Array 1 5219-5429 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIOX01000027.1 Salmonella enterica subsp. enterica serovar Enteritidis strain CFSAN024751 SAL4653_S13_L001_R1_001_(paired)_contig_27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5219 29 100.0 32 ............................. TTGCCGTAACCCTGCCGACCACCAATATTCAC 5280 29 100.0 32 ............................. CAGGACAATCCAGTAAGAAATTCAATGACCAG 5341 29 100.0 32 ............................. ATAACGCGCACCGGCTTCCACCTGGCGGATAT 5402 28 79.3 0 .................-A....G..GAC | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.8 32 GGTTAACCCCTGTGGGCGGGGATAGGTCG # Left flank : AGTGGAAGATTTGAATGTGCGGGGAATGATGGCAGCGCCAAAACCGAAGCCAGACCCGGATAACCCCGGCGCGTTCCTGCCGAACGGCGCCAGCCGCAAGCGCGGGCTGAACCGTTCGCTGGCCAGTGCCGGCCTGGGCGAGTTTTTCCGGCAACTTGAGTACAAATGTGCATGGCGCGGCGTCGCGCTGCTGAAAGTTGGCCGCTGGGAGCCGTCCAGCAAGCGCCGCAGCAGCTGTGGCGAGATTAATGAATATTTGACACTGGCAGACCGCCGGTGGCAGTGCCCGGTGTGCGGCGCAGAACATCACCGTGACATTAATGCCGCGGTGAATATTGCTGCCAGGGCAGTGTAACGAATAAAAATAGGGCGCGGCCCGCCCGAATTAACGCCTCCGGACATGGCCAGTGTGCTGTGGTTGAAAGAGGAAATTTCCGCAAAAATCTGGTAGAAATTCAGGCGTTATTTTTCGCTATAGATTTCAGCCAGATGCCGCCAGA # Right flank : TAAATCATCGTTAAGCTGCGGCACGTAGGGCCGCGGAAACTTAAATTTTAACTTGTAATAAATCCATTGTTTAATGTATTTAATTTAACTGCATGATTTAATTGATTTTAATTTACTGCTTCATTGTTTGAGACGCTTGGTGATTTTTTCCGTAACTATGAAGTTTTTTATGTGTTTTTACTAATTGATTCCATGTTGATTAACCACTCCCATTATCGTAACAATTTATACTAATGAAATTGTTGGTATTATATTCCCCTCCATATTATCACTTAAAGCCACAGCGAATAATTTTCGTAACAAGTTCACAAATGATACACACCCCTTTTTATCGTAACAACATACCGTAAAGCCAATCTTCGTAACATAGAAAACACCTATCGTAACATATTACCACAAGATATCGACACAACATATATAATTATACGCGCGTATAATTATATATGTTGTGT # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTAACCCCTGTGGGCGGGGATAGGTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.10,-6.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 157657-157139 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIOX01000005.1 Salmonella enterica subsp. enterica serovar Enteritidis strain CFSAN024751 SAL4653_S13_L001_R1_001_(paired)_contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 157656 29 100.0 32 ............................. ACGTTGGCTGAAAACGGTTTTTCGGTCCGCCT 157595 29 100.0 32 ............................. AATATATGGCGCTCACGCGCATGAGCATTCTC 157534 29 100.0 32 ............................. CAGGGCAAATTCATCCGCCGCTGACCACTGGT 157473 29 100.0 32 ............................. GACGCTTACATCTCACCGAGAGATTTTGAGGC 157412 29 100.0 32 ............................. GGAACTGGTTTAGCTATCGCTGCCGGGGCTAT 157351 29 100.0 32 ............................. GATTGCTCAGATTGGGAATTTGACCAGCGGCC 157290 29 100.0 32 ............................. TCACGAGGGCCCCCTTATTGGGTCGGGCAGGT 157229 29 100.0 32 ............................. GTTGGGTTGCATAGATGACACGCTTATAAATA 157168 29 96.6 0 ............T................ | A [157141] ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATGATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGTACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 174448-173808 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIOX01000005.1 Salmonella enterica subsp. enterica serovar Enteritidis strain CFSAN024751 SAL4653_S13_L001_R1_001_(paired)_contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 174447 29 96.6 32 ...........................T. AGGATTTCGCCGCGCTGTTGGCCTCCAGATTC 174386 29 96.6 32 ...........................T. CCGTGCCTGTCCAGGACAAATTGCCGATTATT 174325 29 96.6 32 ...........................T. CTGCCGGTCTGTGCTGTTGTCGTCAATAATCA 174264 29 100.0 32 ............................. GCATGTGACAGTCTGATTTTTATAGCGCATGA 174203 29 96.6 32 ............................C AATTTAGGGGCCGGAACTCCGGGAAAGGCAGC 174142 29 100.0 33 ............................. CAAACACCAAGCTCTTCCGCCGCGCGTTCCTGA 174080 29 100.0 32 ............................. TTGCTCTCATTAAAGGGGTTTCCATGTTTGAT 174019 29 100.0 32 ............................. CGGTCGCAGCCTGGCCTGTTGCCGTAGAATCG 173958 29 96.6 32 .........T................... AGTTACTGATGCAGACTGCGGATCTTAATCGG 173897 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 173836 29 75.9 0 ...............A.AA.....GC.GT | ========== ====== ====== ====== ============================= ================================= ================== 11 29 96.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAAGCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGGAGGCTTTTCTACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTAGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //