Array 1 2130959-2135320 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014176.1 Clostridium argentinense strain 89G chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 2130959 29 100.0 37 ............................. TATTCTTTATAGCTTTATCACAATACTGCTCAATATC 2131025 29 100.0 36 ............................. AAAGTATAAGCTAAATCTTCATATCTTTTACGTAAA 2131090 29 100.0 36 ............................. GAAACAATAAAGTTTTATGGTACTAACACTTATAAA 2131155 29 100.0 37 ............................. TTTACAGGCGACTTTGCATATTTCTATGAAGAAATAG 2131221 29 100.0 37 ............................. TAGAGATATTGAAATTAGTAGATTGTAAATAAATAGA 2131287 29 100.0 36 ............................. TAGATTGGACACAACAAAATGTAATGCCACAAGTAC 2131352 29 100.0 36 ............................. ATTGAAATAACGAAAGAAGAAGCAAAAGAAAAACGC 2131417 29 100.0 36 ............................. TTAGATGGAGAATGCGGGAGTGTTGAAGGAGAATTG 2131482 29 100.0 36 ............................. ACGAAAAACAAGAGCTAAGTAGAAGAATAGTTCCAT 2131547 29 100.0 37 ............................. TTGAAGTTTGTTTATATTCCTTTGCCAACCGAACAAC 2131613 29 100.0 37 ............................. GCTAGAACTGTAGTTGAATGGTTTATAGAACAGGCTG 2131679 29 100.0 36 ............................. TTGAAGACATTGGGTCAATGAAGTTATACCACAAGA 2131744 29 100.0 35 ............................. TATCATAGGCCTAAAACAAAAGAAGAAGCTTTAAA 2131808 29 100.0 36 ............................. CAGTTTGGAGAATAAAGGTAGAATGGCGGTATTATT 2131873 29 100.0 37 ............................. CACATCTACGGTTAATAGCCCAACAATAACAGTCAAC 2131939 29 100.0 37 ............................. AAAGAAATAAATTCTAAAGGTACTGTTAAAGTAGCAC 2132005 29 100.0 36 ............................. GATTTACCCGTTCCAGTGTCCCCATCAATCAATAGA 2132070 29 93.1 36 ......C.........A............ TTAAAGAAATAACATACATATTCAACTTCCTTATTA 2132135 29 93.1 34 ......C..........T........... AGCACAAGGAACGCATGAAGAAGTGCTATGCATG 2132198 29 96.6 36 ....................C........ GACACTAAGATTTTTCATAAGTGTTGTAGGTTCTTT 2132263 29 93.1 35 A...........................C ACAATTTGGTGTCATGCATATGGCTATAAAAAATA 2132327 29 96.6 36 ......C...................... TAGAATAAGATCTAATACCTTCCTCTTGCCTACAAT 2132392 29 93.1 36 ......C.............G........ TTCCCTAAAACTACGATACTAGTTTCCTTGTCTTGT 2132457 29 89.7 36 ......C.............G.......T TAGTATAATTTGTAGCAATAAGAAAATTATACTAAA 2132522 29 93.1 36 ....A.C...................... TGAAAACACTAGGCTTTGCCTAGTTCACCAAAGCTT 2132587 29 93.1 35 ......C..........T........... TGTTATGATAGAAGTAGTAGCAGATTAACATATTG 2132651 29 86.2 36 ......C...........A......C..T GAAGTTTGGGAGATAGTTAAAAAAGCTGTTTTGTTA 2132716 29 86.2 36 ......C...........A......C..T GGTAGCAGTTCTGTAAAGTGCTTATATAAATCTATC 2132781 29 93.1 37 ................AT........... ATTCAAGAAAGAGTGCAAAATTGAAATAATAATTATT 2132847 29 89.7 35 ......C........A............T CAAATTATTGCTATATTACAAGCTTGGGTTTCTGC 2132911 29 89.7 37 .C....C.........A............ TATACGTGTTCAGAAGATGTTAATTTAGCCTTGGCTG 2132977 28 93.1 36 ......C...-.................. CCGAACAAAACCACACTCTTCGTGCTAGGCATAAAG 2133041 29 86.2 9 ......C..........T..G.......T CCGAGTTAG Deletion [2133079] 2133079 29 89.7 33 ......C....G......A.......... GGCTTTAATACTCAGAATATGAGTCTAATTTTT 2133141 29 96.6 36 ............................T TATGAAGTAGTATGTTTTTTCGATAGAGACGGTAAT A [2133150] 2133207 29 96.6 37 .................T........... ATGTTATGTTGAATAAATCTGCGCTTGAAGACATTAA 2133273 29 82.8 36 ......C..........GA......C..T GGTAGCAATTCTGCAAAGTGCTTAGATAAATCTATC 2133338 29 89.7 37 ................AT..........T ATCATAAAATGATCTCTTTTAAATAAAAAACTATCTG 2133404 29 93.1 36 ......C............A......... GATGCTCCAAAGATAATATCTGTTGAGCAAGATAAA 2133469 29 96.6 37 ............................T TGGATTTGGGGAATAGGTGCTGCAACATATGCTGGGG 2133535 29 89.7 35 ..C...C.............C........ ATAAGTAAAGAGTATACATATAGGATATTAAAAGA 2133599 29 89.7 36 .....GC..........T........... AGTGGAAAATCATGATTGATATTTATAACCCTAAAA 2133664 29 93.1 36 ......C......G............... GTAAAATGCGTTAAGTCAACTTCAAGTAATACCAAA 2133729 29 93.1 36 .C....C...................... ATACAATTTTGTATTTTTTTGTTAAAATGTGTACAG 2133794 29 89.7 36 ......G.........A..T......... TGAAAACACTAGGCTTTGCCTAGTTCTCCAAAGCTT 2133859 29 86.2 36 ......C...G..C...T........... ATCTTATTGTGGGTTTAAAATGGCTTAAATTCAACA 2133924 29 93.1 35 ...C..C...................... GAAGAGGATATAAGGGGATACTTAGCAACAAAAGA 2133988 29 100.0 36 ............................. GAGCGGAATTCGTTTAATTGGATTATAAATAATATA 2134053 29 100.0 36 ............................. GACACGTTATTAACTGTATTAAATCTTTAATATTTG 2134118 29 100.0 35 ............................. CTAGCTAAGTCTTGTATCAGCGTAGCAGGATACTT 2134182 29 100.0 36 ............................. AAGAAGAAAGATGGAATTTATGCAATAGTAATGGAA 2134247 29 93.1 35 .....GC...................... TAGCTCCTTGCAGTTTGTTTATACTCCTTTGCCAT 2134311 29 93.1 36 ......C.............C........ GCAAAAGCATATTCAAATTCCTTGTAAGCGTCTAGG 2134376 29 89.7 36 ......C..........T....C...... TATTATGCTAAAAAATATTAGAAGTAGAAAAAACAT 2134441 29 93.1 36 ......C...............C...... AAGTAAACCCATCCTGCCCCGAAAAATAGTTCTACG 2134506 29 93.1 36 ......C......A............... GAAAAGAGTAAGATGACTTGGAGTTTTGATAGAGTT 2134571 29 86.2 37 ..C...C..............G.....G. AGTGCTGCTACTTTTTCTATAGTCCACCCCTTCTTTA 2134637 29 96.6 36 .................T........... TTATGGATAGAAATGTTGGTAGAAGCAATGCACAAT 2134702 29 93.1 36 ......C........C............. TAGCTCTAATAATTTAAATCAGTAATAAGGTTTAAA 2134767 29 86.2 37 ......C........C.T..........T GGTATTGAAAAAGAAGTAAACATACAAATAGGAGCAA 2134833 29 100.0 37 ............................. ACTGTAATTAAAATCAAACAACAATTAGACCCCAAAT 2134899 29 89.7 36 ...C..C..........T........... GTAAGAATTGATGAAGCTAATAATTCTATACAAGAG 2134964 29 93.1 36 .....GC...................... CAAAGAAAAAGAAAAGAAGCAGAGTAGTAATATCGG TAT [2134977] 2135032 29 89.7 36 ......C................GC.... AAAAAATCCGTTATCATACACTTCATTGTCTACATT 2135097 29 82.8 36 ...A..C...........A.C.......T CATTTATCCAGACATAGCTTTGCTACACATAAGTTA 2135162 29 93.1 37 ................AT........... AGTACTACAGAACTATCTTCCAATGGAACATTCAATC 2135228 29 93.1 35 ......C.........T............ AATATAGAAATTATTTCTAACCATAAAGCCATAAA 2135292 29 89.7 0 ..................A.....C..G. | ========== ====== ====== ====== ============================= ===================================== ================== 68 29 94.1 36 GTTTTATATTAACTATGAGGTATATAAAG # Left flank : TATTTTATAGAGGATGAACCATATAAGCCTCTTAAAGCGTGGTGGTAGAATATGTTTGTAATAATAACATATGATGTTGGAGAAAAGAGGGTCAATAGAGTAAGAAAAATATTAAAAAAATATTTAATTTGGACCCAAAATTCAGTTTTTGAGGGAGCAATAACAGAGGGAAAACTAAATAAATGTATGGCAGAAATAAATAAAATATCTAATAGAAATGAGGATTCAGTTTACATTTATAAAGTAAGTAATCCACATAATATAAAAAAAGATGTTTATGGTATAAATAGAAATTTAGATGACTTGTTTATATGAGTTGCAGTAAAGTGCATTTTATATAGACATTAATAAAATAAAGGAATATCAATACTTTACGGTAGTTTTTAATAAAAATAAAAAAACACTATTGCTACTTTACTGCAAAAAGGTATAATTTAGGTATCTAGGTTAGCCTTGTAGAATAAGTAATATCAGTGCTTTTACTGTTTTTTAAAAATGGG # Right flank : GAGTGTTAGCAGTTGTTGTATTTTATAAACAACTGTACCAAATAATAATTAATAAATCTCCCAATAGTATTTCCTAAATATTTTATACAAACAATGTTTAGGAACATTCGCAATTTTGGAAATTTATTGGCAAAGGTGAGAAATTTGGAATTAATTTATCTTTGAAGCTACGGAGTAACTTTCTATAAAAAACTAGCATTTATAGTATCTCCACAGTATTAGTTAAATTTATTAGTGTTGTTCCAAACTATACTGCACCTCAGGGGAACCCTAAAGGGCTTCACTACTGTTCCCCAGAGGTGAAAAATTATCAATCGTAAAAAATTAAGAGTTAATAATTAAGAAGGAGTTAATAGAAGAAAAATAGAAATTACTTATAAAATAGAAAACTAGGAGGAAAATATGCCGAAATTAAATATTGAAGACTATAATATTCATTACGAAAGCTACGGAAGTGGGGAACCAATTATATTTTTATCTGGAATACTGATGAGTACAAT # Questionable array : NO Score: 5.34 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGTATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [10-54] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 2568198-2566990 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014176.1 Clostridium argentinense strain 89G chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2568197 30 96.7 35 ...............A.............. GTGTAAAGAACTAGTAAAGCTAATAGCAGATGCAG 2568132 30 96.7 35 ...............A.............. TGACTATAAACATTGTTTTTATATTTAAAATAAAT 2568067 30 96.7 35 ...............A.............. TGTTGCATTTTTTCTTTTAAACCTTCTACCATTTT 2568002 30 93.3 37 .......T........G............. AATTGATGAACTGAACATTTATATTTTTTGCAATAAA 2567935 30 100.0 36 .............................. ATGAGAGGTAATTCGAAGGCATTAGGAATTGAAAAA 2567869 30 96.7 35 ................G............. TAGTCTTTTGAATAACTGTGCAATAATTCTATAAT 2567804 30 93.3 36 ...............AG............. ATATTTCCAATTTGATCTTGAAGTTTTTTAAGTGCA 2567738 30 93.3 35 ...............AG............. GTTAGTGCTAAGTCTATTCTATCTTTTAAATGTTC 2567673 30 96.7 35 ...........G.................. TCAGCCTGTTTCCTAAAATCATTAGCATTTCCAGG 2567608 30 100.0 36 .............................. TTAAATGTAAGCAACTATGTAAGTTTCTTTCTTTTC 2567542 30 93.3 37 ...............AT............. TATTTAGGCATTGACACGTATACCATAGGATTTTCTT 2567475 30 90.0 35 ........A.......G.G........... GTAGTTTCTAAATCAATTTCATCATAACCAATAAT 2567410 30 93.3 36 ........A......A.............. CCATTTGTAAAACATCCAATTCCTTTATGAATCCAT 2567344 30 90.0 36 A..............AT............. AGGATAAGTTTTATTGTTAGAAGTGTATTATAATCT 2567278 30 100.0 35 .............................. TACTCTTACCACCTTTGTATTTAAAAGTTGAGCAA 2567213 30 100.0 34 .............................. ATAACTACTGTAGTAACAAAGTCTTTTAAATCAT 2567149 30 96.7 35 ................G............. GAGGATAGCAACATAAAGTCTCTACTCTGAATACA 2567084 30 90.0 35 A.......G......A.............. AACATTGCCATAGACACTTCGTCTAAATTACAATT 2567019 30 76.7 0 A..A...........AT......A....TA | ========== ====== ====== ====== ============================== ===================================== ================== 19 30 94.4 36 GTTGAACCTTAACATGAGATGTATTTAAAT # Left flank : GACGTCCTAAATCTCTAAGAGGTGTATCGCCATCGCCATCAGCGACAGCAGCATAAGTAGTTGCTACATTAGCACTTGTAATCATAGTGATACCTAATAATGTACAAGCTAAAACTTTTTTTAATTTCATTTTACTTTCCTCCAATAAACTAAAAATAATAAAAATAGTATGTGTTAAGCTCAACATGTACTATCTTACCATAACTTATAAGTAATGTAAACATTTACCATAAATGAAATTAAATATTACAAATGCACTCTCGAAATTTTTGTTTCATAAAAGGAAAACTTAAATAGTTGTAGAATAAGTAAGGTAAAGATTATTTTACCAACCATCTTAAATATTAAATACCTCCTAACAAATTGAAAATACAGGCTTATGAGGTATTTTTTAAAAAAATTTCTAAAAACATAAAGCGGTTGGTAAAAATTTTAATAAAGCCTTTATTTTCAATAAGCTAAAGGATATAATGAAAATAAAGAATGGCTTGATTGCAGTA # Right flank : AAAAGGACTATTAGGATTGTGCCTAATAGTCTTTTTTCATTTAAAATATATTAATGTAGTGTTTTCGTTAGGAGCTTTCTTATAATGAATTTATATTTTATATTTATCAATCTAATGATAATTACTTTTACTGTGTAGGCATATATAAATTTACTATTAAAAATCTAAATATTTTTTATCTACATTCCATTTATGGATGTTATAAAATAAGATGTCGAATAAAACTATATATAATATGTAGGAATTTCTTAAATATATTTGATTCTTTTAAATAATAGACGTATAATATGCGTATAAAGTAATTTAAAATAGTCCTATAAATGAATGAAAAATTTATTGGTATGTGTTTTTAGAAATTTACAAATAATATAAAGGTTTGAAGTTAGCAAACCGTTGGTATTACTCAAGTAGATACCATAAATAAATTATTCGGATATACCATTCATAATGATAAAGGTAAACCTACAAATTCTGAATTTATTGCAATGGTTGCAGATAAG # Questionable array : NO Score: 5.29 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.31, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [14-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 3 2872862-2872632 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014176.1 Clostridium argentinense strain 89G chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 2872861 32 100.0 35 ................................ TATATTTTATTTAGACCATTTTGCACATCTGTAGG 2872794 32 100.0 33 ................................ AAGTTTATTTTTCCTAGCTGCCATGCTAGGCCA 2872729 32 100.0 33 ................................ GGTACAGCTTTGTATTGTTCTTTCAATTTGTCT 2872664 32 78.1 0 AT........T.......A.....CAC..... | C [2872634] ========== ====== ====== ====== ================================ =================================== ================== 4 32 94.5 34 TGATTGAACCATAACATAGGATGTATTTAAAT # Left flank : TCAGTTATAAAAATAGGTACAAAGGTAAAAAACATACGTTTAGTTGATGGAGATCACGATATTGACTGTAAAATTGATGGCTTTGGAGCTATGAAATTAAAATCTGAATTTGTTAAAAAGATATAAATTGAATTTTACATAAGTTGTGGTATAGACACTGTAAAAAATGAAAAAAGAGTAGATATATTTATTTTTATATAAATATATCTACTCTTTTTTATTGGGTTTTGTTTTAAGGTTACATTAATAAATTTACATTATGGAGGATATCATGGCATGGTCAACATTAACAACAATTCAGAATATGTCCTAAACTATATAAAATTTTCCCAACTACATTCAAAATAAAACTTCTCCTAATCAATCGAAAAATCAACGTTTAGGAGGAGTTTTTTATTAAATTTATCAAAAATTCAAAACGGTTGGTAAAATTTTTAATAAACCCTTCATTTTCAATGGATTAATGGGTATAATGAAAATAGAGAATGGCTTAATTGCAG # Right flank : AGCTATAATAAATTTCAATATTGTATATTTAAAAAACTACATAATTATAAAAGGATTTCAACCTATCTAAGTAAAAAATTATTTAGATAGGTTATTTTTTTATTTAAAATATTTTTATGATATTTAATGAACTGTGGAGAAAAATGGAGTAATAGAGGGATAAGGTTAGATAAAGAATGAATTGTTTATTCATTCTTAGTGGAAGACACTTTATCATAGGAAAACCTATGTAGAAGTGGCTGTAAGGATTTGTAAAGAATATATAGGTGGGCTAGAATTAAAGTATGTATATACATTATTTTAATAACTAGTATAGAAAAAGGAGTTGATTTTATGAATAGGGCTATTTTAAGTGTTGATTGGGACTATTTTGTAAAAATTATACCTCAGTGGTGTGGCTCCTATATTGAAAACCAAAGAGGACTTCTTTCCGCTTGGTATAGAAGATATATAGAAGAAGGTATAAAAGGAGTTAATTTAGAGGAAGAAATAAAAGTAAG # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGATTGAACCATAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //