCAAAAAACAGCAAAAAATGCCCTAAAATGGCAAAAAAACGGCTTCTCAGCCGCACCGCGCCACTACTGGGCTCGTGGCACTTTTTGAAGTGTTTAACAGTGCTCAATCGACCTCAAACCTGTTCTCAGCCGCAAACTGCATTTTCAGCCCAATAACGACGCGGGTTTCAGGGCACAGG # Right flank : AATACAAAAGAGCAAAAGTATAACACTTTTGCTCTTTTTCTTTTATTATTCTTTAAAAAAAATGCTGAGATAAAAGATTTTCCTTCTACCTCAGCATTTTTATTTTTATCTATTTATTAATCTCTAAATATCCCATACTATCGAATATCCCATTATTGTTCCTAAATTTACTACTGCTTCGTATCCATTATATAAATCTATCACATTACTAACTATCTGTTTCTCTGCACTCATTACTTCACCATTTACACATTTATCTACCATACTCATTTTTATTCCTCCTCAAAAATCTCATCTAATACTGTATTAACCACAAGTCCTATAACTAAATCTCCAATAATTCCAAACATATGCTATTTCTCCTTTTCATTTTATCTTTACACTATATATATCCACTTTGTTTTTCTCTTTTTGGCATTTCACTACTTAAATTTTTTAATAAACTATAATTTTAATTGGAATTAACGGTATCATCTATACCCCTCCTTTTTTATCTTTAC # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAAACTAGCCCCGTATATAGGGGACGGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.60,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 14767-15240 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJJR010000035.1 Megamonas hypermegale strain An809 An809_NODE_35_length_15358_cov_71.1652, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 14767 35 100.0 39 ................................... TGAATGCAACTGGGGATCAAAAGAAGAAAATGGGTTTGT 14841 35 100.0 42 ................................... AAGATCCAACTTCGATGACGTAATAGAACATCTTCCTAGATA 14918 35 100.0 37 ................................... ATTATGTCCAAAAATTTAGGTTTAATAGTAGCTGCCG 14990 35 100.0 40 ................................... TCGAAGTTAATAATGATAAGGAATTCATAGAAACATTAGA 15065 35 100.0 35 ................................... TATCTGTAATTTTAAGTGCTGCTGGAACTAAAGTT 15135 35 100.0 36 ................................... TTGTATCTCAGATGAGAAAAATACGTGACGGTCATT 15206 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================== ================== 7 35 100.0 38 GTTTCCGTCCCCTATATACGGGGCTAGTTTCAAAC # Left flank : ATCCATTGGATTAGGAAGCATAAAATTAACAGGAAAATTTTATTTTAGAGATGATACTTATTACAAGAAACTTTTTGCTACGGATAAAAAGGATTTTGCTAAATGTTTAATAGAAGTAGATAAACAAAAATTCATTGAAGAGTTTAAAACATATCTAAAAAGTAAATTATCGCCAGAGTCCTTAGTATCATATCAACAACGAATAAATTCGCTAAAAGCTATTTTAAGTATAAAATATATGATGAGTGCGAACAGTGAAAAATGGAATAGTATGACTCGATATATGGAAATAGGAAATAAAGAAGATAGAAATATAGTTACAAGTAGAACACCATTGCCTACTATCGAAGAAGTCATTCAAGGATTAAAATAAGTATTAGATGAGAAAAGAGCTAAGTTTATAAACTTAGCTCTTTTTTACATTAAGCGGTATATTGAATGAAATAAATAATATTATAACTAAAAATAAAAGCTCTAACCAAAAGGCTAGAGCTTTTATA # Right flank : CCTGTGCCCTGGAACCCGCGTCGTTATTGGGCTGAAAATGCAGTTTGCGGCTGAGAACAGGTTTGAGGTCGATTGAGCATTGTTAAACACTTTAAAAAGTGCCACGAGCCCAGTAGTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTCCCCTATATACGGGGCTAGTTTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.60,-7.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 955-119 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJJR010000043.1 Megamonas hypermegale strain An809 An809_NODE_43_length_8341_cov_91.1012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 954 35 100.0 37 ................................... CTAAAAAAGATAAATATAATGTAAATGATATTTATTT 882 35 100.0 34 ................................... GTTATATCTCAAAATGTTATCTATTCTCACCAAT 813 35 100.0 39 ................................... GAAAGTTTCGATCGTGATACACTTCTAGATATCTGTAAA 739 35 100.0 40 ................................... TTACATTATAAGCAAAAGAAAAGGAGTTTTTAATTATGAA 664 35 100.0 39 ................................... CAGTTATTCTTATTGTTTTATCTTTAGTGTGCTTAGCAC 590 35 100.0 36 ................................... GCTATTACACATATGGTTCGATGATGGTAATATGCG 519 35 100.0 39 ................................... ATATGAATTATACAAAGAAATTACAGAACGTTTAGAAAA 445 35 100.0 37 ................................... TTAAGCAGAAAGGTATTTATGATGTATACATCAGATT 373 35 100.0 38 ................................... TATGTAGAAGGAGGTATATTCTGTAAAAAGAATATATA 300 35 100.0 38 ................................... ACCTGGAAGATCAGATCCCAAAATATATACTCAAGATG 227 35 100.0 39 ................................... TTCTTAGCATATGTAGATTCAGCAGTTGCAGTATTTACA 153 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 12 35 100.0 38 GTTTCCGTCCCCTATATACGGGGCTAGTTTCAAAC # Left flank : AGAGAATCTGTTTTGGGGTCAATGAAATTTTTGCATTTGTGTATCATTTTATCATATTGTGTTTTTGTTAGAAACCCTTCAAAAGCTGATTTTTGTACACGAGTACCAAAACTCTCTAAACAGTGAACCATTTTAGTGCGCCGTTTATCATCGACAATATCATAGATTACCAGATGTTGACATCTAAGAGATAGGAATATTTTTAGTAAGACATTCTGTTATGAGTGAAGATGATATTTGGGTTGTATTTGTAACAGTGATATTTTCTACCAATTCTAATGGAACTTCTGTGATAGTAGTTTCTTCTTTATCAATAAGCAATTTTCCGCCACGTTTATGTAGGTAAGTGCCATTTTCTGTAATATAAATAGAAGCCATAACAAAAATCCTTTCTAATCTAATATTTATATATATTATAGAAAGAAAATACTTATTAAGCAAATTTTATATAAATTGAAAAGAGATAGCCAATATAATTGTGTATTGACTATCTCTTTTTA # Right flank : CCCTGTGCCCTGGAACCCGCGTCGTTATTGGGCTGAAAATGTAGTTTGCGGCTGAGAACAGGTTTGAGGTCGATTGAGCACTGTTAAACACTTCAAAAAGTGCCACGAGCCCAGTAGTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTCCCCTATATACGGGGCTAGTTTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.50,-7.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 5014-6576 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJJR010000046.1 Megamonas hypermegale strain An809 An809_NODE_46_length_6719_cov_89.603, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 5014 30 100.0 38 .............................. TGTATTATTTTTTCCGTAGCCACACCCGCGCGCCCAGG 5082 30 100.0 36 .............................. GCTGGGAGATGGTGGCGGAGCTGATTATATAGTTAT 5148 30 100.0 36 .............................. TTTTACTTACCTTCTTTTATTCCAAATATTAATTGC 5214 30 100.0 37 .............................. AAACACCTGTAACAGCTCCCATTTGGTAGCTTTTTTC 5281 30 100.0 36 .............................. AATACTTATATTCATGGAGAGCCAGATGGATAATTA 5347 30 100.0 35 .............................. CGAACAAAGCGATTGCTGTAACGCAGGTTGCTTTA 5412 30 100.0 36 .............................. CAGGTGTTAAAGTTTTTATGTTGATTTTCGATATGT 5478 30 100.0 37 .............................. TTTCACCATTGTTAATGTGTATTATTTAGACTATAAG 5545 30 100.0 37 .............................. TTCGCAGCGTGATAAATTTCAATCCAATTCACGTACA 5612 30 100.0 38 .............................. GCGGGAACTTTTTTTGTGGCTGGTGGTGCGGGCATGAG 5680 30 100.0 35 .............................. CTATGGTGCGCGCCCCGTTTTTGGGGGTTGCACCA 5745 30 100.0 36 .............................. CTTATAAAAAATAATAACATTTTTTTGCCTGGTAGT 5811 30 100.0 38 .............................. ACCATTTGTAAACAAATGTATTGTATTAATATACAAAG 5879 30 100.0 37 .............................. TGTAGATGGTATTGCTTGGCATTATTACATTTTCCCC 5946 30 100.0 36 .............................. TAACGTTTGCACCCACAGGATTTTGTTTTTCCTGTT 6012 30 100.0 37 .............................. AGTACAAAATGTATGTATCAGATAACTTTTATACTTG 6079 30 100.0 36 .............................. GGTGGCTTTGAATTCGGCGAAACTTGCAACAGCGCA 6145 30 100.0 38 .............................. AAAATGCTTAGAAATGAAGGCAAAAGGCAAATTGCAAT 6213 30 100.0 38 .............................. AAGAAATGATAATTATGCAAGCCGTGTAGCACAGACAA 6281 30 100.0 37 .............................. TGGAAATGTTCATTCGTGGATGAACATACACTTGGCA 6348 30 100.0 36 .............................. CTCGTTTTGGCTATATTGACTCTTTAGACTTAGAAA 6414 30 100.0 38 .............................. TTCTTGGCACAAAGAAAAACGGCATAAAAAAATGGACG 6482 30 100.0 35 .............................. TCCTCAACCGTTTATAACTTTAACGGTGTTTTTGG 6547 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 24 30 100.0 37 GATTAACCTTAACAAGAGTTGTATTTGAAT # Left flank : AACTTATTAAACAATAATTTTTCTGCTGATGAATTACAACAATTATCCCGCGATATACAAACTGATTACATCATCATTTTTAACGGTGGTAAAATCAATTTTTATAATGCACAAGGTGAAGAAATTTCCGCTGATACAGATATGAATAAAATCGCTTTATACCATCAAACTAAAGATGTAAATATCGATATCACCCGTGAAATCGAAGTTCGCTTCACTGATTCTTATATCAATCGTATTATGACTAGCAATAATATATTTCAATCTTATATAGCTTGAAAACGATAAACTAAAAGAGCCTTTAAAGGCTCTTTTTTTATACATTTTACCAGCCATAAAATAAACCTCTTATGCTAAAACCCTTTAGTTATAAGCATTTATCACTCTTTTTTAATAAATATAAAAAGATAACCAACCACTTGGTAAAAATAGATAAAAACATTGATAAATAAGGCTTTTTAGGATATACTAGAAAAAAGAAATCCAATATTTACATGGGG # Right flank : GAAAAGCCATGCCCATATGTAAAGCCGTCATGAAAGTTGATGTCATGGCGGCTTTTTGTTTTATAAGATGAATTGTCAATCCAAGTGCGACACTTCTTTTAAAAATAAATTAAATGGATTATCCCAATTTAAACATTTTCTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACCTTAACAAGAGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 97597-91271 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJJR010000001.1 Megamonas hypermegale strain An809 An809_NODE_1_length_169275_cov_63.1231, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 97596 30 100.0 37 .............................. GTTAACCGTAAATTGTCCTGCTTGTGTTCCTTCCATT 97529 30 100.0 37 .............................. GGTACGGCTGTTTCTTCTATACTTGATACTATAGTAA 97462 30 100.0 36 .............................. TTATTTATTACTCCTTTTAGTGAAAACGCTTGCGAT 97396 30 100.0 36 .............................. CTCCTTTTTATTTATGTTAAAATTTTAACATAAATT 97330 30 100.0 36 .............................. TTGTTGTTTATCCTGCTGTTGAGTATTTTTTTGCAT 97264 30 100.0 34 .............................. TAAGCGTTGCAGATTTCTTTAGATACCCTATCAG 97200 30 100.0 37 .............................. CCAAAAATTTCACGGGCGTTTGTAGGAGCTGTTAAGA 97133 30 100.0 38 .............................. AGCGGTAGAAGCCCTACGCCTTGATTATAGCATAAAAA 97065 30 100.0 36 .............................. AGGCTAATTTTATAGAGATAAAAGAAATTGTAGTCA 96999 30 100.0 36 .............................. TCTCCAATGCAAGAAATATGAAGGTTTCCATATAGC 96933 30 100.0 36 .............................. TGTAAATTATAATGTAGATATAAATGGCTGTAATGC 96867 30 100.0 37 .............................. TGCGAAAAATTTTGACGGGGGATTATTCTTGGTTGAT 96800 30 100.0 36 .............................. TAATACAAACTCATGTTTTTCAAAATCAAATTGTAC 96734 30 100.0 35 .............................. TGGGTGCAGCTTTTTAGGCTGTGCCTTTTTTTGTG 96669 30 100.0 36 .............................. TAATGGCATTAAAGACGGTACAGAAATCGCAAAGAA 96603 30 100.0 36 .............................. TTCCTAAACGTGGATTTTTTAGCATCTGATTGCTGT 96537 30 100.0 36 .............................. TTGGATATTTGACTAAACATTTATATATATTTCCAA 96471 30 100.0 37 .............................. TTTGAGGTTGATTGCCTTCTCAAAAATTTTTCTGCGA 96404 30 100.0 36 .............................. CATGTATGCAATATTAGCCATATGTATCAGCTCCAT 96338 30 100.0 37 .............................. AAATTGCCAAAGAAGAAGGCAAGTATAAAGGTAGAGC 96271 30 100.0 35 .............................. AATGACAGTCTTACGAGTTCTCTCCGCAATGGGCA 96206 30 100.0 36 .............................. TTCTGGTGCATATAGAATAAATCCTGATGTTTTATT 96140 30 100.0 36 .............................. TTACCATTCCGCCTAAGTATCATCTAAAGTATCTCT 96074 30 100.0 35 .............................. TTTGCAATACTATTGCAATCAAATATACACGGAAA 96009 30 100.0 36 .............................. GTTACCTGCTCTTCGGTTGGGCAAGGCATTATCTTT 95943 30 100.0 36 .............................. AATTATTTTGCTTGTGTTGCTTCCACTTTCGGGGCT 95877 30 100.0 36 .............................. AGTATAGTAGAAAAGTTGCGACTCAACATCAAAACA 95811 30 100.0 36 .............................. CCCTTTGGATTGGAAATGTTAATATTGTAGTCATCG 95745 30 100.0 36 .............................. TTTATTGCGACGGGGGTTACTCTTGATTGATGAGTT 95679 30 100.0 37 .............................. GTCGTTCCGCAAAATCTGTTCCGCTATTCCAGCCCCC 95612 30 100.0 36 .............................. TGTTTAAACCCTCTATCCTTCAAAATCAACTGTAAA 95546 30 100.0 36 .............................. TTCCTAGTAAAGCAGTTACAAAAGCTTTAATTCCAA 95480 30 100.0 37 .............................. ATGGTCTTACTGGAACGGCTTTACTAGGAGCTAGGGT 95413 30 100.0 36 .............................. CCAGCATCTATAGATGCTGGTATGCCAGTAGTTTTT 95347 30 100.0 37 .............................. TTATCTGATGATGAAGCCATAGAGGTTTTAAAAACGC 95280 30 100.0 35 .............................. GCGATTGCAGATATTATCTATGAAGTAGCCGAAGG 95215 30 100.0 35 .............................. TTGGAGTACAGATAGTGAAGTTGCAGCTGTAATGG 95150 30 100.0 36 .............................. AAAGAATTTGGCGATAAAATTTTAAAACTAAATAAT 95084 30 100.0 38 .............................. TCGGAAACGTCTGGATTAAAATTGCTGATTGTTCTACT 95016 30 100.0 37 .............................. GTTCATTGGCAGAACTATAGTAGATACAGCTTGCAAA 94949 30 100.0 37 .............................. TCCAAAACTTCTTTGAAAGGTTTCCCTTTAGCAATCA 94882 30 100.0 36 .............................. GCAAAATTATTACTAACCGTTTCATCGAGTGCTGCA 94816 30 100.0 36 .............................. CTAAAATGGTATTTATATTTCTATCTGGCCCTTGTT 94750 30 100.0 36 .............................. TCATTATTTTTTAGTGCTGTTAATAAATCTTTTAAT 94684 30 100.0 37 .............................. TTCCAGAGTTTTACGATATTTGGGCTTGCCTTGCGCC 94617 30 100.0 37 .............................. TTTACAGAAACCCATCTTAAATTAGACACATGATTAT 94550 30 100.0 36 .............................. AAGTACAGTTTATTTTTTAAATGGTGATTGGCTTAA 94484 30 100.0 38 .............................. TTGAGATAATTAGCCTGACTTAACGTCAAAAATACTTC 94416 30 100.0 36 .............................. TTTTCTACTGAATTATATTCTGGTCGTGGGTCGTCT 94350 30 100.0 36 .............................. ACGGGTCCGTAAGCGTAACGGAAGATTGATAACGCC 94284 30 100.0 36 .............................. CTTTCTATATAAATATTTTTGAAATTTAATCCATTC 94218 30 100.0 36 .............................. TAAGTTGCTGTATAATCCGTATCTAAAATAAGCTCT 94152 30 100.0 37 .............................. TTTAATTCTTGTAATTCGCCATTGTATTTTATATCAC 94085 30 100.0 37 .............................. CACCTGTTTTAATAACGACACCAAAACCTACGCTTGA 94018 30 100.0 36 .............................. AGCTTGCTCATTTTGTTCGCCTTCTATCTGGTATAA 93952 30 100.0 36 .............................. CCTTAAATGATTTATTGCTGGCAACTTTAAAAAGAA 93886 30 100.0 36 .............................. GTCATGATTGCTGTTTTTAGTTCTGGCAGAAATTTT 93820 30 100.0 36 .............................. TATTTATATTTCGCAAGAAGATTTAAGGCTACTATT 93754 30 100.0 36 .............................. GTTTTTTAAACTCTTCCATAACGGTTAGAGAGTTAA 93688 30 100.0 35 .............................. AAAAGCTGCTCAAGAACGCCGTGGAGCATGTATGA 93623 30 100.0 36 .............................. TTCCCTTTTTGGTAATGCCAGCAACATAAATATATT 93557 30 100.0 36 .............................. TTCGGTTGGCTGAATGACCATTTCTATGAAGTTAAA 93491 30 100.0 37 .............................. AGCACATTCATCATCACACTTCTAATTTAGTGATAAC 93424 30 100.0 36 .............................. ATTTAATTTTATTCATCTAGCTTAATAATAAATATT 93358 30 100.0 36 .............................. TAATCTTTATCTACTAAATCTCTAGCCTTAGCATAT 93292 30 100.0 36 .............................. ACTAATATTGAAGCTGTTTTAACAACTGCATCATTT 93226 30 100.0 36 .............................. GGTATATTTACTATCTATTAGAAATCTTTTCAAGTC 93160 30 100.0 36 .............................. TGGAAAGCCAGATGGATAATTATAATGCTTTAGTTG 93094 30 100.0 37 .............................. AAGTTATATCACAGAAAATGAAGCACGTTGAGGTTCA 93027 30 100.0 35 .............................. ACTGCAACCAATTTATATTGGATTAATGCTAACTA 92962 30 100.0 36 .............................. TCTAAGGTTGGAACACGCTTCAACTGTGGCACATAT 92896 30 100.0 36 .............................. GTTAGAGCTAAAGGATAAGTAACTATTTTCTCCACA 92830 30 100.0 38 .............................. TTACCAAATAAAATGGCTTATAATATAGGATTTATAAT 92762 30 100.0 37 .............................. TCTATTTTTATCATCGTCCATATCTCTTAATACTTTT 92695 30 100.0 36 .............................. TAATCATGATATAGATAATGATTATACAGCAAGTAT 92629 30 100.0 37 .............................. TTTTGGCTAAAGTGCAATCATCTACGACTTGCCCTGT 92562 30 100.0 36 .............................. TAATTAAATTCAACTTTTTTCATTATCATCACCAAA 92496 30 100.0 37 .............................. GCTGTATTTTCTATAGCTAGATTAGATATCTTACTTA 92429 30 100.0 35 .............................. AATGCACTACAATTAGCATTGCGTTGTAATTGGTC 92364 30 100.0 36 .............................. GAAGATGAGATTACTTTGATAAATAAATATAGAACT 92298 30 100.0 35 .............................. TATGTTAAACCAGATGGATTAGTTAAATAATCTAG 92233 30 96.7 37 ......T....................... AACGCACAAACAGACCAAGACTGGGGAATATTGCCAT 92166 30 100.0 38 .............................. GATGTTCCAGAAATTGTTTTTGAAATATTTTCCTTTAT 92098 30 100.0 36 .............................. ATGATATTAGCTCTTGAATTTTTAAGAGAAAAAAAG 92032 30 100.0 35 .............................. ACATCTTTGTTTGGTATAGGATAAATATTAATTTC 91967 30 100.0 37 .............................. TTTGTATCTTGAACAATATCCCCTTCGTACACTTTAT 91900 30 100.0 39 .............................. GTTTGAACGTTTTTGTAATCCAGAAAGAGTTTCCACACC 91831 30 100.0 36 .............................. ATACACTTATGGTGGTGTAACATTACCACCTACAGG 91765 30 100.0 38 .............................. TGGGCTTGCTTGTATGATTTGCGATATAAGCACCCACA 91697 30 100.0 38 .............................. CCATTTAATCCAGTGTGAAGGTATTTTAAACGGTTTAA 91629 30 100.0 35 .............................. ATGAACCCATGGAGTTCTGCGCATTTTGTTAAAAG 91564 30 100.0 36 .............................. TAACTTGTAAATCGCCCAAAATTATTCCTCACTTTT 91498 30 100.0 36 .............................. GCATAAATAACGATGTATATGTAATAAAAGAAAATG 91432 30 100.0 37 .............................. AAGTCTGCACTTGCTCCTGTAGCTGTTCCGATTGAGC 91365 30 100.0 35 .............................. ATCATGAAGTAATTAAATCATGAAGCTTTTAAAAT 91300 30 90.0 0 ......................G...A..A | ========== ====== ====== ====== ============================== ======================================= ================== 96 30 99.9 36 GTTTAACCTTAACATTGGTTGTATTTGAAT # Left flank : TACCATTTAGTTTGAAGGCGGGATATTAATGGCTAAAAACTATAATTACAATTATGCTTTTGTATTTTATGATGTGAGTGAAAAACGGGTACAAAAAGTTTTTAAAATATGCAAAAAATATCTATTCCATTTTCAAAACTCGGTATTCAGAGGAGAAATAACTCCTTCTAAATTGATACGGTTGAAAAATGAATTGAAAAGTGTAATTGTTGATGAGGAAGATTTTGTTTGTATTATAAAACTGATGAATGATAATGTTTTTGGTGAAGAATTTATAGGCCAAAAAGGCGTAGAAAAAGGAGATTTCTTGTTCATATAAGTAGTAAAATTACCAGGCGGAAATCTTGTCAAACGAGAGAAAACCCTTATAAATAAAGGAGTTATCGCAAATCGTATCAGCTACAAGGAGAAGCAGGTTTCCGCCTGGTAAAAATAGAGAAAAAACTTGTAATATCAAGCTTTTTAAAGTATAGTATTGACATAAAGCCTTTAAATACGTA # Right flank : GAAGTAAGATATTTTGGAAGTGGAAAATTAGTTAATGGTCAATATCGAGGCCGATTATTTTATATGTAATGAGTATATAAAAAAGCTCTGATTGTTATATAGCAATCAGAGCTTTTTGCATTCAGTTTTTGCTGATATCTATCCATTCAACGGCTTGGGAATATTTTTCTAGTTCCGGAATGGTGAGTTCGATGGCACTGTTTCGGCTGCCACAGGCGGGATATACTTTTTCAAATCGTTTTAAGGATTCATCAAGATATACTTTTACGCCATCTTTGGAAGCAAACGGGCAGACACCGCCGATAGGAAATCCGGTAAGAGCTTCCACTTCATCGCCTTTCAGCATGGTGGCTTTTTTGTGAAATTTTTCCTTGAATTTGCGATTGTCGATGCGGACATCGCCTGCCATTACGACGAGAATGGCTTTGTCATCTAATTTGAATGACATTGTTTTAGCGATACGTGCTTCTTCGCAATTTAATGTTTGAGCAGCTTCAGAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAACCTTAACATTGGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 62438-65329 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJJR010000010.1 Megamonas hypermegale strain An809 An809_NODE_10_length_75609_cov_59.9025, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 62438 30 93.3 36 A......A...................... TACTATCGTATTTGTATAAAGTACGCCCGATAGGAT 62504 30 93.3 42 A......A...................... TACCTTTGCTTGCGGGAAAAGTAAATCCTACAAGCAAGCCCA 62576 30 96.7 36 A............................. GATTAAAAGTATGGAAGAAATAGCAGGATTACTGCA 62642 30 96.7 36 A............................. AAAGAAATTAAAAGAGGCTATGGACTATATACTCGA 62708 30 100.0 37 .............................. CTATGCGAACAGCGGCTTCAAACGTGAAGAGTCAAGA 62775 30 100.0 36 .............................. AAACGTCTTGCCAAACGGTGCGCCATGCCGGCGCAC 62841 30 100.0 37 .............................. TTTCATCATGTAGAAATTTTTGACGGGGGATTATTCT 62908 30 100.0 37 .............................. TGGGCGCGCGGGTGTGGCTACGGAAAAATAAAAAACA 62975 30 100.0 35 .............................. TCAAACTCAGCAACAGGGGTATAATCCTTAACTGC 63040 30 100.0 34 .............................. CATTATCTTTGCCAGAATATTTAAAACCTAAAGT 63104 30 100.0 36 .............................. AAATATTTTTGAAGCAGGTTCAAAGCCTGCATGGGG 63170 30 100.0 36 .............................. CATGCCACAAAACAAAAAATACGCTCAAAATGACCG 63236 30 100.0 39 .............................. TTTATAATGGGAGTTATTAAAGGCATGAGCTTATCAAAA 63305 30 100.0 36 .............................. ATCTTTGGACAATAAAATTACAACTAAAACACTGCG 63371 30 100.0 36 .............................. TTTGTTTCCCAAGTTATTACTATAGTATCAAGATAG 63437 30 100.0 37 .............................. CGGATAAACACCAGCCGGTCGGAGCAGTCGGCACTGG 63504 30 100.0 36 .............................. AGCGGTGGCAACTGTGGCTGTTATTGCATACGCAAA 63570 30 100.0 36 .............................. AATTTGCTCATTTCGGTATGGGGTATGTGGTATCGA 63636 30 100.0 37 .............................. ATTTCCGCTATTATTCGGAATATAAAACTTTATATCA 63703 30 100.0 36 .............................. ATACATCGTAGGCAGTACAGGCACAGACGCAGTGTA 63769 30 100.0 36 .............................. CAAATTTTTTTGCAGGTAAGCAGAATTATTTAAGCA 63835 30 100.0 35 .............................. AAAATTTCATCAACAACATCATTTTGTGAGGCTCC 63900 30 100.0 36 .............................. CTACCGAGCAAGAACAGGAAACACCATCAGAACGCC 63966 30 100.0 37 .............................. ATAGACGTGCTATGGCTGCTTACAATAAAACAAATAA 64033 30 100.0 36 .............................. AGAAAAAGAACCTAAACCAAAACATAAGTCAGAAAT 64099 30 100.0 35 .............................. ATTAGCGGACAAAAAGTTGCTGAATACGGATTTAG 64164 30 100.0 36 .............................. GTCTTAATTATCCACGTGATATGAAGTTTTATATTC 64230 30 100.0 36 .............................. CAATAAAATTAACTAACAAAAAGGCGGTTGCGGAAC 64296 30 100.0 41 .............................. GCGGATTTTGGTCGGTTAAAATTTTTGTGATAGAATTTTCC 64367 30 100.0 36 .............................. CCATGCGGGGTCCACACCAATTATCACAGGTGCAAA 64433 30 100.0 37 .............................. AAAAGCCGGTTTTGCCAAAACAAAAACTTATTGCCAC 64500 30 100.0 39 .............................. ATTACGACTGGAAAAGTATAATTGCCAATACTTTGCAGT 64569 30 100.0 35 .............................. AAATCCCGAAACCCGCGCCCAGCTTGCGTTTGCGG 64634 30 100.0 37 .............................. ATTAAATGCTAAATATCAATCGCTTATGAATCAACAA 64701 30 100.0 37 .............................. CTTTTTCAAAACTCATCAAGAGCAAGTCATTAAACCG 64768 30 100.0 36 .............................. ATTGAAAAATAAATTTTAAATTAACACATTTTTGAA 64834 30 100.0 35 .............................. CCGGCTGGAAGCTCCCAAGAATTGCCCATACTATC 64899 30 100.0 36 .............................. GTGCTATAATAAAGGTGTCGAACTTATTAAAACAAC 64965 30 100.0 37 .............................. TAGCTAATAAATTCAACCATTTCTATTCCTCCTTATT 65032 30 100.0 37 .............................. AGTTTTAAGCGCCTACAAACGTATAACAACATAATAC 65099 30 100.0 35 .............................. ATATCCAAAGGCAAACCAATTAAAGCTCAAAGCTC 65164 30 100.0 38 .............................. TAAAATCTTTTGAAAGAAATGTTGTTGGTCCTGGTTTT 65232 30 100.0 38 .............................. CCAGAACCATTTAAAGTAAAAAGACAAATCAGACCAGG 65300 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 44 30 99.5 37 TTTCAAATACATCGTATGTTGCTATTAATC # Left flank : GATATTTACCAAAATCCATGATACGGCAAACAGGCGGTTTAGCCTTTGGCGCTACTTCAACTAAGTCAAGATGAGCTTCTTCCGCTTTGCGCAGAGCATCTCTTGTAGACATGATACCTAGTTGAGCACCTTTTACGTCGGTAACACGAACTTCTCTAGCGCGGATTTCACCATTAACTCTTAAAGATTCTTTACTAATAGGAAACACCTCATTATTTATAAATTTTTATATAATATTCGCGATAAAAAAGAGGATGACCTACGTCACCCTCTGATATTACAAATTAAATAATTAACATTATAACTTTAATTTTTAATAAGTAACCCTACTGACTGCGCGCCATAAGGTGAGAAGCGGTGACCTCTACTTGAAAACGCATTAACAAATGCAACGTGAATACTATAGCACAATAAAAATAGGCTGTCAACAACTTTTTATAAAATAATCATTGTTTTATTAATCATAATAATGAAGAAAATACTACTATAAAATCGATTAG # Right flank : CCTCTATTTATCAAGGTTTCTTTTTTTATTATAATCTTTAAACCCTTGGTATTCAAGGATATGAAAAAATTTTACCAGGCGATTTTGATTTTTTATAGCCATACTAAAAAACAGCTTCAAAAGCTTATATTTTCTAGCTTTATAAACTATTTATCAAAAATTCACCTGGTAAAATCTCAATTTTAAGCTTGTACTGCTCCTACAAGTTCATTTACATCTTCAATATTGTGTTTTTTCATATAATCTGCAATACCATCAGCTACAACTTTTAAAGCAGATGGGTCAACGAAGTTATAAGCACCAACAGCTACAGCAGTAGCTCCTGCAAGCATGAATTCAATAGCATCTTCAGCACAAGTGATACCACCCATGCCAATGATAGGAATTTTAACAGCTTTTGCAACTTGCCATACCATGCGTACTGCTACTGGTTTTACAGCTGGGCCAGAAAGTCCACCAGTTATATTGCCTAAAAGCGGTTTTCTTGTATTTATATCAAT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCAAATACATCGTATGTTGCTATTAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [83.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 448-119 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJJR010000055.1 Megamonas hypermegale strain An809 An809_NODE_55_length_2013_cov_61.2598, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================ ================== 447 35 100.0 38 ................................... AATTTAATGGTGTCTTTGAACCAGTAGAGTATAGCTAT 374 35 100.0 44 ................................... TTGATTGAAAAATGGTGTTCTTATTGGTTCCAGGATTCAAACTT 295 35 100.0 34 ................................... TGGAGATAACAAATTGACTAGAGAAAGAATCATG 226 35 100.0 38 ................................... TAGTAATAGGTTTGACTTTATAGGTTGTTATCTAGAAA 153 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ============================================ ================== 5 35 100.0 39 GTTTCCGTCCCCTATATACGGGGCTAGTTTCAAAC # Left flank : GATAATAAATTAATAGGAGATGTTATAAAATACAGTGAAACGAGTGTCGTAGTTTTAGGCTTTGGATTTTTTATTTATGAAGGAGTGAAGTATATAGTTGATAATGGAAATTTTAAAGATTTAGAAGTAAAAGTAAAAGATTGGTTTGATTTCTCTTTAAAAGCAGATAAATAAATGAGATAAAACAGAAGCTCGATATCTTAGATATCGGGCTTTTTTATGCCTAAAATGAAGAAAAGCTATAACAAAAAGAGTTAATACTCAAATTGTTATAGCTTCATTAAATTTCGTTATTTAATATTGTAGCAACAATACTGCTTTTAATTTTTTATCAATACACCGCATCATCATCAATATCAGGAAAAAGTATTTCAATAGCTATAACAAATAGCGCAAATCCTAATATAAACATTATAAATCACCTCTTAAAATAGCCTTTATTTATATAAGGCTAGCTTTAAATTATTTTGCGAAAAATGATTTGTTTTTAAAAATCAGAG # Right flank : CCCTGTGCCCTGGAACCCGCGTCGTTATTGGGCTGAAAATGCAGTTTGCGGCTGAGAACAGGTTTGAGGTTGATTGAGTACTGTTAAACACTTCAAAAAGTGCCGCGAGCCCAGTAGTG # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTCCCCTATATACGGGGCTAGTTTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.50,-7.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 894-132 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJJR010000063.1 Megamonas hypermegale strain An809 An809_NODE_63_length_1011_cov_73.0782, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================= ================== 893 35 100.0 40 ................................... CAATAGACTCAAGTTTTCGAAACTCAGCTTCCTGAACCTG 818 35 100.0 45 ................................... TTTTCTGAATCAACTTTTATTATGGTATATAGTTCATCAATTCCA 738 35 100.0 36 ................................... CGTACGAGCAGTCGAACTTTAATTTGAGATCAAGGA 667 35 100.0 37 ................................... GTTAAGTATTCAAGCCATGCTTTTTCCTCTGCATTTA 595 35 100.0 36 ................................... TCTCCTTCTTTTGCAAAGAAGTCAATCCATTCTTGA 524 35 100.0 37 ................................... TTTTTGTACCATGAAGGTACATTGTCACCTATGTGGT 452 35 100.0 37 ................................... TTTAAATTATATTTATCAACAAATTCTTTTACTGCTT 380 35 97.1 36 ........................A.......... ATTTCTCTTATAGAGAAATATTCTTTTTCACCATTA 309 35 100.0 36 ................................... GGAGATTCTTCGGCATCTTCAAACACTTGATTCTTA 238 35 100.0 37 ................................... TTCACAACTCTGGTAAAGGGCACAAAATTCTTTTAAA 166 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ============================================= ================== 11 35 99.7 38 GTTTGAAACTAGCCCCGTATATAGGGGACGGAAAC # Left flank : CACTACTGGGCTCGTGGCACTTTTTAAAGTGTTTAACAATGCTCAATCGACCTCAAACCTGTTCTCAGCCGCAAACTGCATTTTCAGCCCAATAACGACGCGGGTTCCAGGGCACAG # Right flank : CCAATAGAAAAGAGCAAAAGTATAACGCTTTTGCTCTTTTTCTTTCATTCTGTCTAAAAAAATGCTGAGATAAAAGATTTTCCTTCTACCTCAGCATTTTTATTTTTATCTATTTATTAATCTCTAAATATC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAAACTAGCCCCGTATATAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.60,-7.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 24575-23494 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJJR010000008.1 Megamonas hypermegale strain An809 An809_NODE_8_length_90771_cov_57.217, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 24574 30 100.0 36 .............................. TTTGTTTTTGCTCCTTTTCTTTGATATTTGTGCAGG 24508 30 100.0 36 .............................. ACTGTATTTGCAATGTATGAAAAGCTATTTGAATAG 24442 30 100.0 36 .............................. TTCACAGTATTTTTAATAATACCTGTTCTTATCCTA 24376 30 100.0 35 .............................. CGCTCTCGTCCAGATTTCCGTTTCCGCCCGCCCAC 24311 30 100.0 36 .............................. TCTGTGCGGCGAATTGTAGACGGTGCGCCGAGCATT 24245 30 100.0 36 .............................. GTTTTATGAGTGCAGCAATAAATGGGCATTGACTAC 24179 30 100.0 37 .............................. CAATATTTACTGAGTTTCCTGAAAGTATAGTAACTGG 24112 30 100.0 36 .............................. AAGTATACAGGCAGATTCTTGTTGTTTAGAAGATGG 24046 30 100.0 36 .............................. AGAAAATTATCATCATTTAGATTTAGTGGAATATGA 23980 30 100.0 36 .............................. CTAATAAAGCAATACTAGCAGGCAATACCTATAGCG 23914 30 100.0 36 .............................. GCGGGTATAATTACAGGTTTTTTGTTTGCCCATTCC 23848 30 100.0 36 .............................. TCTAATAACTTTATGTCATCTTTGGTATATCCATAT 23782 30 100.0 36 .............................. TTGCACGGAAAAACCGCATTTGGATAGAGTTACTTT 23716 30 100.0 36 .............................. CCCCACATCTCTGCACGTTTATTTGCATATCCTTTT 23650 30 96.7 35 .................C............ AGGTATTCTTTCTTATACTTAAACTTTGCACCTGT 23585 30 93.3 34 ..........................TA.. TTTATAAAATCTATGTTGGCTTTATACTCGTTAA 23521 28 86.7 0 ........T..............--....A | ========== ====== ====== ====== ============================== ===================================== ================== 17 30 98.6 36 GATAAACCATAACAATTTTTGTACGAATAC # Left flank : CCGGCAGTGAACACGCTGTAACAGCATTTGCCCGTGCTGCTTATAAATTAGGCGAAGATTGTACTATACTAGGAACATTTTCCAGCCAAGGCAAGATAAATCCTGCGCTATTAGCTCGCCGTCAAAATAATACTGATAAAAATGACCCTCATGCAGCTACAGAACGCAATAAAAAACGCTGGGAAAGTGCAGCAAAACACCCCGATGAAAATGACATTCAAAGAGCGAAAGATTTTATCGCTGCTATGAAACATAAATTAGCATTAAGAGAAAAATATCTTAATAAATAAATCCCCGAAAGACTGAATGATTACATTCAGTCTTTTATATTTACCAGCAAAAAAAATTGTAAATATTTTTAAACCCTTTATTTATAAGCTTTTATCACGCTTTTTTACAAAAACAGAAAAAACCTTCATCACTTGGTAAAAATCAGCAAAACCTTGTCAAATAAATAAATTTAAGCTATACTAAATATACAAACCTTAATTTTACAAGGG # Right flank : CTCTAAAAAAGGCATAAAAAAACAGCATGAAAATTCATGCTGCTTTTTTATTTTCACTATTTATTTTTATAGCCAGCGATAATTTACAAAACCTGCTCCGCGGGAGTTCATTTCTCCTAAGCCTGTGCCTAATGACATATATGCCATCTTTTGCGCTATTTCATTGTCCGCAACGCTTAGGCGAATTTTATCACCTAATAATTTTACATTTTTATATTCTATCGAAATAGGAACTTTATTCAAAAACTCCATTGTTGTATATAATTGAAAATTCTCATCTATATTATCATTATTGAACGAATTCCATTTATTAGCTAGATTTATGCGTATGCGCCTTGCAAATTCTTCTTCACTCATCACACTTCGCCAATAACCTCTTTCATCTTTTACAATGAGCGGTGTTAAAGTATAGATGAATTCAATTATTTTTTTCGGCAGAATTCTAAAATCCACATTTAAACCTTTTATATATCTTGTATATGTATTTACACAAATTTGTT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAAACCATAACAATTTTTGTACGAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //