Array 1 154444-153035 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOOZ01000005.1 Escherichia coli strain MOD1-EC6891 MOD1-EC6891_5_length_307398_cov_46.7157, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 154443 28 100.0 32 ............................ AAGGCAAGTGATGGCGAAATTACCCGCGCAAT 154383 28 100.0 32 ............................ AAATTGGGGACACTTTCTTCTACCTCTTTTGT 154323 28 100.0 32 ............................ TCAATGCTGCTAAACGCGCACATGAAGAGTCA 154263 28 100.0 32 ............................ GCGCACGGCGTGGCGACAGAGAGCACGCCCGC 154203 28 100.0 32 ............................ AGTTCGGCATGAGCAGCTCCTCTGTAGTCAGA 154143 28 100.0 32 ............................ AGCCAAAATAATGCGTCGCTTTCTGACATTTT 154083 28 100.0 32 ............................ TCGAGCGTACCAGGTTTACTGTCGTCATATAC 154023 28 100.0 32 ............................ ACAGAACAGGCGAAAGAAAGGGTACGCAGTAA 153963 28 100.0 33 ............................ TGGATTCCAAACCGCCCACCAACAAAAACAGGT 153902 28 100.0 32 ............................ GATACGATCGAATTTAGTCACTGAATACCCCC 153842 28 100.0 32 ............................ GGGTTGCGCAATGGGCTGGCCGACGAACGCGG 153782 28 100.0 32 ............................ AGGTCGTAAACCCCATTTTCAAAACCAATCAG 153722 28 100.0 32 ............................ GCGCGCAGTGCCTGATAATCAATTTTGCTCAT 153662 28 100.0 32 ............................ TGTACGGCAGTCTATTAGCTATAGGAGCCTGA 153602 28 100.0 32 ............................ AGCGTTCGGTGAATATTTTCCGCCCGAGTCCA 153542 28 100.0 32 ............................ TGGGGATATGCGCGGGATTTGGCGGTGGTTTA 153482 28 100.0 32 ............................ GTAGAAGCTCACCATCAGCGCGTCTTTTTTGA 153422 28 100.0 32 ............................ ACATTTCCGCCGTTATGAATCGGTATTCCATA 153362 28 100.0 32 ............................ ATCCTGGCAGAACAACCAGTCAGCAGATCCCC 153302 28 100.0 32 ............................ AATTCGTGCTGGCGCGGGTCGTGGCATCACGT 153242 28 100.0 32 ............................ GACGAATGCCGCACACCAGGGCGTCTCGTCGT 153182 28 100.0 32 ............................ CTGGAGGCGCTCACACTCACGCGGAGTGAGAC 153122 28 100.0 32 ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG 153062 27 92.9 0 .......................C-... | T [153043] ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCTTTTTATGCGCGCCATGCCCACCGCATACAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 164071-163501 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOOZ01000005.1 Escherichia coli strain MOD1-EC6891 MOD1-EC6891_5_length_307398_cov_46.7157, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 164070 28 100.0 32 ............................ AGCAGCTTTCCAGCGAGCGCGGTTAACTCACT 164010 28 100.0 32 ............................ AAAACGGCGGGTTTTTTACGCGTGTGGCTGCA 163950 28 100.0 32 ............................ GTTAACCGTTTCACACTTAACACTATGAACCG 163890 28 100.0 32 ............................ CTACAGCAACTGATGCAACGGTAAGCGCGATC 163830 28 100.0 32 ............................ AGCAGCGGTGGCGAACCGCGCGTTGTTGATTT 163770 28 100.0 32 ............................ AGAACTCGAAATTTATCGCGGGACTTTTCAGC 163710 28 100.0 32 ............................ AGGCTGCTGGCGCTCTCGTTGTTAACGGCAGC 163650 28 100.0 32 ............................ GTTCCACGCGGATATCTGTAATTTCCAGCAAA 163590 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 163530 28 85.7 0 ....................T...C.CT | C,A [163504,163507] ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTCAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //