Array 1 461147-462699 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHWG01000003.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-5240 NODE_3_length_696328_cov_107.442307, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 461147 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 461208 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 461269 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 461330 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 461391 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 461452 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 461513 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 461574 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 461635 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 461696 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 461757 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 461818 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 461879 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 461940 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 462001 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 462062 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 462123 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 462184 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 462245 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 462306 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 462367 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 462428 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 462489 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 462550 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 462611 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 462672 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 479014-479531 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHWG01000003.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-5240 NODE_3_length_696328_cov_107.442307, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 479014 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 479075 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 479136 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 479197 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 479258 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 479319 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 479380 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 479441 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 479502 29 93.1 0 ............TC............... | A [479529] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //