Array 1 4391-4061 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQVN01000013.1 Streptoalloteichus hindustanus strain DSM 44523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4390 28 100.0 33 ............................ GCCGGCGCTGCCCCACTGGGCCGCTCGGGTCGT 4329 28 92.9 33 G............A.............. CGTGATCACCGGGCCGTGTCGGAGGATCACGGC 4268 28 92.9 32 G............A.............. TCGCGGGGCGACATGGTCACGACTTCGTCCTC T [4242] 4207 28 100.0 33 ............................ CCGAGGCGAGCAGGCAGAGCATCCTCGCCTGGG 4146 26 92.9 33 ................-....-...... CCACCCGTGCCTGCAGGATGCAGGGCTGATCGC 4087 27 71.4 0 ........T...G.G.T....-.C..GG | ========== ====== ====== ====== ============================ ================================= ================== 6 28 91.7 33 ATCGGCCCCGCGCGCGCGGGGATGAGCC # Left flank : TCTCCCGCTCCGGCGCGGGAACCATCGCGGAGCTGACCGCACTGGGCAAACCAGCGGTGCTGGTCCCCCTGGCCACCTCCGCCGGAGACGAGCAACGACACAACGCCCGCCAGCTCCATGTTGCTGGCGCCGCGATCGCCCTGCTCGACGGTGCCACGCCGAGCTCCCTGCGGGACGCGCTGGCTCCGCTCCTCATCGACAGTCAGCGGCGGGCTGAGATGGCGACCCGAGCGCGACAGCACGGACGGCCGGACGCGGCGGACAGGCTGGCCGTTGTGGTGCTGTCCGCCGCGTCCTGACACCGACGCTCAGGGAAGGTGCGATTCCACTCCGGACTCGATGAGCGTGAGACAGGCGGGTGTGACCTTCTCTCCGGCCACAGCACCAGCGACCTGAGACGGCCCGCTACCAAGTGCGACGGATGATCTACTGTGTTGAGAACCAAAATCGAACAGGTCAAAATCACGCCCACGACGCCCCATCACCCCAGGTCACGAAGT # Right flank : GGTGGGGCCGAAGGGTTCGTCGCCGCGGATTGTGATGCGGTGCATCACTCGTTGGAAGTGGCCGTAGTCGTCGACGGCGTAGTGGGCGGTGCTGCGGTTGTCCCAGACGACGACGTCGCCCTGGGTCCAGCGGTGGCGGACGCTGTGCTCGGGGCGTCCGATCGCGACGAAGAAGATGTCGAGCAGGGCGCGACTCTCTACTTCGGACAGTCCGAGGATGGTTGTGGTGAAGCCGGGGTTCACGAACAGGCTCTTGCGGCCGGTTTCCGGGTGTACGCGGACCACGGGGTGCACGACGGGGTCGAGGGTGCGGATGCGGTCGCCGTCCCAGGTGTTGCCCTCGCCGCCGAGGCGGTTGTCCAGGTATTCCTGGAAGTCCTTGCGGCCGTCGTGCACGGCCTGGAGTTGGTCTGCCAGTCGTCGCAGGGGTTCGGACAGGGTGAGGTAGGCGGCTTCGAGGTCGGTCCAGCAGGTGTCGCCGCCCACGGTGGGCAGGGACA # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGCCCCGCGCGCGCGGGGATGAGCC # Alternate repeat : TCGGCCCCGCGCACGCGGGGATGAGCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTGCCCCGCGCGAGCGGGGATGAGCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 6626-6230 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQVN01000013.1 Streptoalloteichus hindustanus strain DSM 44523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6625 29 100.0 32 ............................. TGCGGGCCGACACCCGCCGCAGGGAGGGTGTC 6564 29 96.6 33 ............................C CGTCCACACCGCGGTGTGGGCGACTGCCTCGCG 6502 29 100.0 32 ............................. ATCGCCACGGACATGATGGTGTCCGCAGAGTT 6441 29 96.6 32 .................A........... GCCAGCTTCCAGTGGAGCGTTCTACGCGGCAT 6380 29 93.1 32 ........................G...C CGATAGTCCAGGCCGTCGAAGCTCCGGCCGAA 6319 29 93.1 32 G...........................A CGGGGAGCACAGAAAAGACCCGCCCCTCGCTG 6258 29 89.7 0 G......T....................C | ========== ====== ====== ====== ============================= ================================= ================== 7 29 95.6 32 ATCGGCCCCGCGCACGCGGGGATGAGCCG # Left flank : CCCCTGGCGAACCGATCAACAACCTCGACGCCGCCCGCCTGTCACCGTTGGTGGACAAGCACATCAACCTCCACGGCCGCTACACCTTCGGCGCCCACATCCCCGCGCCCGGCGCGCTGCGGCCCCTGCGTGATCCGGCCGCCCGGGACCCCGACGCCGACCAGGAGTAGCCCCCCTCCGCAGAGGTGGGCCGCCACCCGGCGTGAGGATTGGTGGCCTGCCCCGCCCGCGACCCCGCGACCGGCTACCCTCCGGAGCAAATCGCCCCCGTGATCACCCACGTGATGAACGCAGGAGCCATCGCCCCCCTGGAGGAAGTCCTCCACACCTGGCGCACCCGCCTCCACCACCGAAGCCGAGCCATGCTCAACGCCTCAGCCCACTACCTCGACCTCAGACCACCCACCACCCACAGCGACCAGTGATCTACTGTGCTGAGCACCCAAACCGAACAGGTCAAAACCACGCCCACGACGCCCTATCGCCGCAGGTCACGAAGT # Right flank : CTCGGTCTCGGCGTCGTCGGCCTCGGAGTCATTGGCCCCCACACGCGGGGGCAGTGAAAAAGGTGGGGTGGCTGGTCCCCACCAGCCACCCCACCCTGTCGCCTCTGCTCGTCAGCCCTGGAAGACCGAGCCGAGGATGTGCGACCCCGGTTCCCCCGAACCACTGGGCTTCCCCCTCACCGCCCCCGACTCCGGTCTACGAGGTTCACCCCGTCGCTGGTATCCAGCTTGGCTCAGGCGCCAGCGACACGCCGGGGACCAAAGTCCTGACCTGGCGTCCGGAGGTCCCACCCCAACGGTCCCTGAACCCAGCCCGTGCGGAAGTGGCCTCCAACGTTGATGGGCAGACCCGGGCGGCCCTACCGATGCCGGCTTCTCCAGTACCTGAACGGTTGTGGCGAGACGGGGCGCGGTACTGTCGCGCCGCGTCCGGCTCCTGTTCGTGTTCTCGTCCACTGTGGATGGTGGAGTTCTGTGAACAGCTCACCTCGCTCTGTCCG # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGCCCCGCGCACGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 108043-107467 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQVN01000013.1 Streptoalloteichus hindustanus strain DSM 44523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 108042 29 96.6 32 ............................G TGCTGGAACGTGGTCCGCGCCCCATCTCGCGA 107981 29 100.0 32 ............................. TTGGAGGGCGAAGCATCCGCACATACCGCTTC 107920 29 93.1 32 ..........................T.G CGCCGCCTCGCCGCCGCCGACCAGCTCGGCGA 107859 29 100.0 32 ............................. GTGCTCGCCGCGCTGCACTCCCACATGAGCGG 107798 29 93.1 32 ..........................T.T ATGGACGTGCCGTCCGTGGCCGAGCTGGATGA 107737 29 100.0 32 ............................. TACGCCCGCGCCGCCGTCAGCGTCGGCGACGG 107676 29 93.1 32 ...................A........G CGCACCGCGAAGCGTTCGCCAAGGCGGCCGAG 107615 28 89.7 31 ........-........A..........G CTGTGAGCGGCTGCTGACCTGGATGGTTCCG T [107590] 107555 29 100.0 29 ............................. GTCCCGCGCCGTCTCCAGCGTGGTGTTGG 107497 29 79.3 0 .........C...G.......G..G.T.G | GG [107489] ========== ====== ====== ====== ============================= ================================ ================== 10 29 94.5 32 GTCGGCCCCGCGCACGCGGGGATGAGCCC # Left flank : GATGAGGTGGCAGCCGCCCTCGGCGAACTGACCTCCGCCGAACTCACCCCGACGACGGACACCGCGCCCCTGACCATCGGCGCCCTGGCCCACCGCCTCGACGTCCACCCAGCCACGCTGCGCAAATGGGAGAACGCGGGAATCCTCCACCCCACCCGCGACCCCGCCACCGGCTACCGCCTCTACCCACCCGACACCGTCCGCGACGCCCACCTCGCACACCAACTCCGACGAGGCGGCTACCTCCTGGAACACATCGCCCCCGTCATCACCCACGTCAGAGACGCAGGCGGCATCGCCCCCCTGGAGGAAGCCCTCCACACCTGGCGCACCCGCCTCCACCACCGAAGCCGAGCCATGCTCAACGCCTCAGCCCACCTCGCCCACTACCTCGACCTCAGACCACCCCCACCCACAACGAGTGATCTACTGTGCTGAGCACCAAAACCGAACAGGTCAAAACCACGCCCACGACCCTCTATCGCCGCAGGTCACGAAGG # Right flank : AACGAGTCCGCGATGGCGTAGGGCATCCCGTCGTCGGTCCCGCATCTGCGAGTGTGGGGAAATGAGAAGGTGGGGTGGCTGGTCCCCACCAGCCACCCCACCCTGTCGCCTCTGCTCGTCAGCCCTGGAAGACCGAGCCGAGGATGTGCGACCCCGGTTCCCCCGAACCACTGGGCTTCCCCCTCACCGGCCCCGATTCCGGTCTTCGAGGGTTAGTCCCGTCGCTGGTATCCATGTTGGCTCAGGCGCCAGCGACACGCCGGGGACCAAAGTCCTGACCTGACACCCAGAAGTCCCACCCCAACAGCCCGTGCGGAAGTGGCCTGCAACGTTGATGAGCAGACCCGGGCGGCCTACCGATACCGACTCCTCCGGTCCCCCTGTCGCGGCGGCCGGCGGTCTCGGTGTGCAACCGCAGGATCAGCGCGTCCAGCTCGGGAACGTTGCCACTGGTGTGGGCGGCCTGGTTGATCTCGGCCAGGTCGGCGTGGGACACCGCC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : GTCGGCCCCGCGCACGCGGGGATGAGTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 75568-74381 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQVN01000004.1 Streptoalloteichus hindustanus strain DSM 44523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 75567 29 89.7 32 .....................G.A.C... CGCGTCCGCGACGGCCTCGGCGCCCATCAGAA 75506 29 93.1 32 ....T.......................G CGTCTATTCAGTCGGACGTTTCTGTGTCCTCC 75445 29 100.0 32 ............................. CACACGCATGATGCCCCGTGTGGCCGAGGTTG 75384 29 96.6 32 ............................G GTTCATATGGCTGCACGCATCCGGGTCCGGGT 75323 29 96.6 32 ............................T CCAGTGGTCGCCGATCTCGTGGGCGACCAGGC 75262 29 100.0 32 ............................. TCCACCTTCTTCGGGTCGCACATCCAGACCCG 75201 29 100.0 31 ............................. TCATCGTCCTGTGCCCCCGGACGTTTCGGCC 75141 29 100.0 32 ............................. CTGTCTGGCCGGTTCACGCTGCTTCGTGGTGC 75080 29 100.0 32 ............................. GCTGATCACTGTTTCCCCCCAGACGACGACTG 75019 29 100.0 32 ............................. AGAGTCCTCAATAGTGAAGTAATCCTCGATCG 74958 29 96.6 32 ............................G TGCCGGTGCGCCCGTCCGGCCTGATCAGCGAC 74897 29 100.0 32 ............................. ATCCGGTAGTCGTCGAGCCCCGCAGCGCTGGG 74836 29 96.6 32 ............................G CTGAGCCCCTGGCGCAGCTCCTTCGCCTTCGG 74775 29 86.2 32 ....T................G.A.C... CAGCCTGATACACCCGGATGAACGCCAGCGGA 74714 29 96.6 32 ....T........................ CAGGGCAGCCAGGCTGTTGGGTCAGCCACGAG 74653 29 96.6 32 ....T........................ CGCGCGAGGCGGCGTCGGCACGCGAGCGAGCG 74592 29 100.0 32 ............................. CGCGCGAGGCGGCGTCGGCACGCGAGCGAGCG 74531 29 100.0 32 ............................. CGCGCGAGGCGGCGTCGGCACGCGAGCGAGCG 74470 29 100.0 32 ............................. CCTCAAAGGCACGATCCGTGTCATCGAATCCT 74409 29 89.7 0 .....................G.A.C... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 96.9 32 GTCGGCCCCGCGCACGCGGGGATGGTTCC # Left flank : CTGGCCCACCTCGGCGTCTCCTCCGGCCCCTGCGGCGCCGCCGCCCTGGCCGGACTCCGCAACACGCTCGCCCACACCGACCGCCGTACCGCCCTGAACATCGCCCCCACGGCAACCGTCGTCCTGCTCAGCACCGAGGGCGCGGAAGCCAACCCCAACACCGTGGACAGCGAGGCCTAACCACCCTTCTGTCCACTATGGACTCTCCCTCGCGAGCGCCCGGCGCACCCCGACGCCCGCCGAGGATCCCGACTGGCCCGTCGGGGATCGTGGTCTCCCGCCCCGCTCCCCGACGGGCCTCCCTCATCAGGAAGGCGATGTGAGAGTGTGTGCCGCGACCTCCGACTCCGGTGAACAGGACAAAGCGGGACCCCTTTCGTGACCACGCCCCGACACCGCCATCCCCAACCAGCCCCGCGAAGGACCCCAACCCCACCACTTGCCGAAAGCAAATGGTCAAAACAGGCCACCACGCCCAACAAAACCCCAGGTCAGAAAAT # Right flank : GCCACAGATTCCTCAATCAGCACAACTGAAAGCTGAGACCGCGTGGACGACTGAGGTCGACGCGGTGTCGGGAGCCGTGCCGATAACCTACCTCCGGGTTTCCTCGATTGGGCGAACGTGCGTTGCTCGACAGGGGGCGTTCCTGTCGGATGGAGGTCCTGGGCTTCCGCCACGGCACGATCTTGATCGCCGGTCCGACGGCGAGCAGGACGGGCGCGTCGGTCATTCGCCTTCACGGAAGGAGCTAGTCCCCGTGCACACTGACCAACTGACCAGGCCACCGGTCATGAGGGCGCAGATGGTGATCCGCAGGCCGGTTGAGGAGGTGTTCCGGGCGTTCGCCGATCCGGCGATCACGACGAAGTTCTGGTTCACCCGGAGCAGCGGTCCGCTCCAGGCCGGCGCCAGGGTCACCTGGGAATGGGAGATGTACGGCGTCTCCACCGAGGTCAGCGTCAGGGAGGCCGAGGAGAACCGGCGGATTCTCGTCGAGTGGGACC # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.80, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATGGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 131652-132107 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQVN01000004.1 Streptoalloteichus hindustanus strain DSM 44523, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 131652 28 92.9 33 ...........G.A.............. TCCCAGGATCACCTGATCGGTCCCAGCCATCCG 131713 28 92.9 33 ...........G.A.............. CCTTCGGGGTTTCCCCGTCGATCCGGACATTGG 131774 28 92.9 33 ...........G.A.............. TCGGTGGGGGCAGCACGTCGCCTACGGAACAAA 131835 28 92.9 33 ...........G.A.............. CGGCCGGCAATCCGGCGCGAGCCTGGACACCGT 131896 28 100.0 33 ............................ CACGCCCATCGAGGTGAGCGTGACGTTCAAAGC 131957 28 100.0 33 ............................ CATCGTCCAGCCGATCTCGGACGCGGCCGCGTG 132018 28 100.0 33 ............................ CCGCATCGCCCCGTTCCTGATCGCGTCGCCGCT 132079 28 85.7 0 ..........GC.........TG..... | T [132104] ========== ====== ====== ====== ============================ ================================= ================== 8 28 94.7 33 GTCGGCCCCGCACGCGCGGGGATGGTTC # Left flank : CTGCTCCTCACCGGCGAGATGATCTACCCCTGGATGTTCGACGAGATCGCCGGCCTCCGCCCCTTCGCCGACGCGGCACACCTCCTGGCCGAACGCGACGACTGGCCCGCCCTGTACGACCCGGCGCGCCTCGCAGCCAACCAGGTGCCGGTCGCCGCGGCCGTCTACCACGACGACATGTACGTGCCCACCGAACTCTCGCTGTCCACCGCGCGCTCGGTCGGCTCGCTGCGCGCGTGGGTCACCAACGAGTGGGAACACGACGGCGTCCAAGCATCCGGCGAACGCGTCCTGTCCCGCCTGATGGACATGGTCGCGGGCCGGGTCTGACCCCGCCCCCTGCGGGAGGGCACGAGTCCTCCTCCAGAACGCGAGTCCGGCCCGCTGACACCCCGCCGTCAGCGAGCCGGACTCGACACGAACCCACCCCCGAACATCCATTCCAAAAGCAAATGGACAAAACAGCCGCCCCCACGAGATAAAGTCCCAGGTCAGCAAGT # Right flank : CCTGGGTGGGGCTGGTTGTTCTAGTGGCGTTTTGGGCGGTACAGGCCCACTCGGACCAGGGCCATGTCGGGGTCGACGCGTTCGTCTTTCAGGAGGCGCCAGCGTTCTACCGCGTCGAGGACGGCGTAGCGCTGGCCGACCGTCCACCACTTGATCTTGAGGGTTAGGGCGCGTGCGTCGACGCCGTAGGAGCGGTCGAGGTGGTCGATGTGGACGGCGATGAGGATGGACCCCAGGATCGTGTCGGGAGACGGGTCCGCGTCGGGGGTGGACAGGGCTTCGCAGACCAGGTGGGCCTCCTCTCGGGTGAGGTCGACGGTGTGGAGGTCGTGGTGCAGCACCTGGTAGTAGCGCTCCAGGTCGCGGCGGGCGATCAGGTCGGCTGAGGTGCTCGCGTCGGGGGCGGTGCGGGCCTGGAGGTCGGCGGCCAGCGGGCCCGTGCGGAACTGGATGCGGTCCTTGTCCTTGGTCACCTGTGTTCCTCGTGGCGGCGACGGTTG # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGATGGTTC # Alternate repeat : GTCGGCCCCGCGCACGCGGGGATGGTTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACCTGCGGGGATGGTCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 144408-143839 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQVN01000004.1 Streptoalloteichus hindustanus strain DSM 44523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 144407 29 100.0 32 ............................. ACCGGGGGGCGATGGGATAGCCGATCTACTAT 144346 29 100.0 32 ............................. GAGATGATCCGCAGGTCGGGGTGGGTGCTGGT 144285 29 96.6 32 .........C................... GAGGAGCTGGTAGGCGGCATCGTCCCTGTCAC 144224 29 96.6 32 ............................G TCCTTGAGTGACCACTACGCGGCCATGTGGGA 144163 29 96.6 33 ............................A AGTCGGGGCCATAGCGCCCCCCCTTCCTGGTCA 144101 27 86.2 32 ........--...A..............T GCCGACCAGGTGCTCCAGGTCCCAGGTAGGCC 144042 29 96.6 29 ............................G CACAGCAGGCGTACCTCGCCAACGGTTCG 143984 28 79.3 32 AC....GT.-.C................. TGGCTCGACCAGATCTGGGGGATGAACTTCGT 143924 29 79.3 29 .............AT........TC.C.A CTTACGTTTCGTCACGGTGACGCAGTAGC 143866 28 69.0 0 .A.....G....G...-....C.G.GA.G | ========== ====== ====== ====== ============================= ================================= ================== 10 29 90.0 32 GTCGTCCCCGCGCGCGCGGGGGTAGCTCC # Left flank : CGGTGGCCACGGTCTCGGCCAGCAGATAGGCCGTCGCCACCCACGACATGTGCGCGGCCCCACCGAGATCGGCGACGATCGTCGGCAGCGCCGTGCCCACGATCGTCTGGTCGAGGGCGGCCAGCAGCATGCCCAGCACGATCGTCACGAAGACGACGTTGCGCCGCCCGGTGTCCAGAACTGGCGGCGCCGGTTCCTCGACGGCCGGCGCCAGGTCGGCAGTGGGCACCCCTCCACGGTCACACCGCGAACCCACGCCCCGCACGTCGAGTCACCCGGTCAGTTGGCACCACCCCAACCAGCCACCCCCTCTCTCCATGGGCCTCCATGACCGCGAGATGCTGGGCCACGATGGAGAAGATTGGCCGACCTGATTCGTCGAGCTCAGGGCGGTGGTCGCCTACCGCCACTGCCGGGGAACCAGCTCGACTCGGACATCGGCTCCCGAAGGACTGGTCAAAACCGCCGTCCCGGCGAGATAAACTGCCAGGTCAGGAAGT # Right flank : TGAGCGCATAGGCATCGAGCAGCGGGGAGCTCACACCACGAAGGTTTCGGCGAAGACCACGCGGCCCGTTGTTGGGTCGGGGGTGTCGTCCGTCGGGAGTGGTTCGAGCTCTCGGATGACGATGCGGTGGTGGTCGGGTTGGCGGTCGGCGGGGAGTCGCACCGTTCCGCTCCAGAGGGGGATCGTGGGCCGGATGCCGGGTTGGGGAGGGGCCGGGTTCATCGGCAGGACGAAGTCGCCGCTGGCTGTCACGTCGTGTGCTTCGCCGGAGGGGCATGTGGCGGCTTCGTCCAGCACCAGGCATTCGCACCGGGCGCACCGGCGGGCACCGGCGGCGCCGACGACGTGCGGCAGGACCGTGAGGGCGTGTTCCACGTCGGTGACCGGCTCGTGGTCTTCTCCGGCCGCGCAGGGAGCCGGGGTGTTGTCCGGGCGCACCAACGTCGTGCACTTGCCGCAGAACCGCCAGCCGCGCTCCCCTGCGGTGTCGGGGCCGGACA # Questionable array : NO Score: 5.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCGCGCGGGGGTAGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCCCGCGGGGGTAGTTCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 207031-206574 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQVN01000004.1 Streptoalloteichus hindustanus strain DSM 44523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 207030 29 100.0 32 ............................. GCGTCCCAGGTCTTTTCCGACGCCTCGTCCGC 206969 29 96.6 32 ............................G GGTCGGGTCATGGCCGTCGGCGGGCCCGTCGT 206908 29 100.0 32 ............................. CCCGAGGTCGCCAGCACCGCGTACGCCCGGGT 206847 29 100.0 32 ............................. GCCAGCAGCTCCAACGCCGCGTCCCCGTAGCT 206786 29 100.0 33 ............................. GTCGTCGCCTGTAGCGCATCCCGGGCGTGGGGC 206724 29 100.0 32 ............................. CGGGTCGCCGGGGTGGTGGCCGGTGGTGGGTG 206663 29 96.6 32 ......T...................... ACCTCGCACGCCGCGTACGCCTCGGCCTGGTA 206602 29 86.2 0 .....................G.G.G..G | ========== ====== ====== ====== ============================= ================================= ================== 8 29 97.4 32 GTCGGCCCCGCGCGAGCGGGGATAGCTCC # Left flank : GACAGCCTGTGCCCCTTCGGGCCACAGACGCTGGTGAGCCGGGGTGGCTTTCCCGCAGTCGTGAATTCCACACAGCCACGCGAACAGTGCCCTGCCGCGCCCTGGCCCGCCTGCCACTTCATCCAACAACTCACGTGTTGCCGGCGCGAGGTAGTGATCCCAGAGCACCTCCCCCACGGCGGCTGTGTCCAGCAGGTGCGACATCAGCAGATTCATCACACCGCCAGCCCGCTCCTTCGACTTCCCCCACAGAACACCCAGCCACCGCACGATCTGGGGGTCGTCACCCACACCGAACCGCACCCAACCTCCTCGGCCTCAGCGGTACCCGACGTGAGAGCGTAGGACGTGACACCGACAGACTCGGGCGAACAGGACAAGCCAACAGGAAGCCCGTGATGGCACCGAACCCAGCCAAGCAGCCCACCCCGAACAGCATGTTCCGAAAGCAAATGGTCAAAACGACCGACCAAGCCCGGTAAAGCCCCAGGTCAGCAAGT # Right flank : GTCAGATGGGTGGCGGTAGTTCGCTGTTGCTGGTCAGGAGGGTGCTGGACGGCAGTGAGTGGGAATGACTATCGTTGCCGATAGTTGTTTCTTGGGGTGAGGGGTTTCTGCGTGCGCACCATCGTTGGTGTCCTGGCGGCCGTGTTGGTCACGGCCGCGTGCTCATCGCCGCTGCCTGCCGCAAGCACCGGGAGGTCGGGGGAGCCGTCCATTGACCGTTCTGCGCCGCCGTTGGCCGCTGCCAGCAGCATTACGGATCCGCATGGGCGCAAGATCTCGTTGCCGAAACCGCCGGAGCGGATCGTGTGTTTGAGCGGGCTGTGCGATGACATGGTCGTGGAACTGGGCATGACCCCGGTGGGCACGAGCAGTCCGGCTCTGATCAGCCACCCCGCGCTGCTGGGTCAGGGTGGGAGCGCGGTTCCGGTGGTTCAGGGCAGCTTCGGCAGCGAGGACGTCGAGAGCATCGCCCGGCTCAGGCCGGACCTGGTGGTCGGGCT # Questionable array : NO Score: 3.13 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCGAGCGGGGATAGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 5 596880-597335 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQVN01000004.1 Streptoalloteichus hindustanus strain DSM 44523, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 596880 29 100.0 32 ............................. CGCCCATACCGTGCTTTTCGGGCACGTACGCG 596941 29 100.0 32 ............................. CTCCCTCGGAAATGGGCACGTTGGACAGCGCG 597002 29 96.6 32 ............................G CGTTGGTTCGCGGCGGGGATCTCGGCTCAGCA 597063 29 96.6 32 ............................G TACTCGTGGAACGGCGCGCCTAGCTGCCTCAT 597124 29 96.6 32 ............................C GTCCTGGGGCACCTGCGACGCATCTGCCCCAC 597185 29 100.0 32 ............................. GGCGGACCAGACCACCCGATCGGACGTCTAGC 597246 29 96.6 32 ............................G TTAAGTGCATGGCACGGTGACGCAGAGCACAC 597307 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.3 32 GTCGTCCCCGCGCACGCGGGGGTAGCTCT # Left flank : GCCGACTTCCACATCGCGATGACCGACATGCTCAAGGCCGGCTTCCGCGTCGCCAACACCGGCCACACCTTCCCCGGCCTGCGCGAGGACCAGATCGCCTTCGGCCTGCCGGCCGCCGTCAGCGCCGGCAACGGCCACACCGCCCCGCCCGCCGTCCACCAGGCCCTGAACTGCCTGGCCCGCAACCAGAACTGCGGAAGCTACACACTGCGCGGCGGAGCCTCCCCCGCCATCCGCGGCCTCATGACCTGGTCGATCAACTGGGACCGCTACTACAAGTGGGAGTTCCAGAACAGCCACCGCCCGTTCCTCAACGCCCTCCCGTAACCGAACATCTACCCTGGCGGTCAGCGAACCGCTGACCGCCAGGGCGCTTCTGGTGTCCTGACAACCTCCGGACGAGGATGATCTACGGACCCAGGAACCAGCCCAGACACCCTGTGCGAAAACAAATGGTCAAAACAGGCCCCAACGCGCGATAAAGTGCCAGGTCAGCAAGT # Right flank : TGCGGAATTCGGCGAATGAGCAGCAAGCGTTCGGCTCCCGCACCTCGGCGAGCCCGCGCGGGTGACCTGCCGGTCATCCCAGGTCCGCGGTGCGGTGATCAGACTCCGCTTGCCCACGACGCACGAAGATTCGCTCGCGTGGGATCGCGCCCCCATCCCGTCGCTTCCGCTGTGATCACACCACGAATCACTGAGACGGAAACGTCTCCGTCGCCGGGTGAGCGCTGTGGAATCGGCCGCTGTTCCATGCTCGGCCCCGGTCGGGGATCTCGAACGCAGCCGGGCCGCCTTGGTCAGACTCGCGTGGTTGGCTGCTCGGGCTGCCCGAGCGTCAGGCGCAGCGCCTGGGTTGCGGCCTGTGCCGAGTCGAGCAGGCTCTGCCGGAACGGTTCCGGCAGTGTCCCGATTCTCAGGCCGGAGGCGTTCATCAGGGTGGTGAGTGCCGCGCGCTGCTCAGCGGTCACGCTGGCGTGTGCGCCGTGGTGGGGTTGTGCGGGGCA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGGTAGCTCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 722560-722828 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQVN01000002.1 Streptoalloteichus hindustanus strain DSM 44523, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 722560 29 100.0 32 ............................. GAGTCAGGGGCGGGCCGTCCGAGATCAGAGCT 722621 29 100.0 32 ............................. CCCAACCGACGCTTCTGCCGCGCCCACCGGGC 722682 27 89.7 32 ........--..................T ACGGAGTAGAGCACGACACAAGGATTGGGCAG 722741 29 93.1 32 ..........................C.T CAGGACCAGGCACGCAAGCACCGAGAGCCCTT 722802 27 79.3 0 ..T..........T..--.....G.T... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 92.4 33 GTCGTCCCCGCGCGCGCGGGGGTAGCTCC # Left flank : CCACCAGCCGGACCAGCTCAGCCGACCGGGGCGGCGGGTCGGTGACCGCGATGATCACCCGCGACGCGGGCGCGTTGACCCTGGCCCACACCACCCCGGGATGCCGCTCCAGAACCCGCTCGATCCGCCGGGCCACGCGCTCCCCGTCCGGCCCGTGCACCCCGTGCGCCTCGACGTGCAGCCGCCCCGGGCACGACCACACCTTGTTCCTGGGCCGCCCGAGGTAGTCGAGGGTGGCCCCGGCGACCTGCCTGGCGAGCGCGCCCAGCGTGTCGAGTGGATCGGCCGTGCGCGCCTCCTGAGAGCCCATGTCACCCCGTCCGCCGTGACCGTCCCCGTCCCCCCAGGGGTTCCCGCAGCCCACCCCGCCTATGCGTCCGCAACCACCCCTCGCCGATCAAGAACCCCACCCCGCCAGAGGGCCTCTCGCGCCACCCCACCCCTGTGATCTACTGGTCGAGAACACCATGATCGCCCGCTGTTCGCCCAGGTCAGCAAGT # Right flank : CCCAGGCATTCATCGCCGCCGGCCTTGGGGTGTGTACAGCGGGGTGGGGCCGGAGCTTCGGGCTGCGGGGAGTGTGGCTGGGGACTGGCTGAGGTTCGGTGTGTCCTTCTGTTGGTGGGTTGGGTTGGTCTTGGGCTCTTGACGGGGGGTTGTCGCGGACCTACTGTCGGTTCCGCTCAGCAGAAAAAAAGTTTCGTATGGCGGAATTTATGGGGAGGGGTCGCGTGGAGGTCCCGGGCAGTGTCCGGTTCGACGTCAACCTGTCGATCCTGTTCACCGAGTTGCCCTTGCTGGAGCGTCCCGCTGCGGCCAGGGCCGCCGGCTTCGATGCCGTGGAGTTCTGGTGGCCGTTCGACGTGGCCGTCCCTGGTGACCGTGAGGTCGATGGGTTCGTCAGGGCGGTGCGCGACGCGGGGGTTCGGTTGGTGGGGCTGAACTTCTTCGCCGGCGACATGCCGGGCGGTGACCGGGGACTGGTGTCGTGGCCAGCCAGGTCAGCC # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCGCGCGGGGGTAGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCCGCGGGGGTAGTTCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.10,-12.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 749897-750654 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQVN01000002.1 Streptoalloteichus hindustanus strain DSM 44523, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 749897 29 96.6 32 ............................G GCAGGGTGGCCGAGGTGACGCCTCTGCCCACG 749958 29 100.0 32 ............................. TGGCCGATTCACTGCGCCGGGCTCATGATGAG 750019 29 100.0 32 ............................. CTTGGCGTTTCTTACTTGTCAGCGGTGGCGTT 750080 29 100.0 32 ............................. CGTCCCCCGCAACCGGACCGCTCGCCGCTGCC 750141 29 100.0 33 ............................. GCCGCGCCGTGCGACCTCGCTGTGCCAGTGCGA 750203 29 100.0 32 ............................. CCCCCCTGCCGGGACACCCACACCAGACAGGC 750264 29 96.6 32 ............................T TAGCTTCCGGTAGCTTCCGGTGACAAAAAGAA 750325 27 93.1 32 ................--........... AGAGCAGGCAGCACGACGCCGAACGTCACTGC 750384 29 96.6 32 ............................A CGAGCTGGTCTGTGGAATTCTGCGGATTCTGC 750445 29 100.0 32 ............................. GCGTGCGTGGTCACCGCCGTACCGTCCACGGC 750506 29 96.6 32 ........T.................... GCCGAGTCAACACCTCCGGGGACCCGTGGGCG 750567 27 93.1 32 ........--................... TACGGCACGACCAACGCCACCACCGCGCTGCT 750626 29 86.2 0 .......T...AT...T............ | ========== ====== ====== ====== ============================= ================================= ================== 13 29 96.8 32 GTCGGCCCCGCGCGCGCGGGGATGGTTCC # Left flank : CCGGGCAGCGGCACCCGGGACGACCTCGTCGCGGCGATGCGCTCGGGCATGGTCGACGTCATCCAGGTGCCCGTGAACCCGTTGGAGCACAACGTGATCGCCGAGGTGCTGCCGTTGGCGGCGGAACTCGGCCTGGGCGTGCTGGCCATGCGCCCGTTCGCGGAGGGCGAGCTCCTGTCCGGCCCGTCACCCGACGAGATCGCGGCCACGGGCTGCCGCACCTGGCCCGAAGCCCTGCTGCGCTGGACCCTCTCCACCCCGCATGTCACCGCCGCCCTCCCCGCCACCGGCAGCGCGACCCACGTGGCCGCGAACGCCGCTGCCGGCACGGCCCCACCCCTGACCCCGGACCAGCGCGCCCTCATCCACCGCCTGGCCCACCACCACACCCCGGGAGCGCCCTGACACAGCTGATGATGTTCCCTGCGCCCGTGCGCACATCCCACAAGCAAATGGTCAAAACCGAGCCCCCGGCCCGCTATTAGCCCAGGTCACGAAGT # Right flank : CTCGGCGATGTGGGTCTCACCAGAGAGGTCCGTCGTCCCCGCGTGGTGGGGGTGAGGGGTTAGACGGCGTGGAGGTGGGGGGTGGGGGTGAGGGTGGGGAGGGGGATGCCGAGGTGGGTGAAGGGGGTGGTGGCGGTTCTGGTGGGGCGGAGGGCTCGGCCTTCGCCGGGTTCGAGCCAGCCCTGGTCGAGGGCGTGGCGGAGGATGGCGGCGGGGAGGGCGCCGGCGAGGTGTTCGCGGCGTTCTGTCCAGTCGAGGCAGTCGCGGAGGAGGGGGCGGCGGGGGCGTTGGGGGATGGGGACGCCGAGGTCGGTGAGGACGGTGCGGCCGGTGGGGGTCAGGGTGAGGCCGTCGGTGGTGTCGATCAGTCCTTTGTGGAGCATGCCGTCGCGGAGGGCGACGCCGAGGCGGCCGGCGAGGTGGTCGTAGCAGTGGCGGGCGAAGGCGAGGCGGTTCGCGCGGAGGTTGGCGCGCAGGCCGCGGACCGGGCGGCCCTCGGC # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCGCGCGGGGATGGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 74692-73687 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQVN01000017.1 Streptoalloteichus hindustanus strain DSM 44523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 74691 29 100.0 32 ............................. TCATCGCGCTCGCCGTCGACGGCGAACTGCGC 74630 29 100.0 32 ............................. GTGGCCAGGCCCGCCCGGCGTCGCAAGGCCGC 74569 29 100.0 32 ............................. GTCGGAACGACCCTGCGGCCAAGCGAGGCCGC 74508 29 100.0 32 ............................. TCCAGGACCCGGCCGCCCGGGCGGATGGACAC 74447 29 96.6 32 ............................C CCACGACCTGACGGATTATGAGCGAGCTTTGT 74386 29 100.0 32 ............................. CTGATCTCCGCCCTCACCTCGTCTACGTCGAA 74325 29 96.6 32 ............................C TGCGCGAGGAGCTCGCGCAGTTCAGCGGCCAG 74264 29 96.6 32 ............................T GGGCGTGGGGTCCATGGGTAGCGGCTCCTGCT 74203 29 96.6 32 ............................C TCGTCCCCACGACTTGTGCGAGTTGCGATCGC 74142 29 100.0 32 ............................. GCTGGGCCGGGTCAGCAGCCAGACCTGGTCGG 74081 29 100.0 32 ............................. CCCTACCCGAAGTCGAAGGCGGGCCGCCGGGT 74020 29 93.1 32 G...........................C CAGTGATCGAGGATGCTGGCCACAGCGGCCTG 73959 29 89.7 32 G.T.........................T GGTCCGACAGGGCGGTGGCGAAGTCTCCGTAG 73898 29 96.6 32 ............................C TACGTGGGCGAGCTGTTCGCGATCTCCCCCAG 73837 29 86.2 32 G...A.....G...............T.. TCCGAGCAGGCTGGCACGTCCTCGCGTGCCAT 73776 29 96.6 32 ............................C GACCTGCTCTACGTGGACGACCAGGCCGAGCT 73715 29 72.4 0 G.............G......G..GTGGT | ========== ====== ====== ====== ============================= ================================ ================== 17 29 95.4 32 ATCGGCCCCGCGCACGCGGGGATGAGCCG # Left flank : TTCTTCCTGGAACACGTCTGCGAGTGGCAGGCCGCGGACCGCGGCTACAGCGACCTGGCCGCCCGACACATCCCCGAAGCCACGGCGACCGAAGAAGCCCGACGACACGGGTACGCGCTGATGCAGCGCATTGTCACCCGAGCTCAGGAATCCGGAGCGCTACGAGCCGACATCACCCTGGAGGACCTGGCCTTCGTGATCTGGGGCCAGGCCCGCACGGTGGAGGCCACCCACGACGTCGCCCCCCGCGCCTGGCGCCGCCACCTCGCCCTGATGCTCGACGGACTCCGCGCCCCAGCCGCCCACCCCCTCCCCGAACCCCCACTCCGCCCCGAAGAGGCAGCACGAGCCATGCGGGGCCGCTGCGACTGACCTCCAAGCCGAGAAGATCAGAAGACTCCGCCCCGGCACCCCACCTCCCCCAGCACCAGTTGATCTATTGTCGAACCGAACTGGTCAAAAACACGACGAGCCCGCACCATCACCCCAGGTCAAGAAGT # Right flank : GGTTAGGCGACGAAGATGCAGAACGGGTGGCCGGCTGGGTCGGCGTAGACCCGGAGTGGTTCTTCTGGGTCGTCTCGGCGATCTTGGAGTAGTCGTCCGCCGAGGCTCAGGACGCGGTCGTGTTGGGATTCCAGGGCTTCGACCGACGGCACGGTCAGGTCCAGGTGCATCTGCTGGGGCACCGGATCATCCGGCCAGGTCGCCGGGGGCAGGTGATCCACCTGTTGGAAGGCCAGGCAAGGCATGCCGTCGGTGGTGGTCAGCACGAGCCAGTCGCGGTCTTGCTCGTCGGGTTGGCCCGTTGGTGGGGGTTCGTCGCCGGGACGGTAGGTCAGGCCCAGGAGGTGGCGGTAGAACTCCGCCAGTGATCGGGCGTCAGTGCAGTCGAGCACCACTTGGCGCAGGACGGGCAGGTTCGCCGGGTTGGCCATCGCGATCACCCCCGGTCATTCTGCACCTGGGCAGAAGCAGGCGCACAACAACAGGACGCGCGCGGGCTG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGCCCCGCGCACGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 43738-43406 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQVN01000015.1 Streptoalloteichus hindustanus strain DSM 44523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================= ================== 43737 29 100.0 32 ............................. AGCTCGCGCGGCGGCGTTCGTTCAACATCCAC 43676 29 100.0 32 ............................. CTCGACATGAACGCGGCGACACCGGGGTGGCG 43615 29 96.6 89 ............................G CGTCGCGAGGTCGAGATCTCTTCGCTGCGCGCGTGCTCCGCGTGCGGGGATGAGTCGCTGGCGCTGGCCGAGATCATGACGCGGTCCGA 43497 29 79.3 32 ...G.T.T....T.............C.G TAGACCGGGGATGGGCACGCTCTCGAACGTGT 43436 29 79.3 0 ...A..........A.T....G....C.A | T,C [43418,43423] ========== ====== ====== ====== ============================= ========================================================================================= ================== 5 29 91.0 46 GTGCTCCCCGCGCACGCGGGGATGAGTCC # Left flank : GGAGCCGGCAACCCGCCGAGGCGGCCGCCGCTGCTACGACGAAGCCGGCCTGCGCCGCCTCGCCCTCGTCCTGACATGGCAGCAGACCGGCCTGATGCGCCTCGCCGACATCCGCACCCTGGTCAACAACCCGGTCACCACCGGCGAGTGGCAGGACGTCCTCCAGGCCCGAATGGCCCAACTGAACCAGCAGATCGACCGCCTCCAGGAAGCCCGCCGCTACCTGGACCACCTGATGAGCTGCCCCCGCGACGACCCCGCCAACAAGTGCCCGTACCTGGCCAAGGAACTCCAGACCCAAGTGGACGCGGCGCTGAGCGACACCACCGACGAGACCGAACTCGACACCGAGTCCGACCGCCCCTCCCGTCGCCCACCCCTCGAAGAGTTCGCGTTCCCCTTCCTGGCGAACCCCGGCCGCCCAGCCGCAGGAGGATGATCACCCGACCCAACCTGTCCAGAAAGCGCCCCAGCCGCTACGTTGGCCCAGCTCGCGAAGG # Right flank : GGCGATTTGCCGGACTTCTGCGGGCGGACCGTCGCGATTCCCCCACACACGGGGAAAGCCCATGCCGATCTCGCGGTGCGTGGTCGGCCTGATGCGCTCCCGCGTACGCGGGGCGAGGCCCAGCCGGGGTTGACCTCGGAGCGAACCACGAGGGCTCGCATGCGGGGTGAGTCGAGGTTGCCGGAACAGAGAGGTAGCAAGAGGTGAAGGTCTCCACGTAGCGGTGGTGAGTCCCAGGGCGGCAGGATGGGACAAGATGCACCCTCGGTGTTCCGCGCGGGGGGATGAGTCGGATTTCTCGTTGGTACCGGCCAGCGGCATCGTGGTCCCCCGCGCAGCGGTGAGTTGCAGAGGGCTGCGACAGAAGCCGAAGGTTCTCCGTTTTTCCCGCGCGACGCGGGGGGTCAGCGCGCCGCCCCCGGGATGGCCCAAGGTATGAGCGGGTTGGCGGTCGTCTCACCTCCGCATGCGCAGGAACCACGCAGGCCCCAGAGGTTCCA # Questionable array : NO Score: 4.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:-1.36, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 104985-105806 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQVN01000015.1 Streptoalloteichus hindustanus strain DSM 44523, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 104985 29 96.6 32 ............................G GAACGTCCTGATGAGTCCCATGCAGGCGGCGT 105046 29 100.0 32 ............................. CCGCGCCAGCTCATGGGTCTCGACGGTGAGCA 105107 29 100.0 32 ............................. TCGCAGGTCCCGCAGCCACGCCGCTAGCCCGT 105168 29 96.6 32 ............................G CGCGACGTCCACACCGGACACGGCCGAGGCAC 105229 29 100.0 32 ............................. GCGGTCGGGAGCACGCTGAGCTGGCCGCCGGC 105290 29 100.0 32 ............................. GCGGCGGGCGCGAGCCTGCGGGAGCTGTCCCG 105351 29 89.7 32 ...........A.G..............G TTCAACGACGCCCTGTCGATCCTGCGGCAGTC 105412 29 89.7 32 ...........A.G..............G CCCTCATACTCGCGGACGGCGACGACGCGGAC 105473 29 93.1 32 ...........A.G............... ACCGTGGCACCTCGTGCTCGGCTGGCGGCATC 105534 29 89.7 32 ...........A.G..............G CCTCAACGTGGCGTAGGCGCGGTCCAGATCCA 105595 29 89.7 32 ...........A.G..............G TCCAGCCGCAGTGGAGGGTCCAACGGTGGCGG 105656 29 96.6 32 ..........................T.. ACAGCACACCCCGAATTGGGGCAGAGGGGGCG 105717 29 96.6 32 ............................G CAACGAGGACACGCAGGAAATCCCGCCGGTGA 105778 29 96.6 0 ..............T.............. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 95.3 32 GTCGGCCCCGCGCACGCGGGGATGAGCCC # Left flank : GCGCCGCCGAAACACCCCGCCCCGGCCACTTCCTGGAGAACCTGGCCCGCGACCAGCTCCGCGACACCACGCCCGAACCCTCCACGCGAGCCCTCGTGGCCAGCATCGCCTCCGGCGACTCAGTGACCACCACGGCCAACGCCCTGGGCCTGAGCACCCGCCAACTCCACCGCCGTTGCCTCCACGCCTTCGGCTACGGCCCCAAAACCCTCGCCCGCATCCTCCGCATGACCCGAGCACTCACCCTGGCCCGCTCCGGCACCCCGTTCGCCCAGGTAGCAGCCGAATCCGGCTACGCCGACCAAGCCCACCTGTCCCGCGAAGTCCGAGCCCTCGCCGGCATCCCCCTGACCCAACTCATCACCCCACCCCTCCGCCCCGCTGAGAGGAGCCGTGATCGTCACAACCGGTAGCGTTCCCACCAATGCACCAACACCACCACCCAAACCCAAGTGGTCAAAAACGGCCCATGCCGCTCCGATCACCGCAGGTCAAGAAGT # Right flank : CCGGCGATGCCCGCAGCGCTCCGGGACCAGTCAGGCCCGGCACGGCTTCTGCTGGTGCGGCCCCTGCTATCGGCATGCCGTGATCAGCTCCCCTCGACAGGGGTCGGGCGGAGCCCGCGCAGCTGGCAGGCTGTGCGGATTGCCCGACAGCGTGGAGGGGGAAGCAATGGGGATTTGGAAGGACGCCAAGGAGAAGTACGAGGCGAAGGTCGCGCAGCAGCGGCACGCCGCACTCCAGCAGCGGATGGAGGCTGTGGTTACTCAGGCCCGCGCCGCCCGGGCGCAGGGCCTGACCATCTTCCAGGTCACGCTGGAGATCGCGGAGAACGAGCGCACCATGCTCCCGTCCTCGCAAGGGTGGGATGGCTACAACACCCGAAGAGTCGAACACGGCGGCTCCTCGGAGATCCTGTCCGCAGTGCAGGCCGAGGGTTGGGAACTCGCCCACTTCAGCGCATCCGCGCTCCAGACCGGATCGGTCAGCCGGGACAAGTTCCTTT # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : GTCGGCCCCGCACGCGCGGGGATGAGCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 24194-23391 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQVN01000005.1 Streptoalloteichus hindustanus strain DSM 44523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================================================================== ================== 24193 29 96.6 32 ............................C CGCTCGTGCCGCTCCTGGTGTGCGGAGTTCTC 24132 29 100.0 32 ............................. CTCACGGGCCTCAGCCGGCGGATGATTCGGCG 24071 29 96.6 32 ............................A TGTCAAGGAGATCATTCGCATGGGCCACGCAC 24010 29 93.1 32 ....A.......................T CCAGGCCGTAGCGCTCACCGATACCGGATAGC 23949 29 100.0 32 ............................. GTCCACGACATCGGCGACATCACCATCTCGGA 23888 29 96.6 32 ............................T GCGGTGGTGCCGGGCGCTGGGGCGGTACCGGT 23827 29 100.0 32 ............................. GGGGACACCTCCTGGTGTTCGCCGACTGGCGA 23766 29 93.1 64 ..........................C.C GTCAGTTCAGGTGCAGGCGCGCGAGGATGGCTCCGCTGTGGATGTATCTCATGACGCTCAGTAA 23673 28 82.8 26 ..-......A.A......A.........C TTCGCCGCCAGGAACGCCACACCGGC A,GA [23662,23666] 23616 29 75.9 32 ...A.......A.T..T.C......C..A AGTTGCATAGGCTGCAGTAATGACCGAAAGAC 23555 29 86.2 107 A...T....................CC.. ATCGGCGGGCCTGGGCCCACCGCCGAGCAAGCTTGGAGCGCTAGTCGAGCCGACCCCAACTACATGGGGATGACTCCGAGGCTAAGGAGTGTCCCAACATAGGGCTC 23419 29 75.9 0 A...C...AA.A.............C..C | ========== ====== ====== ====== ============================= =========================================================================================================== ================== 12 29 91.4 41 GTCGGCCCCGCGCACGCGGGGATGGTTCG # Left flank : CACCGCGACGGGCTGGTCCGAGTCCACCGTGCGCCGCCGCCTGGACCTCCTCCGCCGAGCCGGAGTCCTCTCCTTCCCACTCGACATCGCGCCGCCGGCGCTGGGCTACCACGCCGAAGCCCGCCTGTGGATGTCGGTCCGACCCGCCGCGCTCGTCCCCGTGGCGCAAACGCTGGCCCAGCACCCAGAGGTCTCCTTCGTCGCCGCCACCACGGGCCCCACGAACCTGGTCGCCTCCATCGTCTGCCGCGACACCCGCGACCTCTACCGCTGTCTGACGCAACGGGTCGGCACCCTGAAAGCCGTCACCACGCTGGAGTCAGCCCCGGTCATGCGCACCGTGAAACGCGCCGGCGCGGTACTCCCCCTCTGACGTCCCGGTCTGATCGTGAAAGATGGAGAACGCCGCCGAAGCCAACGAAGACCCCAACAACCCACCTATGCTTCCGCAAATGGTCAAAACAGAGGACACCGCGAGCTAAAGCCCCAGCTCAAGAAGT # Right flank : TGACGCCGATAGCCGGACTACTCGACCGGAGATCGACGAGAAAACTGAAACCATGGAGATTAGAAACTTGAAGCTCAATGAGTTCCGACAGCGTCTGAAGTCCGAGTTGGAAGCCCTCGACCATCCGGAGATCGTAGGGGTAGACGACATCGCGGTGCCACCCGGGACATCGGACGACCCGAACGACAAGCACAAAGTGCACAACCAAATCCGGGTGCGCTATGCGAGCGGCGCTAACTCGGTCATCATGGCACACGTCGTTCGTGGCCCAGGGATCCCGAAGCACGCCCCCTACAGCCCGCCGGCGGAGGCGTTCTGATGCGCAATCCTCGCTTTATCGACCTTTTCGAGCAAATCGTGTCCGCATGGCCGGAGGTTGTCAAGTACGAGCGTGTCGAGCTTGGCAAAGAGGGCGCCGTCCAACGGGTGACATTTACCGACGGCATTGAGATCGATTTCCGTATCGTCAATGGAGCCCCCGACAGTGGCGACGACGCGAC # Questionable array : NO Score: 4.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:-0.76, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATGGTTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [23-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 477880-478761 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQVN01000005.1 Streptoalloteichus hindustanus strain DSM 44523, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 477880 29 100.0 32 ............................. GGTCGGGTCGCCGGGCAGGTGGAGCAGGGCGG 477941 29 96.6 32 ............................G TCTTGCCACGGCAGGCGACGGACGAAGGCCAG 478002 29 100.0 32 ............................. ACGTCAAGGACGAGGCGCAACGCCGGGTGCCG 478063 29 96.6 32 ............T................ TGTTCGAGCGGCATGAGCGAGCCGTAGTGCGG 478124 29 100.0 32 ............................. GCCTCCTCCTCACTGGGCAGATCCCGCATCAC 478185 29 100.0 32 ............................. GGGACCCGCGTCGAGCCCTGCGGCTGTACAGC 478246 29 96.6 32 .................A........... TCGGCTGCGGTGGCGGCCTCGTTGTGGTCCAG 478307 29 100.0 32 ............................. CACGCCCTGATTGGGTCCATGGCGGTCAGCAC 478368 29 100.0 32 ............................. GCTGCTGGCAGGACTGACCGCCTGGCCAGCAC 478429 29 100.0 31 ............................. ACTGCCGACACCCGCCGTCGACGTCCTGGCC T [478454] 478490 29 100.0 31 ............................. CGGCCAGCGCGCAGCTCCAGCTCCCCGTCCC T [478515] 478551 29 93.1 31 ...........T................G TCAAGGTCACCGCGGAGGGTGCCCTCGCACT T [478576] 478612 29 96.6 32 .........A................... CTAGCCAGCAAGGGCTGCGCCGCGGCGGCCGC 478673 29 93.1 31 A..........T................. GTGCCGCCGGCCGCGACCCGGACGCGCACTG 478733 29 72.4 0 .........A....T..T...G..G.TTT | ========== ====== ====== ====== ============================= ================================ ================== 15 29 96.3 32 GTGGTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CGGCAGCCCTCGGCCAGGTCTCCGCGCCCGCCGCCCTGATCACCCGCGCTGTCGTGGACGTCGCCGCCCTCGCTGTCGCCCTGTGGGCACTGCTTCCGCCCCTGCGCTCGCCGGCCCCCTCGGCTGTCGCCGACGCGACGGTGCCGCAGCCCCGAAAGCCCCGCTCGGCCGACCAGCCTGAACCCGCCCCCGCGAGGGAGCCCGCGATCCCCAGGCCGCGCCCGTGGCTGGGCGGAGGAACGCCCGACGGCTGGGGAAGTCTGTACTAAATGGACAGTCGCATGTGGACGAACAACAACAGGCCGCCGCACGCCGCGCCCTGGAGAGCGGGTGGCCCGGCACCCAGGGGCGCTGGCCCCCAGCGGACTGATGTTGACGGTGCCGATCAGAACTCCGGAGTACTTGTGATCTACTTCGATGGGGACGAGAGAGGTGACCAGGTGCGATCGCAAATGGTCGAAAACGGATGCCGCCGGCTGTGTTAGCGCAGGTCAAGAAGG # Right flank : TCGCGTGTCGACAACGCCGCTCGGCGACGTCGAGGACAAACGGGACGCGTGCGAGAGCGCCTTCCGGGGTGGGTCTTCTGTTTGGGTGATCTTGCGGCGTTCGCCGCACCTGATGTCACCCGGCCGCAACGCTCACCCGCATGTCCGCGGTCGAGGAAGCCGCTCAGACAGTCCGGGCTGCGCCGACCAAGTTCCCGGTCAGGAGATCACTGTCGCGGCGGATGCCTTGCAGGAATGCCACGCCGCGGTCCAGGCAGCCACGGAGGGAAGTTGGCAGAGGGGCCAGCGCAGGCCATGGCCTGGCTCGCCTCGGCGGTGGACCGTCCCGGCGAGGTCGCCCCAACTCCTCAGAGAACTCCACAGGAGACTCGCCCGCTTCGCCGGCCGCTGGGCGAACCCGTCCCCAGCCCCAGAACCTTGGCCGCACCGACCGGCTCATCGTTCACGATCCCGAAGGGCGCAAGGTGTACCGATGACGGAGCGAAGGATGACCTTCAGCG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 547632-547482 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQVN01000005.1 Streptoalloteichus hindustanus strain DSM 44523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 547631 28 100.0 33 ............................ GCGGAGCTGCTCCCGAAGATCGAGACGGCAGAG 547570 28 100.0 33 ............................ CTTGGTGATGATCCCGGCGCGGTGCTCGCGGAC 547509 28 92.9 0 ..........................GT | ========== ====== ====== ====== ============================ ================================= ================== 3 28 97.6 34 GTGGTCCCCGCGCACGCGGGGATGAGTC # Left flank : GGGCCTAGAAGGGCTCCTCGTCGGTTTCCTCGGGTCGACGTGGGGAGAGTGCGGTGCGGGGCACCAGGTGCCGCATCCGGAGCGGACCGAACGCGGAGCCGCCGTCGACCACGTAGGAGACCCAGCCCAGCCAGTCGCCTCGGGTGGAGCGCATCCAGGCGTGCAGGACCCCGGGGGCGCGTTGGTCGAGTGTGATCCCCTCGGCCTGGACCCGCAGGGACGCCCGCTCCCGTGTGCTTCCCGCACCAGCGCGGTACAGCTCCCTGAGGTCGACCCAGACCGGTCGGCTGAAGTCGTACACCCGGGCGACCGAGGGGTGAGGCTCCGCCGACTTGTCGAACACACGTTCGATATTCGGCTGTCCACCCCCTTGATCGCAACTTCCCAACCCCAGACACCCCACCCGTGATCTACTCAGCTGGAGCGAGAGAGGTGAGCGAGCGCGAAAACGAGTGGTCAAAAACGGGCACTGCCGCCGGGATTAGCGCAGGTCACGAAGG # Right flank : CGAAGCGTGGGGTGGTTGTGTCCGCGTCAGCGGGGGCACAACCACCCCACGGCCGCGTACGGAGTGGTCAGCGATTCGGTCGGCAGCGGTGGAAGCGGTCGGTCATGCCGGGTGGCGGCGGTGGCGCCAGGCGAGGACGACGGCTGCCAGGCCGGGGATCACGGGGAGTAGTCCGAGCGTCCCGTAGGTGCGGGGGATGACGTTGGTGTAGGCGCCTCCCGAGAGCGTGAAGTTGAACAGCGCGGTGCTCGCGCCCAGGGCGAACATGACCGTGATGGCCACGTGGGCCCAGCCCTTCCTGCGGGCGACGGCCCAGGCCGTTCCGAGCCAGCCGGCGAGGCCGAGGACGCCCACGACGGTCAGGTAGCCGACGATGGCGTTGCGGTCGGCTGAGACGAGGTCGGTTGGCCAGTCCGGGTAGGCGCTTCGCACGTGGTTGGCCAGGCTGTCGACCGTGGCCACGTCCACCAGTGGCGCGAGTGTGGCGATCGTGGACAGGG # Questionable array : NO Score: 5.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGATGAGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.10,-12.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 556028-555695 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQVN01000005.1 Streptoalloteichus hindustanus strain DSM 44523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 556027 28 100.0 33 ............................ CCTCGACCTCGACAGGGGTTGGCGACGCCGGCC 555966 28 100.0 33 ............................ CCCCCCACCTGCGGGTTCGTACCGCGATGGGTA 555905 28 100.0 33 ............................ CTCCCGCCAGTGGCGGGGCGGGGCCGACGCCCT 555844 28 100.0 33 ............................ GACGTTGCGCTCGTTCCAGAGCGCGTTGATCGT 555783 28 92.9 33 .C........................C. CATTCGCACGCCAGAGTCAGTGGAGACACCCAG 555722 28 96.4 0 .....................G...... | ========== ====== ====== ====== ============================ ================================= ================== 6 28 98.2 33 GTGGTCCCCGCGCACGCGGGGATGAGTC # Left flank : CGGCGAGAACCACCCAGCTCTCATCACCCTGCCCGACGTCGACGTGTCGAGCCCCCAGGTCGAGCAGGCGACGAACCTCCTCGTCCTGCTCCCTGTCGGTGGGGTTGACGTCGATGTGAAGCCTGTTCTTGACGGTCTTGCCCTCGGGCACGCGCGCGAACGTCAACGTCGGAGGCACCGGCCCCGGGCGGTTCCTGCCCTCAGGCACCAGCGGAGACCCGATGGTGACGATCTCGTCGTCCTGGTCCCGCACCTCGTAGCCGAGAACCGAGCACCAGAACCGGGCGAGGCCCTGGGGATCAGCACAGTCGATCGCAAGCTCGGTGAACTTGCTGGCCATGTCAGGACCTCCCAGTCGAGGAGCGGACCCCTGCCGGCAACCTCCCGCCGCCGACCAGAGCGCCCATGATCTACTCGACCGCAGCGAGAGAGGCAAAGGATTTGCACCACGAGTGGCCAAAAACCAGCACCAACGCCAGCGTTACCGCAGGTCACGAAGT # Right flank : GGGCTCCGACCACCGGTCCCCATCAGCTCCTGTCTCCTGCCGGGCGGCGCTTTGTCGGGCCGAGCGGGTGGGGCCCGGAGCTCAGTCCCTCGGCGGCGCCGGGGCCTTCGCCGGCCCGGCCAGGTGCTCGGGTTCCAGGACGAAGACCGGGATCACGCGGGAGGTCTTCTCCTGGTACTCGGCATACGGCGGATACGCGGCGACCGCGCGCCGCCACCACTGGGCCCTCTCGTCTCCGGTGACCTCGCGGGCGATCATGCCCTGGCGTTCGGGGCCGTCCTGGAGATCCACCCGCGGGTTGGCCTTGAGGTTGAAGTACCAGACCGGGTGGTGTGGGAAGCCGCCCTTCGAGGCCACCGCCGCGTACCGGCCCTCGTGCTCCACGCGCATCAGCGGAACCTTGCGGATCCTGCCGCTCTTCGCGCCGCGCATCGTGACAATGACGACCGGCAGGCCCGTGTCCCACAGCGTTGTGCCCTGTGTGCCACCCGAACTCTCGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGATGAGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //