Array 1 312705-311597 **** Predicted by CRISPRDetect 2.4 *** >NC_018524.1 Nocardiopsis alba ATCC BAA-2165, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================================================================================================================================================== ================== 312704 29 79.3 191 CC.......G......A........GT.. GGCTTCTTGAACGCGATTACGTACTCGTTGGAGCTGCTCCCCGTACACGTGGGGATGGTTGAAGTCGGTGGGGTGTTCGTGAGTGCCGGTGGGCTCTGTGGGGGTGTGGTAGGGGTGGGTGAGGAGCGGAGGTCGCTTCGATCCGAAGGTTGCGGGAAGATAACGGCCCGCATCGTCGCAGGTCATTAAGC 312484 29 100.0 32 ............................. TCGCTCCGGCTCCTGAATGCGTACCTCGTCGA 312423 29 100.0 32 ............................. GTCGCCGACGTCGCCGACGAGGCGCCGGAGGA 312362 29 100.0 32 ............................. GCGCGTGACACCAAAAGTGACAAGATCATTTA 312301 29 100.0 32 ............................. ACGACACCGGCCCCGGAGGCACCTACAGCCGT 312240 29 100.0 32 ............................. GACGCCCCCGCCTTTACCGCCGAGGCCGCCTA 312179 29 100.0 37 ............................. CCAAGGTCCGGCCCGCGCGACGGCACGCCTCGTCATA 312113 29 100.0 32 ............................. CGAACCCGACTACTTCGGCTCTCCCGACCAGA 312052 29 100.0 32 ............................. GAGATCGTCTCCCGCGCCCCCTGGATGAAGAA 311991 29 100.0 32 ............................. TGGGCCGGCTCCGCGTTCGGCGACATGATGGT 311930 29 100.0 32 ............................. CTGACGCATGTACGGAGCTGGCTTTGTGGCTT 311869 29 100.0 32 ............................. GCTCACCCAGAACAGACCCGCCCGGATGAACG 311808 29 100.0 32 ............................. TAGGAGCCGACGATGGAGATGGCCAGCGGCAC 311747 29 100.0 32 ............................. ACCTCGCAGCCGTATTCGACGAGATCAACCGG 311686 29 100.0 32 ............................. CGGGACGGGTGGACCGCGCTGCTGTTGGTGCT 311625 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =============================================================================================================================================================================================== ================== 16 29 98.7 43 GTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : GTACGTGGGGATGGGCCGCGGTCACGATCGCCGGGCCCGTCCAGACGCTCGTGCCGCTGGTCGTCGCGTACCCGTGGCTACGTCTGGAGGCGTAGCCGAACACCGCAGGTCTTCGTCTGCAACCTGCTTCATGTTCAGGACGTCCAACATCCAAAGCGCAGACGACAGACAGGAGGACGTGTGGCCGGGAAGCAAAGAGCAAGTGCAGGCGCAGGGGTGGCGATCGGCCTCGCCCTAGGGATCGCACTCGGGACAGCGTTCGACAATCTGGCGCTCGGCATCGTGGTCGGGGCTCTGCTCGGTGCGGCTGTCGGTGCTGCCGGTGGAGGGCTGAAGGGCAAGCGCGCGACCGACTGACGTGGACGGGTCCGCCTCGCACGCCCCGAAGGCGTGCGGGGCTTTCGTCATGTCCGGAACGAGTCGGTGCGGCCGGGGGCGGGCCCCTGCCCGTCTCTCCACTTCCCCAAGTGCAAGGCGGGCGTCTTGTGGGGGCCGAGGGG # Right flank : GCTCGCCGGATATCAGGGCATACCAGGCCCGCCTGAGCTCCGCATGTGCGGGGATGGGGGTGGGCATGGGGAGGCCCCGGGAACTGGCTTGGGTTCTAGTGGTCGTTGCAACACCCCACCTCTGGAGGGGTGCGATGGGCGACTTCGAGATCCGCAAGGACCGACAACCCCAGGGCCCGGGGAGGCTAACCCGTGAACGAGCGGAATACTTGCGGCTCGTGAAAACGGGGCTGAGTAACACACGAGCCAGCGAGCTCGTAGGGGTCAACCGCAGGACGACAGGGCGGCGCCATCGATCACGATGGCGCCGCCCGCCACGGAACGGTCCCGCTACCTGACCGGCGACGAACGCATCCGGATCGCCGACCTGGACCGCGAAGGCATGGGTGTGCGGACGATCGCCGCCGAGCTGGGCCGAGCTCCCTCCACCATCAGCCGGGGGTTGCGCCGCAACGCCACCGTGGACCAGCGCGGTAGACGGCACTACCGCCCCTATGCCG # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-1.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 2 313460-313186 **** Predicted by CRISPRDetect 2.4 *** >NC_018524.1 Nocardiopsis alba ATCC BAA-2165, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 313459 30 100.0 31 .............................. ACGCCGGCCGTGGCCAGGCCGGGGTGGTGTG 313398 30 100.0 31 .............................. TCACCCTCACCAGGAACGGGCAGTACTCCTC 313337 30 96.7 31 .............................T CCTAGTCAGAGGGGTCAACATGATGCAGGGC 313276 30 96.7 31 ............................G. AAGCCCAGAATCTCCAGTCCGGTGACGACCC 313215 30 73.3 0 ...AG....A..T...T........G..GC | ========== ====== ====== ====== ============================== =============================== ================== 5 30 93.3 31 CTGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : CGGCGACGGTGGCCAAGAAGATCGCTCGCCAGGAGGTGTTGCGAGAGGGGTCGTGCTCGTTCACGTTCCTGCTCACCGAACAGGCGGTGCGGTGGGCGCTGCTGTCTCCTGAGGGGATGGTCGAGCAGGCGGCCCGTCTGGTGGAGGTGTCGCGGTTGGAGCGGGTGCGTCTGGGGGTGATCCCCCTGGGGACCGTGTTGCCCAGGGGGCCGATGAACACCTTCACCGTCTACGACGACAGGTTCGCCACGGTGGAGATCTTCACCGGCCGGCTGGCGTTCCGTGACTCGCGGGATGTGGAGACCTATCGGGAGCTGTTCGCGATGTACGAGGAGCACGCACTGTTCGGAGACCAGGCCCGTGAACGGATCCGCTCCTGGTTCGAGGCCTGAGACAGTGGGTGGTGGTCGGATGAGGGGACGAGTGGTGTCGGTTTTGTCTGTTTCTCGACAACGTGCAGAAATGGCGGGTCTGCTGGAGTAGCGTCGCAGGTCAGGAAG # Right flank : GGTCACGATCGCCGGGCCCGTCCAGACGCTCGTGCCGCTGGTCGTCGCGTACCCGTGGCTACGTCTGGAGGCGTAGCCGAACACCGCAGGTCTTCGTCTGCAACCTGCTTCATGTTCAGGACGTCCAACATCCAAAGCGCAGACGACAGACAGGAGGACGTGTGGCCGGGAAGCAAAGAGCAAGTGCAGGCGCAGGGGTGGCGATCGGCCTCGCCCTAGGGATCGCACTCGGGACAGCGTTCGACAATCTGGCGCTCGGCATCGTGGTCGGGGCTCTGCTCGGTGCGGCTGTCGGTGCTGCCGGTGGAGGGCTGAAGGGCAAGCGCGCGACCGACTGACGTGGACGGGTCCGCCTCGCACGCCCCGAAGGCGTGCGGGGCTTTCGTCATGTCCGGAACGAGTCGGTGCGGCCGGGGGCGGGCCCCTGCCCGTCTCTCCACTTCCCCAAGTGCAAGGCGGGCGTCTTGTGGGGGCCGAGGGGCCGAGCCCCGCGCACGAGG # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 319309-318488 **** Predicted by CRISPRDetect 2.4 *** >NC_018524.1 Nocardiopsis alba ATCC BAA-2165, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 319308 29 100.0 32 ............................. CCGACAGCGGCATCGAGATCTCCCTGCCTAGC 319247 29 100.0 32 ............................. ACGGCCAGGAGGGGGTCCCGGTGGCCACCCCA 319186 29 100.0 32 ............................. TCGCGGTTGAAATGGGGCTAGAGGAATGTGCG 319125 29 100.0 31 ............................. TATGAGGGAGACCCCCCGGATGTCAACCGAT 319065 29 100.0 32 ............................. GCTGCGCCCTGTGCGCGGACCAGCTCTCTCTG 319004 29 100.0 32 ............................. CACCCCGCGCAGCCGCCGCGCGCTCCACAGCC 318943 29 100.0 32 ............................. CCTGATGAAGGGCGGCGCGGAGGGGCAGGGTC 318882 29 100.0 32 ............................. TCCAGGCCGGTGGCTGGAAAGCACGAGAAATA 318821 29 100.0 32 ............................. GCGGCGAGCCGGTCGGCGAAATGGGCGGTCAT 318760 29 100.0 32 ............................. AACGGGACCATCCCGCCCCAGAACTTGATCCG 318699 29 100.0 32 ............................. TGCCCGGCCGTGAGCTCGAAGTGACCTTCGAG 318638 29 93.1 32 ...............T............T AACTCCTTGGGCATCTGCTCACCGCCGCCCGA 318577 29 86.2 31 .........A......T..........GA TGGAGAACTCGACCAGACCGGCCCCCTGGGC G [318551] 318516 29 69.0 0 ...AG....A......T.....C.GGT.G | ========== ====== ====== ====== ============================= ================================ ================== 14 29 96.3 32 CTGCTCCCCGCGCACGCGGGGATGACCCC # Left flank : GGGTGACCCCCGCATTCATCTGAAGCCGATCCGGCGGTTCGGGATGGTCTTCGTTCCGCTGTCCAGGCGGCCGGGTGGCACTCAGGCGTTCAAGATGATCATCCCCGCTCGGAGTGAACCGCTCGAACCGACCCCGCAGACCCACGAGGGTTTCGAGTGGGTGTACGTGCTCGACGGTCGTCTGCGTCTGGTGCTCGGAGAGCGAGACCTGACGTTGTCGCCCGGTGAGGTGGCCGAGTTCGACACGTCCCTGCCGCACTGGCTGGGTAGTGCCGATGGTGGATCGGTCGAGCTTCTCGTTTTGTTCGATCTGCAAGGGGTGCGCGCGCACGTGCGCACCGGTACGGCCTCCGAAGCTTGAACCCCGCTCCTGTTTTTCGCGGGGGTGTCTAGGCTGATGGGAGTGGTGTTCGGGTGGGCGGTCGAGAAGTGCCGGTTTTGTCTGTTTTTCAACAACATGCAGAAATGACGGGTCTGCTGGGGTAACGTCGCAGGTCAGA # Right flank : GGGCTCCGGGCTCAGCCAGTGGTCTCTGCCTGATCCAGGGGTGTGTTCGTGTTCTGTGGGTGGTCGAGCCAGAGGTGGTGTTCACCGGCGGGGGTGATGGTGAGCCCGTAGCGGCCGATCTCAGGACGACCCGCCTCCTCCCAATCGGAGAGGAGGGCGGTGTAGGCCGCCCACAGATGACGATCGCCCCGCTCGCTTACCGTCGTCCGTCCTTGGTGGTCCACCTCCACACGCATCCAGGACCCGGAGGCCCCATCGAGCACCCCGTGCACCTGACCTTCCTGCCGGTGCTGGACCACGCGCAGACCGTAGGGCAACAGAAGCGACAACAAGAACTCCGAAGAAGCATGGTCGTCCAGCCCCGCGACCTTTTCCACCACGCGCACCCGCTCGGGCCCACCCCCGGTCACCGACAGCACCTCCGACACGGTGGGGACCCCCGGAGCGGAAGAGGAGCGTAGGCGCATGAACCCGGCGGCCTCGGGCAGGAGCCGCCCACG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCACGCGGGGATGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 322125-321340 **** Predicted by CRISPRDetect 2.4 *** >NC_018524.1 Nocardiopsis alba ATCC BAA-2165, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================================== ================== 322124 30 100.0 31 .............................. TCTGAAAATCGCATCCTGGGTCCAACATCTG 322063 30 96.7 31 .............................G ACGCTTGATCCAGCCACGGAAAATCGCCGAA 322002 30 100.0 54 .............................. TCGTGGTGTAGGTTTCTATCTCGCTCTGTTCTCCAGCCACGGAAAATCGCCGAA 321918 30 100.0 31 .............................. CCCCCGACACCGGCACCCCCGGCCGCACCCC 321857 30 93.3 31 ............................GG AAACACCGTGGTCATCAACACCACCAAGTTC 321796 30 93.3 31 ............................TT TGGCGGATGCCGTGGCCTCGGCGGCGAACAA 321735 30 96.7 31 .............................C ATCCGGCCTTGTGCGCCCTGTCCCACCTGCG 321674 30 100.0 31 .............................. CTCCCAACTCCGGAAGTTCGGAAGTCCCGAA 321613 30 96.7 31 ..........C................... CCCGAGCGGCCTACGCTCAGGACCGGGCCCA 321552 30 96.7 31 ..........C................... GGTCATCGATGTCGGAGTAGGTCGGTCCGCG 321491 30 96.7 31 ..........C................... CGAAATGATGTACACCCTCGCCCAGGACTCC 321430 30 93.3 31 ..........C..................C GGATCCGGTTGGCCTCCCCGGTCTACACGGT 321369 30 90.0 0 ..........C..............T...T | ========== ====== ====== ====== ============================== ====================================================== ================== 13 30 96.4 33 CTGCTCCCCGTGCACGCGGGGATGGACCCA # Left flank : TGGGCTTCCGACGCGGAGAACGCCCGGGGTTATGAACCGCGACCCGTGGCCGGTCCGTCGGCATGGCGTGCCGAGAGCTGGTGGATCGATCAGGCCGCCGAAGCGGCGGCCAGGGGGTTGACACCTGTTGGTGCCCTTCGTGAGCGCATCGGGATGCCCGAGGATCCCGTCGGGGGACGGCTCGATTCAAGCGACGACGAACTCATTGCTGCCTCGACGAGAGACCTCCGACAGATCGCCAGGCCGACCTGAGCCCCACGCGCGTGGGATGGACCGACCACGACAGTCGACCGCGCCGGACCAGTTCACCTGGGCTCCACCCACGCCGGGGCGATCCCATTTTGTCCAAGCAGCCCCTGAATCTGCCCCCTGTTCCTCGCGAAAATGTCTAGGCTGATGGGAGTGGTGTTCGGGCGGGTGGTTGCGGGATGTCTGGTTTGTCTGTTTTTCAACAACGTGCAGAAATGACGGGTCTGCTGGGGTAGCGTCGCAGGTCAGGA # Right flank : GACACACGTGGTGCGGTGGTCAGGTGTTCTTTTCCGGAGGGCCAGAGGAGGCACCACGGTCAGCGTCCGACCGCTCCATCGATCTGTTCGCGGAGGATGTCGGCGTGGCCCGCGTGGCGGCCGGTCTCCTCGATCATGTGGACCAGGGCCCAGCGGAGGCTGGGCGCGGGGCGGCCCGGTCCCGGTCGGGGGACGGGTGCGCCGAGGTCGGTGCACCCATCGAGCACTCTGTTCGCCCGCTCGACCGTTCGCCGGTAGCGGGCGACGACGTCGGCCCCGCTGTCCGCGGGAGCGGCCTGGAAGGTCGCCTGCCAGTCGGTGACCCGGTCGCCGAGGAACATCGCGTGCTCGACGAAGGTCAGGTGGTGGAGCAGGCCGAGCAGGTTGGTCCCCGAGGGCACTCCGGCCGTTCGGGCCTGCGGCTCGGGGGCGTTCTCGACCTTCGCGGCGATCGAGGTCCGGAGGTAGTCGAGGAACCCGCGTAGGACCTCCGCTTCGCT # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.04, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGTGCACGCGGGGATGGACCCA # Alternate repeat : CTGCTCCCCGCGCACGCGGGGATGGACCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 326898-326503 **** Predicted by CRISPRDetect 2.4 *** >NC_018524.1 Nocardiopsis alba ATCC BAA-2165, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 326897 29 100.0 32 ............................. TGGACCTGGCGTCGTGCCTGCGTCGCCCTCGG 326836 29 100.0 32 ............................. GCGGCGAGTTCGCGCGCGTTGAACAGCTTGTC 326775 29 100.0 32 ............................. GTCCATCCGGTGCCCGCCGGTGAACTCCTTTG 326714 29 100.0 32 ............................. CAGTGCGACGGCCTCTCGGTCGGTGTCCTCAT 326653 29 100.0 32 ............................. GCCCCGCCCCTTTCGGGGGCGGGGCCTTGTGG 326592 29 96.6 32 ............................C TCGCCGCCTACATGAACGTGCTGGAGGACGCC 326531 29 89.7 0 ..........C..........G......A | ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.0 32 CTGAGCCCCATGCACGTGGGGATGGGCCG # Left flank : GGCGCGGCGGTCCCGAACCTATGAGGAGTACGAGACCGCCTTGGCCGCGACGCCCACCTCGGAGATCGACCACGTCGGCCTGGCGTTCTTCGGGCCCCGCAACGCGATCACGAGGCTGACGAAGAGGCTCCCCTGCTGGCTTGAGTCGAGGGCGATCGAGGGGAGGGGCATGGCTCAGGGACGATCGCCCCGGCGGGCCGGTGCCCAGCCGGGTGTCGTAGTTCTGCCCAGGTAGGTCAGTGCCTTTTCCCTGAAGGCGGCCCGCAGTACGTCCATGTCCACTCCCTCGTACGGCCGGTGCGTCGGTCGTCAGTGGACACCGTGTTCCTAGAGCAGGGTCGAGCCCGGGTCCTCACGACTGTGGAGGGGCTGAAGTAGGTGAGGTGTCCTCTCCCGGGTTGCTTCGGGGCGGGTGTGGTAGGGATGAGTGAGGAGCGGAGGCCGCTTCGATCCGGAGGTTGCGGGAAGATAACGGCCTCTGTTTCCGCAGGTCGTTTTCC # Right flank : GATCCGAGCCCGTTAGTGTCGGGGCATGGCCTCTGATCCCACGGAATCCTTCGCCCGTCCCCGTGTTGCCGCCGGCGCCCTGTTCTTCGATGAGCAGGGGCGGGTGATGATGGTGGTCCCCACCTATAAGGACTATCTGGATATCCCCGGCGGCTACATCGAGCATGGGGAGACCCCGAGCCAGGCCGCCGCGCGTGAGGTGAAGGAAGAGCTGGGCATCACCCCGCCTATCGGGCGGCTCTTGGTCGTGGACTGGGCGCCGAACCTCTCCGAGGGAGACAAGCAGCTGTTCGTCTTCGATGGTGGAGTCCTCGATCGGCGGTGGCTCGACCAGATCGCTTTGGACCCGGCTGAGCTGGCCGGCTATGAGTTCCATGAGGTGGCTTCGATCGAGACGGCGACGATCCCGCGGCTCGCTCGCAGGATCGTTCAAGGGGCTCGTGCGCGTCGTGAGGGGACGACGGTCTATCTGGAGAACGGCGAGGCCGTTCAGTAGTTGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAGCCCCATGCACGTGGGGATGGGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 6 1460676-1460035 **** Predicted by CRISPRDetect 2.4 *** >NC_018524.1 Nocardiopsis alba ATCC BAA-2165, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 1460675 30 100.0 31 .............................. CCGGGGTTCCGGTGGGGGTTCCACCCGTTCC 1460614 30 96.7 31 .............................T CCACGATCTTGTCCTTGATCACCCGCGGTAG 1460553 30 96.7 31 .............................G CGTCTACGGCGCAGGTGGTCGACTACCACCG 1460492 30 100.0 32 .............................. AGAACTCGGCGAACGCCGGAATCGGCCTGTGC 1460430 30 96.7 31 .............................G GCACCCGGACCGGCTTACCGCGAGTGGTGAG 1460369 30 96.7 31 .............................T TCATGGACTACATCCGTGAGACCGCTCCGCA 1460308 30 96.7 31 .............................A CGGCAGTCACAACCGGTCACCTGCGGGACCT 1460247 30 100.0 31 .............................. ACCGACCCGAACCCTGAAAGGGCCTGATCGT 1460186 30 100.0 31 .............................. CGGGCCTCGTCACAGGTCAGACGAATCGACC 1460125 30 96.7 31 .............................A CGACCTGAGCGGCCGTGCGATGCCACCCGGT 1460064 30 96.7 0 ............................T. | ========== ====== ====== ====== ============================== ================================ ================== 11 30 97.9 31 CTGCTCCCCGCGCACGCGGGGATGGACCCC # Left flank : TCATCGCCAACGCCCGCGGAGACCTCCTGCTGCATCTGCGTGACGACCTTCCCCATATCGCCTGGCCCGGTCATTGGTCGGTGCTGGGCGGTGGGTGCGATCCGGGTGAGAGCCCACGTGAGGCGATCGTCCGCGAACTGGACGAGGAGGCCGGGCTGGCCGTTGAGGACCTGGTCGAGCTGTTCGAGGTCCCCGATGTTCACGGGTCCGGGCGGCTTCTCACCTTCTACGCCGGAGTGTGGGACGGAGACGCCGAGGCCCTGCCGCTGACCGAGGGGGTCAAGCTCGCCTGGGTCGCCCCCGACCTTCTCGACACCCTGCTGATGCCGCCCTTCATCCGTACCGCTCTCCACCGCTATCTGGCGGATCGTTCCTGACCATGGCGTTGACCTGACCGAAGTCGGCTTCGAACGGGAGGACAAGGGGTGTCGGTTTTGTCTGTTTCTCGACAACATGCAGAAATGACGGGTCGGCCGGGATAACGTTGCAGGTCAGAAAGA # Right flank : GCTCCTGTCCACGTTCATGACAGCCTCTTCCCCTCATCCGTAAGCCAGGTATGCCAACGAAGAGGATCGCGGACGACCTGATGAGGTCGGTGGCCCGGATGCTTTCGGAGGGCACGATCTCGCCCCGGTCGAAGCGCGAACTCGAAGAGGTGTCCTACGCTCGTCGCACGGTTCAACGGCGCTGGAAGGGTTTCCAGAATGGGTGAGCAGCAGGACGTGCGGGCACTGGACTACCTGTACGAGGCCGGTCTCCTCAAACGCTACAAGCGGACCGGCTGGGTCGTTGCCGGTGTCCCTGACCCGGAGTCGATCGCGGATCACTCGCACCGCACCGCTCTCACGGCGGCCGTCATCGCGGAGCTCGAAGGCGCGAACCCGGAGCGCGCCGCGTTTCTGGCCCTGTTCCACGACACCCAGGAGACTCGGCTGACGGACATCCCCTACATCGGGAAGCGGTACCTGAAGGCCTCCAGCAACGCGGAGGTGACCGCGGATCAGAC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 2250995-2251573 **** Predicted by CRISPRDetect 2.4 *** >NC_018524.1 Nocardiopsis alba ATCC BAA-2165, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2250995 29 96.6 32 .....T....................... AGGTTCTCCCCGACCCTCCACAACCTTCCTCT 2251056 29 100.0 32 ............................. GAGGGCAGCCTCGAACCGACCTGGGTGTGCTT 2251117 29 100.0 32 ............................. CGCGGCGGCGCCTGCGCGACCTGCTCAACGAG 2251178 29 93.1 32 .........G......C............ GCCACGATCGACCGGTGCGCCTCGGTCTCTCG 2251239 29 89.7 32 .........G......C...........C TCGTGAGGGTGCTGTTTCGGGATGAGTGAGCC 2251300 29 93.1 32 .........G......C............ ACGTGGCGGATGGCGTCGCGGGCCGCACCGAG 2251361 29 93.1 33 .........G......C............ CTTGAGAAGCTCCCGCGCGACCTGGAGTCCGAG 2251423 29 96.6 32 .........G................... CAGTGTGGGCAGGAGATTACCGAGATCGGCGT 2251484 29 100.0 32 ............................. GCGTACGCGTCCATGTCCTCCACACCACCGCG 2251545 29 89.7 0 .........................CT.T | ========== ====== ====== ====== ============================= ================================= ================== 10 29 95.2 32 CTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : CCGAAGAGCCGAGTCTGTACCTGTTCACGACCGTGACCGACCCGGCCTATCGAGAGCACAGGCCTGGAACCTTGATCGCGTGGTGGGCGGTCGATCAGGCCGCCCGACAGGGGCGTCGGTGGGTGCGGCGGGGATGCTATTTCCCGAAGTTGGCCGAGTACTACGAGTCCCAGGGGTACACCCTGGTCAAGGAGCAGGAACGTAGTGCCGGACATCTGTACCTGCTCGCCCGCCGCGCGGAACGCCTGGATCTCGACGCGCTCGGGCTGACCACCCGATCCCCTGTCTGATTCCTGGGCGGGTGCTTGAGGGGTGCCGGGTTTGTCTGTTTCTCGGTGGCGTGGAAATGGTGGGTGGGGCGGGATGGCTGAAGTCGGCGGGGTGTTGGTGAGTTCTGGTCGGTTCTGTGGGGCTGTGGTAGGGATGAGTGAGAAGCAGAGGCCACCGCCAACCGAAGGTTGCGGGAAGATAACGGCCTCTGTTTCCGCAGGTCATTTTCC # Right flank : TGTTCGCCGACGCCCCCATGGGCCCGCCCGCTGTTCGGGACGGCGGACCATGGGGGCGCCTCTTGCGGCAGAGGATGTGCGTGGGCGTTAGACGCGCTGGAGTCGCTGTTCGGCGGCGAAGTCCTCGCGTTCGACGGCGTGGTGGCGGGCCACGTCACGCCAGTGGTTGTGCCGCACGACCTCCTGCGGATCCTCGATGATCTGGCCTCCGAGGAAGACGGAGGAGTCGTCGAAGTGCATCTTGAGCAGGGTCCGGGAGTCGAACAGCCAGTAGTCGTGCCGGGGGAGCCCGGAGTCTTCGGCCCGGCCACGTTCGAGGTAGCGGATGTCCTCACCCGCGCCGGTGGTGAAGCGCGAGCACCAGACACCGAAGCGGCTGTAGTCGGTGAGCGGGGTACTGACCACACGGACACGGGAGAAGAGACGGCCCGCGGCGGTGGCCTCCCGGATCATGTCGAGCCAGCTCCGCAACCAGGGCAGGTCGTCCGGCTCGTCGGCGA # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : CTGAGCCCCGCGCACGCGGGGATGGACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 8 2254142-2254530 **** Predicted by CRISPRDetect 2.4 *** >NC_018524.1 Nocardiopsis alba ATCC BAA-2165, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================================================================== ================== 2254142 30 100.0 31 .............................. ACTCCCACGTCAACGTCCTGCCACTGTGGGT 2254203 30 100.0 31 .............................. CTCGTCGGGGGCTTTTTCACGCCCTTATTCC 2254264 30 96.7 31 .............................T GCGTCATGTGCTGGCCAGGCCCCGCACGTAC 2254325 30 86.7 85 .........................GA.GT TCCCCCCGAGTAGTGGACATCTCCGACACTGGTAACACGAGGAGGATGGACCCCGGTACCGGCCCGCCCCATGGTGTATGAGGAG 2254440 30 96.7 31 .............................C GACGACGGCAACGCCCTACGCCTAGTCGACG 2254501 30 73.3 0 ........T.......TA...G...GT.AG | ========== ====== ====== ====== ============================== ===================================================================================== ================== 6 30 92.2 42 CTGCTCCCCGCGCACGCGGGGATGGACCCA # Left flank : GGCGACGGTGGCCAAGAAGATCGCCCGTCAGGAGGTGCTGAGAGAGGGGCCGTGCTCGTTCACGTTCCTGCTCACCGAACAGGCGGTGCGGTGGGCGATCCTGCCTCCTGAGGGGATGGCCGAACAGGCGGCCCGTCTGGTGGAAGTCTCGCGGTTGGAGCGGGTGCGGCTGGGGGTGATTCCTCTGGGGGCCGTGTTGCCCAGGGGGCCGAGGAACACCTTCACCGTCTACGACGACAGGCTGGCCACGGTGGAGATCTTCACCGGCCGGCTGGCGTTCCGTGAGCCACTGGATGTGGGGACCTATCGGGAGCTGTTCGCGATGTACGAGGAGCACGCGCTGTTCGGAGACCAGGCCCGTGAACGGATCCGCTCCTGGTTCGAGGTCTGAGACAGTGGGTGGTGGTCGAATGAGGGGTCGAGGGGTGCCGGTTTTGTCTGTTTCTCGACAACGTGCAGAAATGACGGGTCGGTCGGGATAGCGTTGCAGGTCAGGAAGA # Right flank : GTCGCAGCTTCTATGGGTACTCCCGGGCAGGGCTGCACGCTATGCGGATGGGGAGCCGGGGACGTTGGGTATCAGGAACGAGGAGGGTGGAAATTCGGAAAAGGAAGAACAGGGCACCCTTCTCGAGGAATCGTAACGGTGGTTTCGAACGCTACTGAGGGTGCCCTGGTTCATCCGTTCAGTCCGGTCGATAGAGTGCCCGAAGCCCTAGCCATTCTTTGGGCATCGGTTGCAGTGCTGCTATCGTCCGTCGTCGATTTCGGGGCTGCAAGTCTTACAGAGCCGGTAGTTTCGTCCACCTTTCGGGCCTGTCCGCTCCGACATCCACACATGCGTCTCGTGTCGAGTGGATGGTAGGGCGCCAACCATGACATCCCCCTCGATGTGGGCAAATGTACGCAGGTCAATGGGTTTGTGCTGCAATGAGTAAGGTGCTGGTGTGACGATTCCGCAATCGGATCGGTGCACCGTGCTCTTCGTCATCGCGAACGGATAGCGGT # Questionable array : NO Score: 4.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:-0.92, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 9 2268230-2268686 **** Predicted by CRISPRDetect 2.4 *** >NC_018524.1 Nocardiopsis alba ATCC BAA-2165, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2268230 29 100.0 33 ............................. GATGGGAGTACCTCCTCCAGGGACGCGCCTGGC 2268292 29 96.6 32 ............................C CCGATTCGCCGCCGTGGCCGCCACACTCACCG 2268353 29 100.0 32 ............................. GCGCACCCGGACCTCACCAAGGAGTTCACCCG 2268414 29 100.0 32 ............................. GACTATGGTCCCATTCAGGCCGCTCGGGCCAC 2268475 29 100.0 32 ............................. AGGTCTCTTCATTCAACGTTCGCGTAGTGCCC 2268536 29 100.0 32 ............................. AACACCGGTCTCGCGACCGGAGACGAGGTCAT 2268597 29 93.1 32 C..C......................... GTCGAGACGGTCCGGCACGAGGTCGAACACAA 2268658 29 82.8 0 C...G.......T.T..........G... | ========== ====== ====== ====== ============================= ================================= ================== 8 29 96.6 32 GTGAACCCCACGCACGTGGGGATGGACCG # Left flank : GTGGTGGGCGCGGGCGGCCGCGGACGTGCTCGGAACCGACACGGGGCCGAAGAGGATGAAACTCTCCGATCATTTCCCGGCGGAGAGAGCGGCCGAGGCGGTGGGTGTTCACTTCGCCGAGGTCGATGTCATCGCTTTGGACGGAGTGATCGAGGTCGATACCCCGGCCCCGATCTTGGATCACTACGCCTCTTACCAGGCCTGGTCCGAGGGGACGGGGGTGCCCTTCGAAGCCACTCTGGAACGGGTCTCGTCCGTGTTGAGCGCGCGGTTGAAAGATGGTCCACTGCGGATCACCACACGCCAAGCGCTGATCATCGGTCGCCGTTCTCTCACGCATGGGCCGCAGCCCACGACGGGGCGGTAGGCAATGCCGGTGGGGTGTTGGTGAGTTCTGGTCGGTTCTGTGGGGCTGTGGTAGGGATGGGTGAGGAGCGGAGGCCGCTTCGTGGTGAAGGTTGCGGGAAGATAACGTCTCGCATCGTCCCAGGTCATTAAGT # Right flank : GGGGCATGGGGGCACCCGGTTCTCGTTCGGTGCAGGGGTGACCGGGTTCGGCCAGTTGTCCGTACACGGCCTGTGGCCGGCTACGGTCGCACCATGGCCAAAGCCCCCTCTCCCCCTCGACCGCCCCGGCTCGAACGTCTCAAGGAATCAGTCACCCGGCTGAACGAACGATTCGGCCGGGTACGCCGTGGACTGTCCTGGACCGCGATCATCGTCGGTGGTCTCGGGGCGGCCGTGGCGTTGTGGCCCCTGGCCACGGCGGTCTGGGACCTGCTCGGCTTCACCACGGGCCAGACCTGGCGCGTGGCCGCAGTGGGGGTATGCGCTCTGGTTCTGGCCACCGGCGTCGTGGGGGTGAACTGGAAGCGCACCACTCCGGTGCGGTTGGTCTGGTTGATCCTGGTCGCCTGGGCGCTCGCCGTGGGCATGGTCGCGGGCATGACCATCCTGGCCTGGCTGGTGCTCGACTCGCCTCAGTGGAAGCCGCCCGAGGCGCTCAC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 10 2270308-2271184 **** Predicted by CRISPRDetect 2.4 *** >NC_018524.1 Nocardiopsis alba ATCC BAA-2165, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 2270308 30 80.0 31 ...AG....A....T.T............G GCTCGTTGAAGGCGATCGTGTACTCGTTGGA 2270369 30 100.0 31 .............................. CCAGGAGGCCGAGACAGCTACCGTTCCCCGA 2270430 30 93.3 31 .........................C...G AGCACAGCGACGGCACCGCCAACGGCTGGTG 2270491 30 93.3 31 ......................G......C CGTGGCACCACTGCTGTCCGCAGCTACACAC 2270552 29 93.3 32 .......................-.....C GTCTCGGCAGACGGGGACAGCGAGGGCTACCA 2270613 30 93.3 31 .........................C...C GGTGCCCTCTTCGGGGGCAGGGCCGGTGTTA 2270674 30 96.7 31 .............................A AGGACGTGCGACGTGCGAAGCACGCTGTTGT 2270735 30 96.7 31 .............................G GACCGCTACGGGACGCCCACCTATGGACCGA 2270796 30 100.0 31 .............................. GTTGTTCTCCCGCCTCGGACGCCTCCCGGTC 2270857 30 90.0 31 ................T...........GC GCTGGACGGCGATCGGCAGTCGCTGCCGTCT 2270918 30 76.7 31 ...AG....A..T...T........G..G. ACCGGTCCCGTAGACGCCGGTAGGTCTCCGC 2270979 30 86.7 31 ...AG....A......T............. CGATCGCGTGGAACCCCGGGACGTCCTTGAT 2271040 30 93.3 24 ...T........................G. CGGCGATCCGGCGGTACGCGGTCG Deletion [2271094] 2271094 30 80.0 31 G..AG....A....T.T............. CCCTGGCGAGGGTGTCGAAGACACGGACCCT 2271155 30 63.3 0 .........AT...T.T....T..TTTTTG | ========== ====== ====== ====== ============================== ================================ ================== 15 30 89.1 31 CTGCTCCCCGCGCACGCGGGGATGGACCCT # Left flank : AGGGTGTCCTTCGACTGGGCTGAGTTCTCCAGCGGGAAGGTGTTCTTCAGTTGGGCCGAGTTCTCCGGCGGGTTGGTGTCCTTTTTCGGGGCCGAGTTCTCCGGCGGGTTGGTGTCCTTCGACTGGGCTGAGTTCTCCGGCGGGTTGGTGACCTTCGCTAAGGCTAAGTTCTCTGACGGGGAGGTGCTCTTCGATGGGACTGAGTTCTCCGGCGGGACAGTGCTCTTCAGCTGGGCCGAGTTCTCCGGAGAGAGGATGTCCTTCGACAGGGCTGAGTTCTCTGGTGGGCAAGTGGTCTTCGACAACGCCTCAGGTACGTGCCCCAAGGGGCTTCTGGAAGAGATGGGGCGTCCCAGGGTGGTGTTGCCTGAGCAGTGGCGGAGGGCTTCTGACGGTAGCGGTGAGGAGGAGGCCTCAGAGATGCCTACTGATGTACCCGACCACTGACATGGTCGTATCCGCTGTTATCTTCGCGACCGTTAACACCTCGGTAGTACAGG # Right flank : GGGAGTGGGGCGGCCCCGGGAGCTGGTGCTTCCGGGGCCTGGTTGGCTTTGGGGGTTATCGGGAGAGGGTGGCGAGGAAGGCCGCCCACTCGCTGGTGGGGAAGGGCAGGTGGCCGTCCGACCTTCGCTTGGTGTCGCGGATGGCGGAGGTGCCGGGGGTGTCGGCGACCTCGACGCATGCGGACTCGTTCGCGCTGTAGCTGGATTTGCGGAAGTTCAGGGGGTGGGTGGTCTCAGGCATGGTGGGCCTCCGTGCGGCGAGCAGTGGTGAGGAGGGCGGTCCATTCGCTGCTGCTGAAGGTGAGGTGTCCTGAGCCGGGGCTCTGGGAGTCACGGACAGCGGAGGCGCCAGGAACGTCGGCGACCTCGACGCAGTTCTGTCCGTGGGAGCTGCTGTAACTGGACTTGCGGAAGGTGAGGGCTTCGGCCTGGGGGAGGGGCATCGTCCATCGCTCCTGAGTCGGGTGCTGGGGGAGCCTCAGGGTAACCCGTGGGTTCAG # Questionable array : NO Score: 4.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-27] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 11 4582146-4583150 **** Predicted by CRISPRDetect 2.4 *** >NC_018524.1 Nocardiopsis alba ATCC BAA-2165, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4582146 29 100.0 32 ............................. ACTAAGAGCATTTGGAATGTCCCTGGATTCGG 4582207 29 100.0 32 ............................. ACACGGTGACTGGGCAGGGCTCTGCCCTGGTC 4582268 29 100.0 32 ............................. GTGACGGTGTGTAACGTCCACTCCGTCCAGTC 4582329 29 96.6 32 ............................T CCACGTGCGGTGGCCAGCTCCTCCCAGTTCGA 4582390 29 96.6 32 ............................T CTGTGGGCTTGACCAGCAGGCCCTTGAAGATC 4582451 29 100.0 32 ............................. AACTTCTCCAGCTCCTTGTGAGCGCTCTCCCG 4582512 29 96.6 32 ............................T GTCGAGTGCCGTGGCCTCACGGTCGTCGGCGA 4582573 29 100.0 32 ............................. GTGCTTGGACACCTTCATGGCCTTCCGGGCGA 4582634 29 100.0 32 ............................. GGCTCGTCGACACACGTCAGCAGGGCAGCACG 4582695 29 100.0 32 ............................. GTGGCGTTCTTGGTTTCTCTGAGCAACACCAC 4582756 29 100.0 32 ............................. GTGCTTGCCTGGACGCACCCTCGCCTCCGAGC 4582817 29 100.0 32 ............................. GAACGACGGCCGGGTCGTCGTGGTCCTGGCCG 4582878 29 100.0 32 ............................. CAGGGGCAGTACGAGGAACTGACCCGCATCAT 4582939 29 100.0 32 ............................. CCTTGTGCCAGGTCGCGGCGGTGGTGAGTGAC 4583000 29 96.6 31 ...........A................. ACCGATTTACCGGCCCCGAACCCATCGACAA 4583060 29 93.1 32 ..........G..G............... GACTGACCGTGATCCAGTTCGGGATCCGGGTC 4583121 29 93.1 0 .........................C..T | T [4583143] ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.4 32 CTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : CCGGGTGAGTGAGTGGATCCACCGCCGCTGGATCGCGGGCCCGGGGGGCGAGACCTCCGGCGCCTGAGCCCGGCGACAGGACCCTTGCCCACCCCTAGGAGGTCTGGTGAGGGGAAGAGCCCACAGCGCAGTGAAGGCCGGCGCGCCCAGGGGTGGGCCGAGGAACTGGTTGTTCAAGGAGTACGAGACGAGCGCTCGAGGGAACGATGGGTTTTCAGAGGCTGCCCGGAGTGAGACGTCTCAGGGGTCGGACTGGTGACCGGCATCCTTGCCGGTGCCCCCACGGTCTTCGCTGTCCCGCCGTCGAAGTACGGATGGCCGCCCTCCACGCCCGCGGCGGGTGGCGGGGCGGCGGAGCTCTGGGGGAGTGATGAGCCGGTGAGATGCGCTCTCACGGGTCGGTTCGAGGTGGGTGTGGTAGGGATGAGTGAGGGGCGGAGGCTGCTTCCGGGTGAAGATTGCGGGAAGATAACGGCTTGCGTTTGTGCAGGTCATTTTCC # Right flank : TCCGCCAGGTGCACTCTCAACGGCTGTAGACACCGACCAAGGACCCGCCGATCCGGAGCCCCCTGCGTGACCACGACCGGTCAGCGCTTGTGGCAGGTCTTCAAGTAGCCGAGGAACGACGCCTGCAGGCCGGTGACGTGCGTTTCTCGCAACAAGGCCTTCGAAACGTGCTCCGCCCATCCCTTGGCGTGCAGTCGTTCCACCGCCGTAAGAACGTTGCGGGACATTCCGCGGTAGAACGGAACGTCTCCCAGCAGCTCGGCCTCGTTCAGCGTGATGTGCAGCCGTGAGCCGACCGAGCCCTCGCCGGGTTCCGGTAGGGCGTCGATGAGGGTGAAGATCCGGCTGTCCGAGCCTGCGACGCCGGGGCTGCCCGCGCCGAAGCTCGCGAAGGGCGCCGCCTCGCGCAGCCATGCGTAGAGGGCGAAGAGTCCCCCGTAGGAGTAGCCGAAGAGGCCGTGCCCGGACTCGCCGACCCGCAGCCTCGACCGCAGGTGCGG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 12 4591312-4592151 **** Predicted by CRISPRDetect 2.4 *** >NC_018524.1 Nocardiopsis alba ATCC BAA-2165, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================================================================================================= ================== 4591312 29 75.9 26 ...AG.TT....T...T....C....... GCCACAAAAGGTCCTCCGAGTCTTGC 4591367 29 72.4 167 .....T..T...TG....A..GC..T... ATCCTGCTCGGGATGGTCACGGAAACCCATCTCTGCTTTTCTCGGGGTTGTTTAGGCTGTTGGGCAGTGATGTTCGGTTGGACGGTTGAGGGGTGTCGGTTTTGTCTGTTTCTCGACAACGTGCAGAAATGGTGGCTGGGCCGGGATAGCGTTGCAGGTCAGGAAGA 4591563 29 100.0 40 ............................. ATCTTGATGGGCGTCGCGTGCCGGTCGGCGTCAGCGATCC 4591632 29 100.0 33 ............................. ATCGCCGACCAGAACCTCAAGTACACCGGAGTC 4591694 29 100.0 33 ............................. CGTTTCCCTAGGGGTCTAGGGAAATAACTTGGG 4591756 29 100.0 33 ............................. CCCCGAAAAGGGGGTGCTGGAATTTCCCTCTCG 4591818 29 100.0 32 ............................. ACCGACTTGCCGGTGAACGCCCCGTCGGGGCC 4591879 29 100.0 32 ............................. CGGGAAATAACGGTGATCTTCGACGAGTACTC 4591940 29 100.0 32 ............................. GCGTAGGTGGTCAGCTCTGCGTCGGGGTCGGC 4592001 29 100.0 32 ............................. ACAAAGGCCTCCCCCAGCTTCTTGATCTGTCG 4592062 29 100.0 32 ............................. GCTCGTCGAAGGCGGGGTTCGCGCCAACGACC 4592123 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================================================================================================================================================= ================== 12 29 95.7 45 CTGCTCCCCGCGCACGCGGGGATGACCCC # Left flank : CCGCGGTCGTACTGGAGGAACTGGAGTCCTTGGCCGGTGAACTCGGCGACGGAATACCTGTGGTCTCTCACGGGGACTTCTGTCTTCCCAACGTGCTGATAGACGAGACCGGCACGGCGGGGCTCGTGGACGTGGGCCGCGCGGGCCTGGCCGATCCGCACTCCGACCTCGCGGACATGACACGCAGCCTGCGCAGCCACATGAACCCCCAATACGGCGAGGTGTCGGCGCACAGGTTCCTCGATGCGTACGGCCGGGACGGGATCGACCCCGAACGGCTGCGGTTGCACGACCTGCTGGAGAGCTTCTTCTGGCCGGTACCCGAAGCGCATACACCCGGCGGCTAGAACGAAGGTCAGAGCCCTCCACACATTCCCTTCGCCGAGTCGGGTCCGCCTGGGTAGTCGGGTGAGCCGATCCACCAGGTGGCCCCAGGAAGTAGTGACCGGGCCGTGCTGAGACGGGAAGACGGGTCCGGGACGCGTACTGAACAGCCGCCG # Right flank : CGTCGACGAGGAGGGACGTTCCCCCCGAGTAGTGGACATCTCCGACACTGGTAACACGAGGAGGAGTCCACCCCATGGCCATGAAGCACTACCCACCCGAGTTCAAAGCCGACGCCATCGCCCTGTACCGGTCCCGCCCCGGCGCGACGATCGCTCAGATCGCCACCGAACTCGGTATCAACCGCGAGACCCTGCGCAGCTGGATCCGCAAAGACGACGACCAACGTTCCGCGCAGGCATCCGCACCCACCCGGGCCCGAACCGGTACTCCAGCCCCCAGGGAAAACCTGGAAGAAGAGAACAAGCGACTCCGCGCCAAGGTCGCCGAGCTCACCACCGAACGCGAGATCCTGCGCAAGGCAGCCGCCTATTTCGCACAGGAGATGAGACCGTGAGCCGCTTCGGTTTCATCCAGGACCACTCCAGCGCCTTTAGCGTCAAGCGGCTGTGCCAGGTGCTGGGCCTGGCCCGCTCCTCCTACTACGCCTGGAAAAAGGCCA # Questionable array : NO Score: 4.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-1.20, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCACGCGGGGATGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 13 4593160-4593367 **** Predicted by CRISPRDetect 2.4 *** >NC_018524.1 Nocardiopsis alba ATCC BAA-2165, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ==================================== ================== 4593160 25 100.0 36 ......................... CCCCGCTATGGCCGCCATTCTCGCGGCCGCTGGGAT 4593221 25 100.0 36 ......................... CCCCGCGGGGGGCTTGAACGAAGGCCTTGCGCAGAG 4593282 25 100.0 36 ......................... CCCGACGAGGACGCCGGCCGAGGTCTTGCAACACAA 4593343 25 84.0 0 .............CT........CC | ========== ====== ====== ====== ========================= ==================================== ================== 4 25 96.0 36 CTGCTCCCCGCGCACGCGGGGATGA # Left flank : GCGCCGAGCGGGCCCGTCGCGACGCGGAACTGACCGAGGCCATCCGCGGCCGAGCACATGCGCACGTCCCTGATCGTCGATGCCCTGCGCGCGGCCCAGGCCGAGCGCGGCTGCCTGTCCGGGGCCATCTTCCACTCCGACCACGGCGCCCAATACACCTCAGCGGCCTTCGCCCGGGTGTGTGAACAGCTCGGGGTGGTCCAGTCGATGGGGGCTGTGGGCTCCTCGGCCGACAACGCCGCCGCGGAGTCCTTCAACGCCAGCCTCAAACGCGAGACGTTGGAGGGAAAGGGCCTCAAACGCTGGAAGAGCGTCAAGCACGCCCGTCTGGCGGTGTTCGCCTGGATCAACCGGTACAACACCCGACGCAGGCACTCAGCGAACGGGCAGCTCAGCCCGCTCATCTACGAGCAGAGAACAGCTAGCCTGGAGCTCGCTGCCTAAACATCAGGTGTCCACACTCATGGGGGAACGCCCGAGGTCGTCCGCTGCCGAGGGTG # Right flank : CCCCCTCGCTTCTATGGGCGCCGGGTCAGCGGTGTTCGAGGGTCGGCCAACCGGCGATGGTGATCATGGTGAGTCCGGTGGCGCGGTCGAACAGGCGGTGCACGCGAGCCGTTGACGTGGCCTACCGCCCCATCTCAGCCTCCCCGCGGGTCGAGGCCGATCGAGGGCCTCACTCGCCCCGACCGTGCACCGGTCTGGCGTTCGCCGGCGGTTCTCCGACCTCGTGGACGGTGCGGCCGCTACAGGCCGTCTTGGTGACCGTGGCCTGTTCGATGCGCGACACGGCGAACCAGCGCATCGCGTCGCGCAGTCGGCACCACCCGATCAGGTACCACCGGCCGTTCGTGGAGGCGAACAGCACGGGTTCGACGTCGCGGGTGGTCGCGGTGCCCTCCCGCGATGCGTAGCGAATGCGGATCACCCGCTGTTCGGTCATCGCCTCCTCCAACGCCGACCTGGTGGCGCGCGAGGATGAGGGAGGCGCGTCGACCCAGACGCGG # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 14 4595159-4595625 **** Predicted by CRISPRDetect 2.4 *** >NC_018524.1 Nocardiopsis alba ATCC BAA-2165, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================================================================================================================================== ================== 4595159 29 72.4 166 .....T.....T..T.T.....GA.T..A TCCTGTTCGGGACGGTCACCGAAACCTCTCTGCTTTTCTCGGGGGGTGTCTAGGCTGTTGAGGGAGTGGTGTTCGGATGAGTGGCCGAAGGGTGTCTGTTTTGTCTGTTTCTCAACAACTTGCAGAAATGGCGGGTTGGCTGGGATAACGTTGCAGGTCAGGAAGA 4595354 29 100.0 32 ............................. CGCCGTGTGTGGGCCGCGCTCGGCCCGATCCG 4595415 29 93.1 31 ........................AC... CCCACGACGAGCGAAGTCCCCGTGCAGGTGC 4595475 29 93.1 32 ........................AC... GCTACGCGGAACCTCGCGCACATCTGATGTGT 4595536 29 100.0 32 ............................. GTCGCCAAGCTGGATGCCAGCCGCCACGCGGT 4595597 29 89.7 0 ............T............G..G | ========== ====== ====== ====== ============================= ====================================================================================================================================================================== ================== 6 29 91.4 59 CTGCTCCCCGCGCACGCGGGGATGGACCC # Left flank : GCCTTCGCTCCGGACTTCCCGGAGGAGGTGGAGGAGCTTCCCCTCCCGCCCTTCGACGTCCTCGCGGAGCAGGCGAGCCTCGACGGCCTGAGCACGGAGGTCCTTGAGCGTTTCCGTTCCAGGGCGGTTCCCGAGCCCGGTCCGGTGCTCCGCCAGACCGTCGAGCTCACAAATGATGCCCGCCGCACAGTTCCGACGACCTTGGTGTGCTGCTCGATCTCGAGTGAGCAGGTCCTGGAGATGGCACAAGGAGGGCATCCCATGTTCGCCGAGGTCGCGAACCTCGAAACCCTCGACATCATCGATCTCCCGACGGGCCATTGGCCTATGTGGAGCCGTCCCGGCGACCTCGCCGAGGTCATTCGGTCGGCGGCGTCGCGGGCCGGCTGAACCGTGCGTGCGACCTGAAAGGGCCGGTCAGTGTGGGGTGCGAGTCGACCACCGCCGATCGAGCCTCATGCACGTGAGGGGGGCCTCGCCACAGTATGTTCGGGTCCCGC # Right flank : GTAATTCAGGTCCTTGGTCTTGGGCTCGGGCGTTCCGCGGCGATCCAAGTCCGACACAGGTGCGAGTGGGGCCGTAAGATCCCGACGACAGCCAGGGTGGGGCATAGTCCACCCCACCTCGCCCCACCCGGCCTTCCGGCTCGCCGGTGCCTACACTTGAGCGGTGGCGCAGCAGCCGGACGCCTCACCGGCGACACCGGTGTTGACCTCCCGGGGCGCCGCTCCCCTCTGGTCGCTGTCGCTCTTGACCACGTAGACCTCCCAGGGCTCCTTGCCGGGGCCGTGGACCCACACCTTGTCCTGCACGGCGTAGCAGCACGAGGTGTCGTTCTCCTCGAACGTGGCCAGGCCGGAGTCCTTGAAGCGCTGGGTGGCGGCGTTCACCTGCTCGGTCGCCTCGACCTCCACGCCGAGGTGGTCCAGGCGGGTCTCCTGGTCGGGCTCGCCTTCGATGAGGACGAGCTTGAGCGGGGGCTCGGAGATGGCGAAGTTGGCGTAGC # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:-2.94, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.15 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 15 4598345-4599632 **** Predicted by CRISPRDetect 2.4 *** >NC_018524.1 Nocardiopsis alba ATCC BAA-2165, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================================= ================== 4598345 29 72.4 169 ...AG....A....G.T..A.G...A... ATCTCATCCGGGACGGCCACCGGAATCTCATCCCTGTTTTTCGTGGGGGTGTCTAGGGTGGTTGGGGAGTGGTGTTCGGATGGGTGGTTGAGGGGTGTCTGTTTTGTCTGTTTCTCAACAACGTGCAGAAATGGCGGGTTGGCCGGGATAGCGTTGCAGGTCAGGAAGA 4598543 29 100.0 32 ............................. CGTAGGTGAGGCGTCCGGCCGTCGGGCGCCTC 4598604 29 100.0 32 ............................. TTGTTCGCCTGCTCGGCGGTGAGCTTCACGAC 4598665 29 100.0 32 ............................. CGACAGAAACGACAGGAACCAGATGAACCCTC 4598726 29 100.0 32 ............................. GACCCCGCGTTCACCGATGCCGTGACCGATTG 4598787 29 96.6 32 ............................T CGGTAGTGTCCGCCGTCTCCCGGGGGGTGGCT 4598848 29 100.0 32 ............................. CACCAGACGCCGTGCTCGTCCGGCTGGCCGAA 4598909 29 93.1 32 ........................GA... GGCGGCAGGCCGGTACGGTGCCGCCATGGATC 4598970 29 93.1 32 ........................GA... CGCGTTCGCGGCTGGACACGCTCACGATCATC 4599031 29 93.1 32 ........................GA... CAGGCCCTGGAGGACAGCCGGTCCGCCCGCGC 4599092 29 93.1 32 ........................GA... AAGCCCTACAAGCTCTCGGTGTCATGGCTGCC 4599153 29 93.1 32 ........................GA... ACGGAGCTCGTCGAGCTCGACATCGCGGGCTC 4599214 29 96.6 32 ............................G ACCTCGAACTCGCGGCGCTCGCGGCCGTCACG 4599275 29 100.0 33 ............................. GACCTCACCAGGAAGGACCACCACTGATGAGCC 4599337 29 100.0 32 ............................. TGGGGTGAGATCCTCCCGTCCTAGTCAGGATG 4599398 29 100.0 32 ............................. CTCAGAGCAGCGGTACCAAACCTGAGCACCGA 4599459 29 100.0 55 ............................. GCCCGTCCGGTCAGGGCGCTCCTTCCGCACGGGGCACCGGCCCGTGACCATCAAA 4599543 29 96.6 32 ............................G TGGAGCGTCCGGTGCGGGGGTCTACGCGACGC 4599604 29 86.2 0 ........................GA.TG | ========== ====== ====== ====== ============================= ========================================================================================================================================================================= ================== 19 29 95.5 41 CTGCTCCCCGCGCACGCGGGGATGACCCC # Left flank : TTCGTGTGCGTGCACAACGCCGGACGGTCCCAGATGGCCGCCGCCTTCCTGGAACACCTGGGTGGCGACCGGGTCGAGGTGCGCTCGGCCGGCTCCGCCCCGGCCGACGAGGTCAACCCGGCGGTGGTGGAGGCGATGGGCGAGGTCGGGATCGACATCACGGCCGGTACCCCGAAGCTCCTCACCCCGGACGCGGTCCGCGCGTCGGACGTAGTCGTCACGATGGGCTGTGGCGACGCGTGCCCGTTCTTTCCCGGAAAGCGTTACCTCGACTGGGAGCTGCCCGACCCCGCAGGGCGGGGTGTCGAGGCGGTCCGGCCGATCCTTGACCGGATCAAGCGGCACGTGGAGGATCTCTTGCGGGAGCTTGTTCCGTAGGCGGCTGGTGTCTTCCCTGGTCGCGGTGGCCTACGACCGATGCGCGCTGTCGAGGTGGGCGCGGGGGTAGGCCACGCGACACAGGGGCCGAGGGTGACTCCTGCTGCCACGGTGATGTGCCC # Right flank : GCGTTGAGCCCCCACGCGCACCAAACTCCCCAACTGCTTCCCACACACATATCCACGGTCCTCGGAGGGCCGTTCATGTTTATCCGTGACCTCTGTCTGTGCTGGCTTCATCAACAGGACTGTTCCAAGGAGACTGCCCCCGTCTCCACACCACGTCCGGTCACGTAGGTTCGGCGCATGGGACACACGGAGAGCTCCGAGGACGATAACGGTCGTTGGATCGTTCACGGTGAACGCGCCATCTACGACAGCCGGTGGGTGCGGTTGGGCAAAGCGGACATCACCACACCTTCGGGGAGCCGGTTCGAGCACCACACGGTCACCTTGCCCTCGGCCGCGGTGATCGCCATCGTGGACCGGGCCGGTGAGCATGTTCTGATGAGCTACCGGCACCGGTTCGTGCCCGATGCTTGGGGGTGGGAGCTACCCGGCGGGCTTTTGGATCCCGAGGAGACTCCGGAGCAGACGGCCGTGCGCGAGGCCTTGGAGGAGACCGGCCA # Questionable array : NO Score: 5.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.74, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.42 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 16 4608629-4608903 **** Predicted by CRISPRDetect 2.4 *** >NC_018524.1 Nocardiopsis alba ATCC BAA-2165, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4608629 29 100.0 32 ............................. CCACCGCCCGGGAGGCCGCCCACCGGGCCGCA 4608690 29 100.0 33 ............................. GGTCGTAGCCTACCGACGCTGCCGAGCCCCGGA 4608752 29 100.0 32 ............................. TCGGGCTGAGCGAGCTCTTCCGTTGGAGTGAA 4608813 29 100.0 32 ............................. CCGGAACCGGCACGAGCACCTGCTCCGGTTCC 4608874 29 100.0 0 ............................. | A [4608898] ========== ====== ====== ====== ============================= ================================= ================== 5 29 100.0 32 GTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : GCTGCTCTCGTTGGTTCTTCGGTGTGGTTAGAGCCGATCATGGCCATGACCCTTTCCGGCCGGCGTGGTTTCCCGCTGGAGGTCGTGGATAAACCCTTGGGGAGTGGGCGTGTCGAACGTCTACCTGGAAAGGAGATGGCTATGCACAGATCTAAAGGTGGTCCGTCGGTCGGGGTGGGGCATCCTGTGGAGCCCTTGGAGGTTCCGCCTGAACCGGAGCCGCAAGAGCCTGGAACCGAACGTAAACCGGAGAAATGACCCTCCCGGAGCGGCTCCCGGCTCTGTGAGGTGAGTCAGAGTGCACGAATGAGTACGGGGTGGCCATAGCCACACCTTGTGATGGTGGCATCCGCTGGGAGATCCAGGAATCGCGGAGTTCCACAGCCGTCTTCTGCCCCGAAAGAATTGAGGCCTCGGATCGGAGACCTCTATCATCACCGCGACGCACGACACCAAGGTCAAGCGGAGATAACGGCCCGCGTCATCGCAGGTCATCAAGC # Right flank : GTGTGCACGTCCCGGACCGGCGTGTATCCAGGCTGCTCCCCGCGTAGCGGGGATGGGGGAGGCTCCGGGAGCTGGTGCTTCCGGAGCCTCGTCGGTTCTGGTGGTCAGCGGGTGCGGAGCGCGTGGAGCAGGGCGGTCCATTCCGCGTTCGGGAGGCTGAGTTCGGCGAGGTGGCGGTGTTGGGTGTCGCGGATGGCGGCGCCCTGGGCGGTGGCGCGGGCTTCGACGCAGCTTCCGCTGCCTCCGCTGTAGGTGGACTTCTTCCAGTGTTCGTTCATCATGTCGCGCTGCCTCGATCTCTCAGAGGGGGTGGAGAGTGCTCGTCGGCGAAGGTCCCGCTGGGGGAAGACTCTTCGTTCCGCGGTAGGACTGTCGGGGGATCAGTTCGTGCGGAGGGTGCTGAGCAGGGCGGTCCATTCGGAGCCGGAGATGCTGAGCTGGGCCTGGGCGCGGTTCTGGGTGTCTCGGACGCCGGTGGTCGGGCCTTCGGCGACTTCGAC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 17 4637701-4638156 **** Predicted by CRISPRDetect 2.4 *** >NC_018524.1 Nocardiopsis alba ATCC BAA-2165, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4637701 29 96.6 32 ....................T........ CTCCTCTTCCGAGTAGGCGGGCCAATTCGCGC 4637762 29 100.0 32 ............................. GAGGGCAGTCGATGATGATCTCGTCGAACTCT 4637823 29 100.0 32 ............................. CCTCGGGGCCGGCGGTGATCGCCCCGGCCCGC 4637884 29 100.0 32 ............................. CCCGGGACGTGGCGCACGTGGTAGCTAATCTG 4637945 29 96.6 32 .....................G....... TCGTGGTACATCAGCTCCCCGCTCACCTCCAG 4638006 29 96.6 32 ........................A.... CAACGTGCTGTTGTAGTTCAGCTCGGCGTTGA 4638067 29 100.0 32 ............................. GTCACACCGATGTTCTCTCGGCCGGCCTGGTA 4638128 29 79.3 0 G...........T...........CCGG. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 96.1 32 CTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : GTTCCCCGGTGAGGTCGGCGAGGGCGTCCAGGTCGTGGAAGCGCGCTCCCATGGGAGTGGACAGGACCGTGACGTCCCGGCCCTGGTTCTGGAGGAGTTCCACGAGGCCGTTCACCGGCTCGTGGCCGCTGGTGGATGCTCCGGACAGGAGCAGGTACAGGGGGCGCTGATCAGTCATGGGACCAGTTTCGGGGGTCCCGGGCGCATCCTCGACATCAGCCCCCGCAACGGTTCAGGGCCCGACTGTAGGAGGCGATCCTGAAGCACTTCGAGGAGTACCTGGGGGTGGGTGGGTCTTGGGGGGCTCGGTTCGTGAGGAGGGGAACGGGAGTGTAGGCGGGGCGGTCGTGGCTGCGAGGGGCTCAGGTATTCGTGAGACCATGTCGGGAAGTGGAAGCGGTGCTGGGCGCTGCCGGTGAAGGATGGTCGAGGCTGGCTGTTCCTTGACCGGTGAGTAGGTATCGCGAAGATAACGCTCCACGTTGTTGCAGGTCATTAAG # Right flank : GGCTGTCCTCAACAGGAGGTCCCTCGGTCAGCGGGCACTCTTCTCATAGGCGTCGAGAAGGTCGGCCACGAGTCGGCGGGCGTACGCGGTCTCGAGACCGGCGGGGCGAAAGAGGATGCGGTACATGATGGGGGCGACGATGCCGTCCATGGTCTCTTCGAGGGCGGGGGTGTTCTCCCCACGACCGCTCGCGCGGCTGAGGATGGTGTCGATCTGTTCGGCCGCGTAGGCGGAGCAGCGCCCGGCGTTACCGCCGTCCGGGTCGCCGAGTAGAGCGTCCCGAATATAGGCCCGGCCCGAACCGGATCCCATCTCGTCGAGGAACTGTTCGGCCCAGGCGGTGAGGTCGGCTCGCAGGTCGCCGTGGTCTTCCGGTTCACCCTCGGGGCGCAGACGTTCCACCGCGACGTCCGACAACAGCTCGGTCAGGTCACCCCAACGACGGTAGATCGTCGACGGGGTGACCTCGGCGCGTTGGGCGACCATGGGCACGGTGAGGG # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 18 4641884-4642217 **** Predicted by CRISPRDetect 2.4 *** >NC_018524.1 Nocardiopsis alba ATCC BAA-2165, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4641884 29 100.0 32 ............................. GGCTCGTCCGGATCGAGAGGGGGACCGGCACC 4641945 29 100.0 32 ............................. GAGAAACACTATGGTTTCCAACCCGTTCGGAG 4642006 29 100.0 32 ............................. CCGTCCCCGCGTGGCAGAACGGCGAACTGATC 4642067 29 100.0 32 ............................. CGGATCGCGTAGGTGTTGCGAGCCTTCATCCC 4642128 29 96.6 32 ..........T.................. AAGACCACCGAGAAGGGGTAGTGGCACGAGTA 4642189 29 93.1 0 ..............T.............A | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.3 32 GTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : ACACCCCAGGCCATGTCGCCGTCGAACTGGCCGTCCAGGGAGAAACGGCACTGATCACCGGCGACTGCGTCCACCACCCGATCCAGCTCGCCCATCCCGGCATCGGGGCCTGCGTCGACATCGATCCTCGGCGCTCCGAGGCCACCCGCCGTGCGCTGCTCGCGTCCCTGGCCGCTACCGACACCCTGCTGCTCGGAACCCACTTCGCCCCGCCCACCGTCGGTCGGGTCGTCACCGACGGGGACGCCTACCGGTTGCTACCGGTGTCAGCGGACTGAACGGGGGCTTCAGGACTCCGGAAGGGTGGGGAGAGGGGGCTTGGTGTGGTCCGAAGCTCGGGAGGGCCGTTGTTCCGGGTCGGTCCGGCTTTCGTGAGAGCAAGCGGTGAGATGGAAGCGGTGCCGGGGTGTCGGTGGGTGGGACGGTCGAGGTCAGCTGTTCTTTAACCGGGCAGTAGGTCTCATGCAGATAACGCCTCGCGTTGTCGCAGGTCATCAAGC # Right flank : AAACCCGCACCGACCGCGTCCGGCCCGGCCCTTACCCGGCGTCGCGTGCCGAATCGGTGAGGTGCCGCCAGGTCCGTACGAGCTGGCTGAACTCCTTGACCTGCACGAGCACGTGGTCGCGGGCGGCGTTCTCCGCGGCCTCGGCGTCCCCGCCGACGATGGCGTCGGCGATCGCGCGGTGCTCGGCCAGGGAGCGTCGCATGCGGTCCGGCACCCGGAGCTGGAGCCGCCGGTACGGCTGGAGGGCCCGTTTGAGCGCGTGGGCCTGCTGTCGCAGGTATTCGTTGCCGCACGCCTCGGAGACGACACCGTGGAAATCGGCGTTGGCGTAGTAGTACCCGTCGGCGTCGCCCGCCGTGGCGTACCGCTCGCACGCGCGCAGGGTGTCCTCGAGCCGCTCTATCGACTCCCGCTCGATGCGACGTGCGCAGAGCCGTGCCGCCATCCCTTCGAGCTCGGCCATGACCTCGAAGCGTTCGGCCAGCTCTGAGACGCCGAGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 19 4652533-4653475 **** Predicted by CRISPRDetect 2.4 *** >NC_018524.1 Nocardiopsis alba ATCC BAA-2165, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4652533 29 96.6 32 ............................C TCTGGACGATCGACCAGGTCACCGAGTTCCTG 4652594 29 100.0 32 ............................. TTCGAGTTCCAGACCAAGGAGCTCATCGCCGC 4652655 29 100.0 32 ............................. CGCTGGAGGACTGGTGCCGCTACCGCCTAGAC 4652716 29 100.0 32 ............................. CTCATCGCTGCCATCTTCGGGTCGGTGAGTGG 4652777 29 96.6 32 ............................T CACGAACTACGCCCACGGAACGATGCAGGACT 4652838 29 96.6 31 ............................T CCGCGGTAGGTGTTTTCGAACCCGTGGGGGG 4652898 29 100.0 32 ............................. GAGGAGCCTCGGTTTCGGGCCGGTCAGGCCCT 4652959 29 100.0 32 ............................. CAGATCATCCACGCCCTGGACGAGGCCCCCTC 4653020 29 100.0 32 ............................. AACACGAAGAACCCGCCGCTGGTCGTTGACCA 4653081 29 100.0 32 ............................. GGCTTCCAGCTCTCCCGCGAACAACTCGGTGC 4653142 29 100.0 32 ............................. TCCAGGCCGCTGGCCGGCCGGTGGCTCTGCCG 4653203 29 96.6 32 ....A........................ CCGCTCCGCTGCACGCAGGGTACGGTCCGGCC 4653264 29 96.6 32 ...........A................. TTTCGGTGGGTGACGTGCACGGCCTCGACGTT 4653325 29 96.6 32 ...........A................. AACGCGGCACGCCGGTACACCAAGGCTCGCGC 4653386 29 96.6 32 ............T................ CGGCGGTACCAGAGGCCCGTGAATTCGGCGGC 4653447 29 86.2 0 ............T.T..........GG.. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 97.6 32 GTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : ACGACGGTGAGGAGACCCCGGAGGAGGGGGATCGGGAGAGCACCAACTTCAAGCTGACGCGGTGGGACGCGGTGGCCAGCGCGTTCCCCGAGCCCTTGGTGATCGACACCGAGTCGTTCGATCCGCGTGGCGTGAACTGATCTCGGAGGGGGCGGGACGGTGCGAGGGGAGGTCGCGGTCGGCTGGGTGGCGGGTGGCGAACTGGTCTTGCGAGGGCCAGGCCTGGCGCTGTCGCCTGTTGTTGGAGCGCGGCCTCTCCTCGGCCGGTGGCGTGTTCGGGGTGGTGCTGGAGTGGGTGCGGGTTCTCGTGGCCGGTTGTTAGCGGTGGGGCCGGAAATCCGGGGATGTTGTTCTTGGGCGCTTCGGTGTTCGTGAGAGCATGCCGGGGAGTGGAAGCGGCGCTGGGCGTTGTCGAAGAGGGATGGTCGAGGCTGGCTGTTCCTTAACCGGCGGGTAGGTCTCGCGAAGATAACGCCTCGCGTTGTTGCAGGTCATTAAGC # Right flank : GGGTCGAGGAGCGGGCTCGGGGCGTGGTTCTCGGCTCATTCCTCCCGCCCGCCACCACCCTCAATGGTGGTGTTCTGCGCGGTGCCGGACCGCCTCGAACCACGTCGGTGGCTCGAGGCTAGGTGTCCGCTTCGCGATCGACATGCACCCTCAGCCCCGATTCACCGGGGCTCACATGTGGAGCGAGCTCCCATTCCTCGGTGTAGTCACCGGTGAACTGGGGTCGATACGGAATCGGTTCATCGATGAACAGCCGGTCGAGGCGCTCCCGCAGGCCGTCTCGAGCCCGCTCGTAGTCGGAGAGGCGGTCGGCGCTCGGTAGTGCCCACGGCGGTAGGACGCTCATCCCCGTGTAGGCGAACGTGCCGTGGAGCAGTCCGAAGAGCAGTTCTCGCAGTTCACCGGATTTTCCACGGGGACCGATCGAACGCGGACGATCGCCGAGGGTGGTGACGACCAGAGCGCGCTTTCCGACGAACGGACCCTGTTCGAAGCGGAGT # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 20 5117146-5116445 **** Predicted by CRISPRDetect 2.4 *** >NC_018524.1 Nocardiopsis alba ATCC BAA-2165, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5117145 29 100.0 32 ............................. TACTTCGAGGATGAGATCAAGCCGGCGAAAAA 5117084 29 100.0 32 ............................. GCCACTGGCCCGGAGTGGCCGCCTGCGCCACC 5117023 29 100.0 33 ............................. CCGCCCCAGGACCCTTCCCCCGAGCCCTCGAAG 5116961 29 100.0 32 ............................. AGGCCGGCGGGGCTATCTATCTGCACGAGCTC 5116900 29 100.0 32 ............................. TTTGGGTGTACCGTCTGGCGCTGGCCACGGTT 5116839 29 96.6 32 ............................T CCCAGACTGCCGGGGCCTCCAGCAGCGCCTCC 5116778 29 100.0 32 ............................. ACCGGGAGATCGAGGAAGCCCTCGAAGGCAAG 5116717 29 100.0 32 ............................. CGGATGTTCCACACCGCCTCGGCGTCGCCCGG 5116656 29 100.0 32 ............................. TCGGGGTCGGTCGATCAGGACTCCTTCCTGTT 5116595 29 100.0 32 ............................. ATCAGCAGCCAGCCGGTACGGGTGTCGATCGT 5116534 29 100.0 32 ............................. GAGGCCTACATCGATCTGACCGCCTCCCGGTT 5116473 29 82.8 0 ...........C.G.A........GG... | ========== ====== ====== ====== ============================= ================================= ================== 12 29 98.3 32 CTGCTCCCCGCGCACGCGGGGATGACCCC # Left flank : CTCCAACCGCTCCAGGGTGCCCGCGATACCGTCTTCGCTGTCCGTGCCGGTTGTGAAGGCGTCACGGATGTCGTCGAGGGCGATCCCGGCGTCGGCCATCTTGCGAATCCACAGCAGGCGGATCATGTCTTCGTGCCCGTAGCGACGACGGTCATCGCCGCCCCGCTCAGGCTCGGGGAGCAGGCCGATCTCGTGGTAGTGGCGGATCGCTCGTGGCGTGGTGCCGGCGAAGGCCGCCGCGTCACCGATCTTGACCTGGTGGGGTGGTTTGAAGGACGAGTGCATGAGCGGGGCCTTTCCTCAGGGGATCGGGACGTGAGTCCACTGGACCACATGCCGTTACGGAAGGTGCAACCTCGTACACACCGCCCCGTGCCGATTCCAGGCGCTCTAGGCTGGCGGGGGAGTGGCGTCGGGTGGGTGATTGAGGGGTGTCGGTTTTGTCTGTTTCTCGACAACTTGCAAAAATGGCGGGTCCACACCGCCTCGGCGTCGCCCGG # Right flank : GACCTCCGGGGAGGTGGAGGGCCTCCACCGGATCACCTGGCGGGTGATCTCGGTGAAGGGTCGTTCCACCGGCTCGGTCAACGGGAACTGTCCCGGATGAGCCGGCTACTGGAACCCGGCGGGGATCGTCATGAGGTCGATTCCCCACAACAACGGCAGCAGGAACAGTGTCCCCACGACGATGAGGGCGAGGGCGAAGAGGTTCAGCCAGAACCCGGTCCTGACCATCTCCATGATCGTCACCCTGCCTGTGCCGAACATGATCGCGTTCGGGGGAGTGCCCACTGGAAGCATGAACGCGCAGTTCGCGGCCATCGCGCAGGGGACCATCAGCGCGTACGGGTGGATGTTCAGGGAGAACGCGAGGGCCGCGATGACCGGGAGGATCATCGTCGCCGTCGCGGCGTTCGAGGTGATCTCCGTCAGGAACAGTACGAGCGCGGTGGCGAAGATGATGGTCAGAATGATGTTGACCCCGTCGAGCACGCGCAGCTGCTCAC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCACGCGGGGATGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 21 5118720-5118263 **** Predicted by CRISPRDetect 2.4 *** >NC_018524.1 Nocardiopsis alba ATCC BAA-2165, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5118719 29 100.0 32 ............................. CCGTGCGGGAGGTCATCCGCGAGACCGTCACC 5118658 29 100.0 32 ............................. CCCTCCGGGCAGATGCGCGTAGAGCTTGGCGG 5118597 29 100.0 32 ............................. GAGGACCACCCCGGCAAGCTCGTGCTCTGGGT 5118536 29 100.0 32 ............................. ATCACGAGGTGATAACAACCCCTTCTGGGGGC 5118475 29 100.0 32 ............................. CACCGGGACACCAAGCACGGACACGCCTGGGA 5118414 29 100.0 33 ............................. CATCGGGAGCAGCCCCAGGGCCTGCCAGGGGGT 5118352 29 100.0 32 ............................. TTCACGAAGAACCGATTCCTCGGCGGGGCTCT 5118291 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 8 29 100.0 32 CTGCTCCCCGCGCACGCGGGGATGGCCCC # Left flank : GGAGCTTGTCGTCCTTAGAGCCGATGCCGCTGTGCAGGACGTCGAGGTCGACCACGTAGGGGGAAAGCGAGGAACTCATGGTGGGAGATTAGCGATCGCCTACGACAGACGGGTGGGCATGTGCATCCCAGCTTCCGTGGTGCCTGTGGGTGTGGGTGTCTTACCGGGAGGAGGGTGGTCGTAGCTCCGGTGGTGGGGGTTGTCCACAGCCCGGAGGATCCCCTTCTTCTTTGAAGGAGAGCGCCCTAGCCTGGAAAGGTGTTCGACTTTTCCAGGACCTTTCACGGATATATGTCCTTCGACGCCGACGAGTTCTTCGCCTGTTCCCTGAGCGACCTCAGATGATCTTCGCCTGCTGCTGCCTCCGAACAGGTGGGGGTGACTAGGTTGGTGGGGGAGCGGTGCTGGGGTGGATGATTGGGGGAGTGTCTGTTTTGTCTGTTTCTTGACAACTTGCAAAAATGGCGGGTTGGCCGGGATGGCGTTGCAGGTCAGGAAGA # Right flank : CAGACTGTGCTCTAGGAGGAGGGTGAGTCTTGAGCGGATAGTTCTATGGCCAGATCCATGCAGCGCCATTGGGCCGGGGAGGTGTCGTAGGGCATCTTGCCGATGGCTTCGAACGCGCTCATCGAGCCTGTTTCCCGCCTGCCGGAGCTGATGTCGGCCTCGTCGTTATCGGTGGGCTCAGGGTGCAAAGCGTCCCAGGCGTCGAAGAGGGCATCGTCGTCCTCGTCCAGGCCGGACTCCTCGATGACGGCTTGCAGGGCGCTCTCGAAGATGTGCCGCTCGACGGCCAGTTGAGCCACCCGTGGATCATCGACGGGGACACTGTCGTCGAGCGCCTCCTCGGCGTCATCGATGCGGTCGGAATCCTCCCGCAGAGCGGGATGTGTGGCCAGGGCGATGAAGCGGGTGGCCTGGACGGCCGCGCCGAGCGGGCCGAAGATTCGTTCAGTGACCAGCAGAGTGTCCAGGTCCGCCTGACGCAGAGAGCCTTCGGGCAGGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGGCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //