Array 1 3676703-3675270 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033360.1 Salmonella enterica subsp. enterica strain EQAS2016S1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3676702 29 100.0 32 ............................. CGCTCCCTGACGCCGCGTTTGTCCCCTGCAGC 3676641 29 100.0 32 ............................. TAGGAATAGCTCAACCCGTTGATTATTTTGCT 3676580 29 100.0 32 ............................. CTAACAGGGTTAAATTTTCATTCACCGACAAC 3676519 29 100.0 32 ............................. CATCCAACAGACGGTTTGATCTTTATTGCTCA 3676458 29 100.0 32 ............................. CGCGGAGATGGCGTTATCACAATGGGCGTAGT 3676397 29 100.0 32 ............................. CCATCAGGCCGGATGCCTTCTTTCGTATGCAC 3676336 29 100.0 32 ............................. GCTACATAGTTGGTCTTCTTTTATCTCACTTC 3676275 29 100.0 32 ............................. CCGGTAAATTTAATGGCGGATTTAATTAAACC 3676214 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 3676153 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 3676092 29 96.6 32 A............................ GGGTTTACTAGTATGAATACCCTGAATTTAAA 3676031 29 100.0 32 ............................. CCCAACGAATCCATTTTTAAATGTCTTCGTAT 3675970 29 100.0 32 ............................. TTAATCCCCACGGCCAGGAGGTATTGATCAAC 3675909 29 100.0 32 ............................. TCTTTCAGGCATTGCGTGAAGAACTTCCTGAA 3675848 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 3675787 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 3675726 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 3675665 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 3675604 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 3675543 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGG 3675482 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 3675421 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 3675360 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 3675299 29 100.0 0 ............................. | A [3675271] ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTCCTCTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGA # Right flank : TTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCTTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGTGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3694271-3693267 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033360.1 Salmonella enterica subsp. enterica strain EQAS2016S1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3694270 29 100.0 32 ............................. TGGATGGTAATCCTGTCGTATCAGGGATGACA 3694209 29 100.0 32 ............................. ATAACGGCCTCGAATTGGCTGTGAACAACCTC 3694148 29 100.0 32 ............................. ATTGGAACAGCATGGGTTGTCTTTGGTTTCGC 3694087 29 100.0 32 ............................. ATCGATGTCTTTTACCGTATACGGCTCGCACG 3694026 29 100.0 32 ............................. CGTCTCATTCATTTCCTGCCCGGTATTTGCAA 3693965 29 100.0 32 ............................. CGTCTAATTGCGCGGCTTGACGAGATGATTGC 3693904 29 100.0 32 ............................. TCGTGCGCAAACCAACTGAGTACGAAGTCAAA 3693843 29 100.0 32 ............................. ATGCCATGTACGCCCCGTTTTTCTCAGCGACC 3693782 29 100.0 32 ............................. TCTGTCAGGCTGGCGATCTGATTAATATTCAG 3693721 29 100.0 32 ............................. CACCCTGGACGACTGGAATAATGATGCACTGC 3693660 29 100.0 32 ............................. GCGAACAGCGACAAGCCGACAGATTTGATTAG 3693599 29 100.0 32 ............................. CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 3693538 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 3693477 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3693416 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3693355 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3693294 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATAGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGTGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //