Array 1 62-4546 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJOX01000039.1 Methanosarcina sp. 2.H.T.1A.3 scaffold11_1_size150579-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 62 37 100.0 36 ..................................... CGATGGAATTTCTTGAAGAACTATATAGAGATAGCA 135 37 100.0 37 ..................................... AAATACAATTTATCGCGCTCTTGATACATTCCATACT 209 37 100.0 36 ..................................... TTATTTCTAATATTTCTTTTGTAGATTCAAAAGAGC 282 37 100.0 36 ..................................... ATTTGTCTTTGAGTTTCCTGCTTGCGGAAATCACAG 355 37 100.0 36 ..................................... TAATGCCGGGGTCGGTAGCTTGCCTTGCAAAATTGG 428 37 100.0 34 ..................................... TTGGAAACGGGACTGTAACAAGTGGAGCTATTAA 499 37 100.0 38 ..................................... CCTGTGACTTTTCCAGATCTTTTTTCTTATCCAGCTTT 574 37 100.0 33 ..................................... ACTGTAGTGTAGATAACAAACTATAAATAACAT 644 37 100.0 37 ..................................... AGGATTGATGAACATGACTGGAAAAATAAAAATCACA 718 37 100.0 34 ..................................... CAAACGACACCCTGGGATAATCCGCCATTGAACC 789 37 100.0 37 ..................................... ATTAAGATCATCTCCTTTTAGAAGTCCGTTTCTTCGC 863 37 100.0 36 ..................................... CCGAGTTAGTGAGGACTTATAATATTGACAGAAAAG 936 37 100.0 36 ..................................... TCAGACTTGTACTTAGAATAGGCATCGGTGAATTTG 1009 37 100.0 35 ..................................... TATCCCAGTTCAAGAGCCTTTTTGATTTCCGGGAA 1081 37 100.0 34 ..................................... CGGTCTGTTTGCTTGTTATTGCCATAAATGAGAT 1152 37 100.0 35 ..................................... ATCTTACCATTGAATGTTTCTACACTTTCCGCTAC 1224 37 100.0 35 ..................................... CGCTTTTGTCACATAAATCATATTTGTCGGATAGT 1296 37 100.0 35 ..................................... GTATGTATATTAAATTGTATATGTTATGTTATCTA 1368 37 100.0 36 ..................................... ACACTACGGACAAAAGAGGACTTTGACATCAGAAGC 1441 37 100.0 35 ..................................... CTCGCATACACCATATATATCATGTTATCTCTCAT 1513 37 100.0 36 ..................................... TTTCTTACAGGGAAATATCTTGATGGATTGGATAAT 1586 37 100.0 37 ..................................... ATGCCTTGTGTGTGTGGCGAAAAACGAGAACTCGAAA 1660 37 100.0 37 ..................................... AACAACAGGATCAGCCCAGGAAGGAAAAGCCCAGGAA 1734 37 100.0 34 ..................................... GGATCATAAGTTGCCTGCTTTCCAGAGATCCACA 1805 37 100.0 37 ..................................... AACCCATGCCTCTCACCTAGCATCCGAGTATGAACCG 1879 37 100.0 35 ..................................... ATCCACATCTCTTTTCTTCTGTTTTTTCTTACTCT 1951 37 100.0 34 ..................................... TCTTTGCTTTCATAATCAGGCCTACTATGACACT 2022 37 100.0 36 ..................................... CCATTTTGTCCTCAATCCTTTCAGGGGGATTCCCAT 2095 37 100.0 36 ..................................... CATCTCCTGTAATCTTGCTTCGTTCACAATCCTTCT 2168 37 100.0 36 ..................................... TCACAGGACAAACTTCTGAATTCGGATGGCAGCCTG 2241 37 100.0 35 ..................................... CCTCTAAGAAGTTTGAAGTAATGGAGTATAGAGTC 2313 37 100.0 35 ..................................... CATTGAGTACAACCCATTGCCCATTCACGGGGGAT 2385 37 100.0 37 ..................................... AATGGGAGTTGAATTTTAATGAATATTGAAAAGAGTT 2459 37 100.0 35 ..................................... TTAGGAATTTGCCACTGACGGACTTTCACCGGAGG 2531 37 100.0 33 ..................................... TTTTTCCTGTCATGTTTATCAATCCCTAAAAAT 2601 37 100.0 45 ..................................... TTCTCTCGATGGTCCCCTTGTAAAACATGTAGGATACACGGATTC 2683 37 100.0 36 ..................................... AATAAAAAAGGGAAAATCCTTCTCGAAAACACCGGA 2756 37 100.0 35 ..................................... TTAATTATTCAAAACTATTCAAATTTGATATAATA 2828 37 100.0 34 ..................................... ATTTTTTGTATCGGTATATCAGGACGGGGGATTA 2899 37 100.0 34 ..................................... ATCCTCATCATTTCCATCACTGGAAAAGAGTTAG 2970 37 100.0 33 ..................................... AATTACAATCAACCGGCAGGAAATTATCATCAT 3040 37 100.0 37 ..................................... CCTAGTGGTGCGGCTTCTTCCTCTTATTCTTCGGGGG 3114 37 100.0 37 ..................................... AACAAACTCCATCTGTATACATCACTAATCACCAATT 3188 37 100.0 35 ..................................... GACATAGGGGTGACTATGTATGGACTTAACGGATA 3260 37 100.0 37 ..................................... AAAGAATAAACGGGGGATTATAAATGGAATGTATATA 3334 37 100.0 35 ..................................... ATGCTGGTGTGTCCCTGCTGCTACAGTACCGAATT 3406 37 100.0 37 ..................................... GGACCTGTTTGGCTCCTATCATGTACTTCCCGAGAAG 3480 37 100.0 35 ..................................... TGTTCAGATCAATTCTTGCAAAATCAATTGCTTGT 3552 37 100.0 39 ..................................... TACATTGAAAAGAACCCACTTCTCCAACCGTACACCGTG 3628 37 100.0 34 ..................................... TAGTGATGTTTGCAATCTCTGTAAACATTTCAAC 3699 37 100.0 34 ..................................... TTGGTCGAGGGTTTTGCAGTCACTCCACCATACA 3770 37 100.0 38 ..................................... TTCGGACCAAAACGCTTGACTCGTACGGCGTTCTCATT 3845 37 100.0 37 ..................................... CGGCTCGATGAAATGGAGTGCAGACGACACATACGCA 3919 37 100.0 38 ..................................... AACAACATGGTACGCAAAACCGCCAACACGCTTAAAAA 3994 37 100.0 38 ..................................... TCAAGAAGCAGTATAACGGGCGAATCTATACTATGATC 4069 37 100.0 36 ..................................... CACCTGTAAAACCATCTTAAATGAACATAGACCAGT 4142 37 100.0 39 ..................................... TGACAATAACCACGAAGGGAACCCCGTTCGATGAAGACG 4218 37 100.0 38 ..................................... TCTAGGGTTATGAAGCCTTCGCCTTCAAAATCGCCATA 4293 37 100.0 38 ..................................... ATTGCTAAGAGCCAAGACAAAAACATACAAAATTGAAT 4368 37 100.0 34 ..................................... TAAGACCCTAAGGTTTTACCAAGCCTTCTATAAA 4439 37 100.0 34 ..................................... CTGAATTTGATGGGGTAGGCGGCAGTTCAATCTC 4510 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 62 37 100.0 36 ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : AAGATCCACTAAAACAAGGATTGAAACTTGGAAACGGGACTGTAACAAGTGGAGCTATTAAA # Right flank : CTTCGGTGGAAACTGGATAAAAAACATTCATTCTTTGTCGAGAAGTAGCTCCAACTAATACAAGAACCAAGTTTCCACCCAAACTCACCAAAACCAAAAACCTAAAATAACCCCAGAAGTTATTCTCTAACAGGGAGAATAGCCATGACCAGCGAAACCGAAACTCCGGAATGTTGCCCTCCGTTTGATCCCGCCCCCTGGGATGGAAAAGTCTTTGATTGGAACAATAAAAGGTTCATCAGGGATTCCGTTACCACACAGAATTACATGCCCCTGAACTTCGGGGAAGTAATAATGAGGATGAACGAGAAAGTTGCCAGGGCTGGTGCGGAAATGCCTGACTGGCTCTGCCTGTCGGACCATACCTCTGAAAGCAATATGGACCTCTATCTGGCTGTTGACAGAGAGGTCGATGGGGCTGAAAATGTGACCCTGAGCGGGAAGTTTTTGAGCAAAGTGTATGAAGGGAATTTCGAAAAAACAGGAGAATGGTGCGGGGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 4546-6783 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJOX01000086.1 Methanosarcina sp. 2.H.T.1A.3 scaffold46_1_size27366-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 4546 30 100.0 40 .............................. TGTTTATATAGGGCCCGGCAATTGAGGATGTATCAGAAGA 4616 30 100.0 39 .............................. TCCGACAGAGCAGGGAGGGTGACAGAAAATTCAATACTG 4685 30 100.0 37 .............................. ACGTCTACTCCTACAGTGGTATCTTCAGTGAAAGGTT 4752 30 100.0 35 .............................. ATGATATAGTCAAAATAGAGAAGATCACAAAAACT 4817 30 100.0 36 .............................. GACGCATTAGACAATATTACGTCATTGATCCTTGAT 4883 30 100.0 37 .............................. ATGTTGTATATTCATTCAGTAATGTATATGCGGATTT 4950 30 100.0 36 .............................. GTTGTAAAACTTGTAAGCGCTTACTTACAAGTTTCA 5016 30 100.0 36 .............................. AACCTAATTCTTTGATACAGTTCAAAATCAAATTTA 5082 30 100.0 37 .............................. AGCCTCTTTGTAGCTCTCGATTTTGTATCCAAATCAG 5149 30 100.0 37 .............................. AAGCCTACTCGGTATAGTCAGTTAATCGCTATTCAGT 5216 30 100.0 35 .............................. ATAACCACGACACGTCTACATATGACGAGAGCATC 5281 30 96.7 40 ...........................T.. TTTTTTATAGAGTGATTCATCTATCTATGCGCTCCATCTC 5351 30 96.7 40 ...........................T.. TTTTTTATAGAGTGATTCATCTATCTATGCGCTCCATCTC 5421 30 100.0 35 .............................. ACAGGCACAGACATTGACCCATTCAGACCAGATTG 5486 30 100.0 37 .............................. ATTGACGTGGAAGAAAAAAGAGACGACGAAGAAGATG 5553 30 100.0 36 .............................. TTCCTCTACCCCATGCCTATACGCTTCATATGCTGC 5619 30 100.0 37 .............................. ATTAAAGACCCCTCGCTCTATTAAAAAACGGTTAATC 5686 30 100.0 38 .............................. ATTTCCATTATAGAAGTTATCAATAGCTTTTATCCCTT 5754 30 100.0 37 .............................. AAAGCAGCTTTAGATGCAATCAAAAACGCCATTCCAG 5821 30 100.0 35 .............................. GAGCCTGATTTCTGCCTGCGTTGGTTGCGCCTCTG 5886 30 100.0 40 .............................. TTATGTGCCAATCTTCCCCGGACACTTTTTCCATATCTGA 5956 30 100.0 34 .............................. CTCCTAAAAAGCATGTTGAATTGAACCTTAAAAA 6020 30 100.0 35 .............................. GAGCTATGCAATACAGTACCCTACCTACCAAATCC 6085 30 100.0 40 .............................. GGGCTCCTATTTCGTCAACTGCAAAAAGAAGCGGAATATT 6155 30 100.0 38 .............................. GTAGAATCCAACCATATTGATCTTAATCCTGTATTCGC 6223 30 100.0 38 .............................. ACCTTCTTTATCAGCACATAACCAAGAACGGCTATAGC 6291 30 100.0 36 .............................. AGATTGATCAGAGCATAAGTGTCCTCGCCGTTGGAT 6357 30 100.0 36 .............................. GGATATCTGCAAGCTCTTCGTTAAGGTCAGCAGAGC 6423 30 100.0 36 .............................. AATTGAGACACATGGAGGAATCAAAATAGAAGAATA 6489 30 100.0 37 .............................. CTGATAGCTCCGTATAAGGTGGAGAGGGAGGGGGTTT 6556 30 100.0 36 .............................. ATTCGTTTAAATATTCCGAGAGGTTGCAGGCAGAGG 6622 30 100.0 37 .............................. ATTTAATATTGAATAATAAAATGGGGTCCGTTATAGC 6689 30 90.0 36 A.........T..........A........ CTATTCCGAAATGTTTATTATGTCCCTATAAAATTT 6755 29 80.0 0 ...........CT........TC..-..T. | ========== ====== ====== ====== ============================== ======================================== ================== 34 30 98.9 37 GTTAAAATCAGACCTTAGAGGGATTGAAAC # Left flank : CTGAACTGGGTTCAAAATAGTGTTTTTGAAGGTGAACTTACAAAAGCCGAATTCCTGAAAATTAAGTCAAGGCTTAAGGAACTAATTGAAGAAAGCCATGATCACATTATCTTCTACAGTTCCAGAGATAAAAAATACCTTGGAATAGAAAATCTCGGAACTCCAAAAGCAGATACAAGCAACATAATTTGATCTGCCACATCTGTGTATTTCACTACTTAAGCTTTCACGCAAGATCCAACACTTTATTTATATATTTATTATAACTCCACTGTCTGTAGATTCGGGTTCTTTTCTTTTTTCGTGGATCTTTATAAATGAAACGCCAGAAGAACGATCCCCGAGAATTCCTCTTGAATCTCCATTAAGAAAAGAATACTTTTATATTGTACAGCACCAAATACAATTGCCTAAAAACAGCATCATAAACCCGAATTATTCAGCTACCATTTGAAAGGATCCTGCATCTAATTTGCCTAAATTCGGGGAAAATTTCCTTG # Right flank : CCTTCAATTCACATTTAATCTTTTCTATTTAATGAAAAAGAAAAGTTACTTATTTGAATACCTTTCTCTATTTTGAAATATTATTATTTTGTGAAAGTGAAGATTTCTGGAAATGGAAGTAACAATAATGAGCCAGGGTTTTCTTTATACGTTTACTGGGAATCCTTTTGTGGATGCTGGTATATGGGCTATATGCGAGTGGTCGGGTAGAAAAAAGCCTGAAGAAATTACAGTGGAGGATCTCAGAGAAATTAAACAAGATGTGATCTCTGTATATTTAAGTCCGGAATGGGCAAAGAGCCTTTATTCTGTTTTTCCGAATAACGCGGTTACTAATCCCTCTGTGAAAAATAAGGATAAACGATTACTTGAATTTTTAGAGCAGCTAATTGGTCAGGTTGAATCTCAGGGAGGGTTAGGAGAGTTCGGTAACTGCATCTCTTGTGGGAGATATGATGTTGAGGACGTTAGGACAAAAACAGAAATTCCCCTCATAGGTT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCTTAGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 13405-13738 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJOX01000002.1 Methanosarcina sp. 2.H.T.1A.3 scaffold54_1_size13800-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 13405 37 100.0 37 ..................................... ATTGTCTCTCTATATTATACATTAATGATATATATTT 13479 37 100.0 37 ..................................... TCTGTATGTAGAAAGCATCAGGGACGGAGAGGTGAGA 13553 37 100.0 38 ..................................... ATAAAGACTTTGACTCCATACATAATAAAAATAATCAC 13628 37 100.0 37 ..................................... AGAGTAACGAACTCATCAGAGGGTCACAGGTTCGAAT 13702 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 100.0 38 ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : CTGGAATCGTTATTTCTATTGAAGCACACATAGTTACAGATATAATATACACTAAAGCAAAAAGAAAATCCACTAAAATAAAAAAGAAACTAAAAAATATTCGCACCACCAAATCATAAATTTCTACATTTTATTTTCTACATTTTATTTTCTACATTTTATTTTCTACATTCTATTTTTTAGATTATATTTTTTAGTCAGTTTTTATAGAATGCCATGTCAGGCGGTTGTCGATGGGATATAATGTTTACTCTTTTACTCTTTTTTATTCTTATAGTAGGGCTTTGCGTTAGGTTGATCATTGATTGTTAACATGAGCCGATAATTAAAAACAAAAGTTTAATAGAAAGAAAAGCATATTTCCAGATGTTTCCAAACCATCAAAAACCCTGATTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCAGAAAATGGGCTCATTTCAAGCCTTTTCTGGCCAAACGCCGGAAATTTTTGCCCT # Right flank : ATTTGTCTTTGAGTTTCCTGCTTGCGGAAATCACAGATTCGCGAGCAAGATCCACTAAAACA # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.53%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : NA //