Array 1 22637-23991 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAKH010000020.1 Neisseria meningitidis strain 10016 NODE_20_length_40752_cov_41.530474, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 22637 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 22703 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 22769 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 22835 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 22901 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 22967 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 23033 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 23099 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 23165 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 23231 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 23297 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 23363 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 23429 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 23495 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 23561 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 23626 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 23692 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 23758 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 23824 36 100.0 30 .................................... TCCCGACATTGACGGAAAAACCCGAAAGCA 23890 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 23956 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //