Array 1 419806-420506 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060263.1 Dickeya zeae strain JZL7 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 419806 29 100.0 32 ............................. CCAGTACCAGTCTCTAGGACACTTATAAACAT 419867 29 100.0 32 ............................. ACTGCACGATCTGAGAATCACACATTACTGGA 419928 29 100.0 33 ............................. TGAAAACCTTCCGGCACTGTTTACAGTGACCAA 419990 29 100.0 32 ............................. ATGATGTTACGCCGCTAATATCCCCCGATCAT 420051 29 100.0 32 ............................. CCAAATTACTTTTTTAGGTTTACTTCTGGAAA 420112 29 100.0 32 ............................. CTAATTTTACTCCATCTCTAAATTGTCAATCT 420173 29 100.0 32 ............................. AAAAAATGACTATCAGTCTGTCGGGATTTATC 420234 29 100.0 32 ............................. AATTTCTTTCAGTGAAACGGTAATGGTCATGT 420295 29 100.0 32 ............................. CTCATCAACACAATCTGACGCCATTACCAGTC 420356 29 100.0 32 ............................. TAGTGAAGATGCAGGAAAGATAAGGGCCTAAA 420417 29 96.6 32 .....................G....... GGTACGAGTCATTCGAAGAGTATTTTTCAGTG 420478 29 89.7 0 ............A.............T.A | ========== ====== ====== ====== ============================= ================================= ================== 12 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTGAAGACGTGCTGGCCGCCGGTGAGATTGATCCACCGCAGGCACCGCCAGACGCACAACCGCCCGCCATTCCTGAACCGGCACCCTTTGGTGACGCCGGGCACCGGGGGCATGGCGGATGAGCATGCTGGTGGTGGTAACGGAAAACGTGCCGCCGCGCTTGCGCGGTCGGCTGGCGGTCTGGCTGCTGGAGGTACGCGCTGGCGTCTATGTGGGTGACACCTCGCGCCGGGTACGGGAGATGATCTGGCAGCAGGTGGTGGAGCTGGCCGAGCAGGGCAATGTGGTGATGGCCTGGGCCACCAACACCGAGTCCGGTTTTGAGTTCCAGACCTTCGGCGAAAACCGGCGGATGCCGGTGGACCTCGATGGTTTGCGGTTGGTCTCTTTTCACCCTGTTGAAAATCAGTAAGTTAGCGCTCTTTAACAACCGGGAAAAATCGGTAGAATTTTCCTGCCTTTAAAATGCCTTATAAAACAGGTATATACTTTTAGA # Right flank : AGAAATAAACCGGGCACGCGGTGTGATTACGCGTGCCCGATGTGAGTGACCATCAGACAGAGTTAAAACGACTGCCAGTCGTCTGCGCTGGCCGAGGTTTTGGCGGCGGGCTTTTTGAGCGCCAGTGTCTTCGCTGCTGGTGCGGATGAGGGCGCAATCATCGGTCGGTTGCCCGCCAGATTGTAAGAGCCGCCCCTTGCTTCTTCGAGATGGAAAATACTGACCACCTGTTTTAACTGCTCAGCCTGCTGTTGCAGGGATTGCGTGGCATTGTAGCCTTCTCTGACCAGCGAAGAATTTTGCAGCGTGGTTTGTTCCATTTTATTAATCGCCAGGTTGACCTGCTCGATACCCAGTGACTGCTCCTGACTGGCAACGCTGATCTCACCAACCAGTTCACTGACTTTGCGCACGCCATCCACAATCCCCTGAATGGAGACCCCAGCTTTTTCCACCAGCCGGTTCCCGGCATCCACTGTTTCTACCGAATGACCGATCAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 690694-691274 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060263.1 Dickeya zeae strain JZL7 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 690694 29 100.0 32 ............................. CAGCAACTGAAACCTTCTCCCCGGTAAAACTC 690755 29 100.0 33 ............................. CACTGTCTGTGCGTTATTTGCCGCTAAAAGTGA 690817 29 100.0 33 ............................. TATGCATCACCATCGAAGAAGGGTTTTTATGAC 690879 29 100.0 32 ............................. CTCATTCAGATCGCTTTGGTCTTTGATGCTGG 690940 29 100.0 32 ............................. TTTGTACCCATCGCTGCAAGCGATACCGCATC 691001 29 100.0 33 ............................. AAGAACAGACCACGATAGCTGTTCCACCCATGC 691063 29 100.0 32 ............................. TTATCGAGACTGATATTAATCTGATGGATACA 691124 29 100.0 32 ............................. GTTGTCACCGTGGCGCACCGCTGCTGAGTGTA 691185 29 100.0 32 ............................. GCAATTTTTTCACGGTTATCGAGTCGGATACG 691246 29 86.2 0 ............T............G.GT | ========== ====== ====== ====== ============================= ================================= ================== 10 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTTAAAGCACGGCAGAAAATCGGTCAGTGTCGAAGGCTGGTGTTGTACCAGCCTTTCTTTTTGCAGTTTGCTCAGTTGTTTTATGCGGTATTCCCACTTCAGCGCCGTCGAGCGATCACCCGCCACACAGTGATACACCAGCGTCAACGGCCCCTTTCCGCGCAGTGATCGCGCACCTTTGCCATTCTGATGCTCTGCCAGACGCCTGCCGACATCGGTAGTAATACCGGTATAAAGCCATCCGCTGCCGGTACGCAGCAGATAGACAAACCAGATAGTCTCACTGTTGTTCACGCCATTTCCTTTTCGTGGTTTAGCGCTTATTTTACGGTGACAAGCCGATAAAGGCTGCCTGTTTGACGGCATTCATCGGTGGGCGTGGGTGAGTGAAATTGCGACCTTTATTTATCAATGAGTTAGCGCTCTTTAACAACGTGAAAAAGTTGGTGGAATTTTTCAGGCTTTAAAAGTCATTAGAAAACAAATATATACTTTTAGA # Right flank : TTGCCGTGATAGCACGGCACAATCCGTCGCGGTGTCTTGGGCTTTATTGTGATAATATTCACATCTATCGTGAATTATGTGTGTGTAATTTCTTTTTTATGTGAATAAAACCACAAAAAGGGTTGTCATCTCCGGGTGAAATAGCGGTATTCGCCGGAGAGATGACCGTGTGGCCAATAAGCGGGAGCCTTGTATGACTGATTTAACTGCAGCAGCGCAGCGTGCGCTGGGATTGATGGATTTAACCACCCTGAATGATGACGACACCGATGAAAAGGTGACGGCCCTGTGTCGTCAGGCCAATAGCCCGGCGGGGGAAACCGCCGCTATTTGTATCTACCCGCGTTTTATACCGCTGGCGCGTAAGGTGCTGCGTGAGCAGGGCACGCCGGATGTTCGTATCGCCACCGTGACCAATTTCCCACACGGGAACGACGACATTGATATCGCGCTGGCGGAAACCAATGCGGCTATCGCCTACGGTGCCGACGAGGTGGACG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3970110-3970379 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060263.1 Dickeya zeae strain JZL7 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3970110 28 100.0 32 ............................ TGCGAGTCAGAGGACGCATACTCAAGCGGTTC 3970170 28 100.0 32 ............................ AATGCTAAAACGGACTCACCACCCACACAAGC 3970230 28 100.0 32 ............................ CGTCGTATGGGCACACTGATTACATCACCAGC 3970290 28 96.4 32 ........................A... AATCTATTTCTGATAATAGTAGTTATCGGAAA 3970350 28 75.0 0 ............AC.........GACGG | GG [3970371] ========== ====== ====== ====== ============================ ================================ ================== 5 28 94.3 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : GGAAATCCCACCCATGGCGATATCGCACTGGTCGGATTGAAAATCTGGCATCAGGGTTTTCCAACTGGTTTTCACCCATTCCACCTTCACGCCCAGGCTTTTCGCCAGCGACTGCGCCATCGCAATATCGATACCTTCGTAACTGCCATCCGCCCGCAGCGAGGTATACGGCTTATAGTCCCCGGTGGTACAAACCTTCAGCACCCCGCGTTCCTGAACCTGATCAAGATGAGAAGCCGCGCTGGCACTACCGGCCAGCCCCAATAACAACATCAATAAAAACCGTTTTTTCATGAAATTTCCCTGCACGTCACGCCTGTCTGGCAAAAACGTCACTGTAGCACGCCATATTCACGAATATCGCTTTTGACCCTTTTTTTTCGCCCCGTGATAACTCGTTGATTTTTAATGATGATAAAGGTGGGTTTTAAAAAAGGGTTTCACGACCAAAAATGTGACTTTCCCTTTCAACATCAAGCCATAAGCGATAAATTGCTACT # Right flank : GGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCACGGCAGGGATGCCGTGCAAGCCCATTCCGCGTAAGGAACGCGTAATGGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGCTAGCGGCGTAGTTTAGCCATCAAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAGGCGACACGGTCTATCCCGCACGAAACCACCCACCGCCCCCACATACATTCGACAAACACATTCGCCAGCACCCCGGCTGTTTACCAACAGCCCAAAAACACTACTCCGCCGTCAACACCGCTACCGCCTTTTTGCGCTGTTTGATGGCATAACCTGCCCCCAGCGCCAGCAGCCAGAACGGAATCAGCCACACGGAAATCTGAATGCCCGGCGTCATCGCCATGATCACCAGAATCCCGGCCAGAAACAGCAGGCACAGAATGTTAGTCAGC # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 3975939-3975491 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060263.1 Dickeya zeae strain JZL7 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3975938 28 100.0 32 ............................ AATGACCACAATACATCGACCTGCCGGTGATA 3975878 28 100.0 32 ............................ GCCGATTGGGAATTGTACGCTTCCCCGGTATC 3975818 28 100.0 32 ............................ GCTATCTGATCGACATCAGGCAAAACAAGGCC 3975758 28 100.0 32 ............................ TGCCGGATAACAGAGAAATCTGCCGTAACGGA 3975698 28 100.0 32 ............................ AATGACCACAATACATCGACCTGCCGGTGATA 3975638 28 100.0 32 ............................ CGCACCAGCAATAAATGGCTGAATAATTGCGT 3975578 28 89.3 32 ...........CAC.............. GCTATGCCGATGAGCTGATCGACGCCCATCTG 3975518 28 82.1 0 .....T....ACAC.............. | ========== ====== ====== ====== ============================ ================================ ================== 8 28 96.4 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : AGGCGCTGACGGCGCTGGAGCAAACCGGCTGGCGCACAGGGCTGCGCGACTATAGCACCATCACCGAGGCACTGCCGGTGCCAGCGGGTGCGCAGTACCGCACCGTGCGCCGGGTGCAGGTGAAAAGCAGCGCTGAGCGCCTGCGCCGCCGGGCGGTGAGCAAAGGTTGGCTGACCGCGGATGAAGCCGCTGCCCGCATTCCCTATGCGGTGGAAAAACGCACCTCGCTGCCGTATCTACCGCTGCGTAGCCTTTCCAGCGGACAAACGTTTTTACTGTTTGTCGAGCACGGCCCGCTACAGGACAAACCGGTCGCCGGTACCTTCTCCAGCTACGGCTTAAGTGCGACCGCCACCATCCCGTGGTTTTGACCCTTTTTTTGCGGCCAGTTCTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAGGGTTTTCCCGGAAAAACGGCGATTTTTCTTTAACAATCAGGCAATAAGCGATTATTCGCTACA # Right flank : CAAAGGCGATCCTCACAGACTGATGGATCTTGTTCACTGCCGTACAGGCAGAGGTTGACGGGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGAGCGGCAGGACGCCGCGAAAGCCTGTGCCGTGCATGGAGCACGTCACAGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTCAGCGGCGTAGTTTAGCCATTAAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTAGCAAAGAAGCGATACGGTTTATTCCGCACGAAACCACTCACCGCCCAGCATAAATCAGGCCGCAGCAACCCTCCGTAGTTTGCCAGCCCCCATCCCCGGCGGGCATAGCCGTTTCCTGCAAGGAAAAAAATCCCCCAACCGTTACCGGCTGGGGGAAAGGGCGTAAAAAAGTGAAAGGAATAACTTACTGTACGGCGGCGAAGGCAGCAGCGACGCGCTGT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 3984519-3987188 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060263.1 Dickeya zeae strain JZL7 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3984519 28 100.0 32 ............................ GTAATCCTCAGCCAGGCATCGGTGCGGGTCAT 3984579 28 100.0 32 ............................ TTTTGCCGCTTTTGACAAAAACTGTAACGTAC 3984639 28 100.0 32 ............................ TACCAGGAGAGAGCGATTAATCGGCGCATATG 3984699 28 100.0 32 ............................ GGAGTGTATCCAGATGCCGCGGGTAATCCCGA 3984759 28 100.0 32 ............................ ATCTGCACCAGCGCTTTAAAAGCCGACGGATG 3984819 28 100.0 32 ............................ AAACTTCGGCATCATGAACGACCCGGCATTGC 3984879 28 100.0 32 ............................ AGCGTGTCCAGGCGCTTATCGAACTGCGACTT 3984939 28 100.0 32 ............................ ATCGGCAGTTCGTTACTCGACATTGGCGCGAT 3984999 28 100.0 32 ............................ TATGACTTTAGTTCTTCAACGCGCAGTTACGA 3985059 28 100.0 32 ............................ TACATGACGCTGAAACGCCTCGTTGAGCGTTA 3985119 28 100.0 32 ............................ AGGCACAAAATTTGATGCGTGCTCATGGACTG 3985179 28 100.0 32 ............................ TGACCAGCGCCAAACCAAAAGAGGCAAAACCA 3985239 28 100.0 32 ............................ GTGAGGCTTAAAGTGCCGTCAGACCCACGTTA 3985299 28 100.0 32 ............................ GAAAATGGCAATTATTTGACAGCAACATTTTC 3985359 28 100.0 32 ............................ GTGAAAACTGGTTGAACCCGGTAAAAGTGCGT 3985419 28 100.0 33 ............................ GTAATGGAAAGCGCCGCCGTGCTTATTTTTGAT 3985480 28 100.0 32 ............................ ACAAAATAACGGCGGTATAATCACATCCGTCA 3985540 28 100.0 32 ............................ TGCACACTGATGACGCTACCGGCTTTATGTTG 3985600 28 100.0 32 ............................ GGTCTTCGGGTTTGTTAATGCCAAATCTCTGC 3985660 28 100.0 32 ............................ TTCATAGTCCAGTCACTTGCCTGCTATGAATC 3985720 28 100.0 32 ............................ GAGTGCTGGAACACTCGCGGATGGCAAATAAT 3985780 28 100.0 32 ............................ GAGTGCTGGAACACTCGCGGATGGCAAATAAT 3985840 28 100.0 32 ............................ GAGTACCGCAATTTATCATCACGCTGGCCGCT 3985900 28 100.0 32 ............................ TGTCCCGATCTGCCCCTTAGCTGCGCAGAATG 3985960 28 100.0 32 ............................ TCGCGGAACCGTGCTGCCATTCCTGCGCCTGA 3986020 28 100.0 32 ............................ AGCGGACCCGGATTCATTTCGGGGGATTGGAT 3986080 28 100.0 32 ............................ TGGAGTGATTGCGCTGGTAATTTCAGTTAAAA 3986140 28 100.0 32 ............................ ATAATCATCCGGGCGACTCTGGCGGCACAACA 3986200 28 100.0 32 ............................ TGTCACCACGCTGTACGGCCGACTCCAGCGCT 3986260 28 100.0 32 ............................ ATGCCAAGCGACTGGTGAAGCCAGCATTTTAT 3986320 28 100.0 32 ............................ AGTTTTCCCGCAGACTGCGGCAGGTCGATAAC 3986380 28 100.0 32 ............................ ATAGAGCTGTTCGAGGCGGTACCGGGCCTCTC 3986440 28 100.0 32 ............................ GAACAGGTTGGCATCGCACAGGTCGGCACCGA 3986500 28 100.0 32 ............................ TTAACTGATCGAAATGTTCCAGTCCTTGTTGT 3986560 28 100.0 32 ............................ ATTACCGAATGCATCATTTACATCGCCGTTTA 3986620 28 100.0 32 ............................ ATAGTCAGGGCAAAGCCGGGACATCGCCATCG 3986680 28 100.0 32 ............................ TATCGAGAAATGGCAGCGAGTGCCGGTTAACT 3986740 28 100.0 32 ............................ GAGAACAGGGCTTGTCGTGTTAATTTCAGCAT 3986800 28 100.0 32 ............................ TGGGACCGTGGTCCCATCGGGCATCTGTATGC 3986860 28 100.0 32 ............................ ATCAATCAATTTGTGCCGGAAGCCTAATCTCA 3986920 28 100.0 32 ............................ GTGCGCGGGACATTCAGTCCGCTCCGGCGGCG 3986980 28 100.0 32 ............................ ATGCGTCGGCCGGAACCAGAAAATCACTGTCA 3987040 28 92.9 32 ...........GA............... GTTCCGCGCTCAGCGAACAGAGATAGCGTGTG 3987100 28 100.0 32 ............................ AAAAACTACCGACGCACATGAAGGGTGGTACT 3987160 27 78.6 0 ...........CAC.........-..CG | GG [3987181] ========== ====== ====== ====== ============================ ================================= ================== 45 28 99.4 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : GTGACCGAAGTACCGGTGCCAAGCATCACCACGCTGGTATTAGCAATCGGGATATTCCAGTACAACGACTGATTCCCCTCTTCGGTGACATATTCCACCCGCCCGCCATTCACCAAAATACGGCAATGCTGGAGGTAATAAATATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGACGGGCTGAATACGTTATCCATAAAACCGTTTCTCTGTTGTCGTGATAAAGCAAACCCACCCGCGTAATAACACGCAGGCTAATAATTAATTGAAAAACACGTAATACACTGGAAAGTAACGAGAATTAACCTATCACAACCCAAGCGGGAAAGTGAATGACGCCGAAAAGACTTTCCTAATTTTCATACCCTTTTTTTCAGCCGCTATTTTCGATATTGAAAAATCAACAAGTTACCGACAGCCGAAAAAAAAGGGTCTGACAGCGAAAATCGACAATTGCAGGCTGAAATACAACGGGTTAGAGTCAACGAGCTACA # Right flank : GGGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGAGCGGCATGGATGCCGCGAAAGCCTGTGCCGTGCATGGAGCACGTCACATGCGGTCCGAATAGCGAAGGCGAACGCCGAAGGCACCGCGTTAGCGGCGTAGTTTAGCCATCAAGCCAGTGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACTCGGTTTATCCCGCACGAAACCCTCTACCACACTACCCTATACACTACGCCCTTAATCCAACAGCGCTTTCCCCGCTTCAGGGATATTCAGTCAGAACGACGCCCAATCACTATTGCTACCCGCCGCCGCCGTGGCCCGTTTTTCCGGCAGCGCCGGAGATAGCACCGCTGGCTGACGGGCTGGCGGCGTTGTGCCGCTGTGGCCCTGCATCGTCAGGCGAAACGCGCTGACGGCTTCAGCCAGCAAAGAAGCCTGAGACTGCAAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //