Array 1 398092-398982 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CAJESH010000002.1 Staphylococcus pseudintermedius isolate 16S06616-1, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
    398092	    36	 100.0	    29	....................................	ATTTTGCTAGAAAAAACTTTAAGAGCTGT  	
    398157	    36	 100.0	    30	....................................	TTGTTATGTTGTTTTGTTGTCATCATTGAT 	
    398223	    36	 100.0	    29	....................................	TTTTCGATGAGTATAAAGCCTTCTGGAAT  	
    398288	    36	 100.0	    30	....................................	GTTTGGCGTGACAATAGTGCAGACGCCTCA 	
    398354	    36	 100.0	    30	....................................	CTAAAACTCATAGCAACTTTAAAGACGAGA 	
    398420	    36	 100.0	    29	....................................	AGAAAATAAGAAGCACAAATTCATATTTT  	
    398485	    36	 100.0	    30	....................................	GCAAATTTTGGTTTTAGCACGATACCATTT 	
    398551	    36	 100.0	    30	....................................	CTCAAGTGGTGCGTTGATGGTTATCTTGAA 	
    398617	    36	 100.0	    31	....................................	AACAAAGAGAGAAGTCCCCCGCGCAAAATGA	
    398684	    36	 100.0	    29	....................................	TTTAATGCTTGTCCGAAGCCTAATGCTAT  	
    398749	    36	 100.0	    30	....................................	GTAAACCATTGTAGCGCTTATCACTATTAT 	
    398815	    36	 100.0	    29	....................................	CACATTGCGTGAACAAATCGAGGGCGTTA  	
    398880	    36	 100.0	    30	....................................	GATGGGAATCCATTTGCAACTGACAGGCGC 	
    398946	    36	  86.1	     0	..........................AC.TC.T...	|                              	C [398979]
==========	======	======	======	====================================	===============================	==================
        14	    36	  99.0	    30	GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC	                               	       

# Left flank :   TTTTAATTATATTATTTCCGGAATCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTCACTAATCATCCTTCTATCATTATTAACGAGGAAAACATATTTCTTTGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTTCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTCGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGGGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTGATAGTGCTAAGCCTCAATTTTGAAAAGGATTGAGTTAATGTTTTTGGATTTGAG
# Right flank :  CCTTCTTTATAATCGTACATCAACCTCACTATGCTTTCAAAATAATTAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAAGATAAATAGAAAGCAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCACATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATG

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:75.00%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.20,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-7] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
//