Array 1 157373-156933 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCQP01000003.1 Pyrodictium delaneyi strain Hulk Contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ================================================ ================== 157372 25 100.0 48 ......................... CCAAATCCGTGAGTCTTATCTCAACCTTCATCTTAGCCATGGCATCAC 157299 25 100.0 44 ......................... CTCACAGCCTTCCTCGCTGCCTCCGCCTCTCCACCGAGCTTCTC 157230 25 100.0 39 ......................... GTCTACAGCAAAGATACTCCAGCTAGACAACAACGGAGA 157166 25 100.0 44 ......................... GCGGTACTTGGGGGTTGGCACCACGACCCGGTACCAGAGGCCCC 157097 25 100.0 44 ......................... ACTCCGTTGAAGCGCTTCCTCACCCACTCCCTAAGACTCGACGT 157028 25 92.0 44 ..................T.....A CTAGGCTTGTCCTCTTGGATGGACTGAGTAAGTGGACTTGAAAA 156959 25 80.0 0 ..............G.GG.....GT | A,G [156943,156948] ========== ====== ====== ====== ========================= ================================================ ================== 7 25 96.0 44 GAATCATAACAAATAGAACTGAAAG # Left flank : CCCAGGCTCGCCCGGCTACTCGACAGACTACTAGCACTCACAAACACCCTCGGACTCGGCAGAAGCCGAGGCATAGGACTAGGAGACACACACGCACAATGGATACAACCCAAAAACAACAAAACAAAACCAAACCAGTAAACCACGAAACTAAAACAAGCCAAGATACATATTTAACACTACAACATACACACCCTCCCAGAAAAACACAGCCCATGACAGTAAGCTGTCGTGAACGGTTTAGAACCTCTTATTTCTAGCGGCCATAGCCCCAGGCACCAGGGGCAACACATAAATACCACTACACCCGTAAAACCGTTTAGAAAAACGCTAGACATGTAGAAACAACGCCATCGATGAGACCATCACCGATGATCACACTATTGCCTGGAATAGCTCCACCATAGACGCAATAAATAAACACCAGGAGAACCCAAGACTCCACAAAGCAAGGCATAAATATACGTAGCAAATACATAACATCAAGTGGACAACATGCA # Right flank : AACTGGAGATGATGTGTAGTGGCTTCTCTCGATGCGGGGGGGCTTATTGTCTGGGGTGTTGGTGAGCTGGGGTTGTAGGGATGGTTGTGTTGCTGGGCTTTGTGGGTGTTTTTGGTGGCTTGCCTGTTTTAGTATATTTGGCGTGCTTTGAGCTCGTTGAGGGAGGCTTTGACGGCTTTGCGGGCTTCGTCGTATTTTAGGTAGGCTATGGCGGCGACTGCGAGTCCGAGTGCCACGTTTATCACTAGTAGGATGATTATGGCTGCGACGAGCCATGTCTTGGGCTCTGCGTAGTAGAGGACGCGTAGCGTGCCGTCGGTGTCTCTCCTCGTTGATATCACTATGCGTACTATGTCGTCGACTGTTATCCTGTCTGGTTCCTCTATTACGCTGAGGCCCCGGAACCGTAGTAGCTCGGCGAGCCTCCTCCTGGCGTCTTCCGCGGGCATTTCCACTATGTACTCGTGGCTGTCGAGCCGGAGCATTGACGCCGCCTCCAC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCATAACAAATAGAACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 176745-175698 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCQP01000003.1 Pyrodictium delaneyi strain Hulk Contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ================================================ ================== 176744 25 100.0 48 ......................... CCAAATCCGTGAGTCTTATCTCAACCTTCATCTTAGCCATGGCATCAC 176671 25 100.0 43 ......................... ATGTTGTCAATGCTTGGTACTCTGGGCGGGTTCGGCTTGTTCT 176603 25 100.0 41 ......................... ATCTCTTGCCTGATTTCCTTCATCTTGCTAGCTAGGGACGA 176537 25 100.0 44 ......................... GCAGTATGTCGCTGCTATTCGCTAGTTCCCTCAGAAATTCGTGA 176468 25 100.0 43 ......................... TTGGTTGTACCATTTTCCTCACCGTCTTCACATACTACTGGCG 176400 25 100.0 44 ......................... TTGAGCATAATGATGTCTTTGGCTCTAACGGTTCCGTTGTATGT 176331 25 100.0 43 ......................... TCTAGGAACTCTGCCAGTGTTGCCAAGTCTTCCACGGGCTCCC 176263 25 100.0 37 ......................... ATGCAAAGGTGGGGAAATGCATGTATATGATGTCGGT 176201 25 100.0 40 ......................... TCCATCCCCCTCAGCCCTCGGGGCAGCGCTCGGGATGAAG 176136 25 100.0 48 ......................... GCGTCTCTGTGGGCAGTGTTTCCTCATCTACGTAGCCCATCTCGACAG 176063 25 100.0 44 ......................... ACCTTAACGACGCGAAAACCATGCCTGAACACCTTATCGGATAC 175994 25 100.0 44 ......................... TATCTCCCTTCCTTGATGTACTCTAACATTTTTTCGCTAATGGT 175925 25 100.0 44 ......................... CTGTCAAACTTCAGTGCCTCTGGTCTAGCAAAAAACGCTAGCCT 175856 25 100.0 43 ......................... TACTCGCCGTCCAAGTCCTTGATGAACGCCACTGAGTCCAGGT 175788 25 100.0 41 ......................... ATTAGGTAGCCCGGAGCCGGGAGAAACCAATGGCTGCTGTA 175722 25 96.0 0 .....................G... | ========== ====== ====== ====== ========================= ================================================ ================== 16 25 99.8 43 GAATCATAACAAATAGAACTGAAAG # Left flank : GCAAGGCATAAATATACGTAGCAAATACATAACATCAAGTGGACAACATGC # Right flank : GCGTTAACAATTCTGGGCTCATTCTGTGTGGGTGCAGATTATGCCCCATATCGACCAGTATACGTAGGCTATGTATGCTAGGAGGAGTATGGTTGCTAGTAGGAGTGTCCACTTTACTGTCTTTACAATGTATCTGGCCCGAGAAGGTAGGCGTTTTCTCGAGGTGTTGATTTTTCCGGAAAGTCGTATGAATAGGCTCTCTACTGCGGAGTCGCAGAGCATCCATACTGCGTAGAGCGTAGGGGAGGAGAGTGCTGTGATGGCGAAATAGGTGAAGGCGAGTACTGACTTGTCGGTACCCTCTTTGGCTAACCCGGAGACGAGGAGAGCAGCGGCTAGGCTCGGTAATATGATTGTGAAGGATATTGTTGCTGTGGTGTCGAGTATCTTTGCCTCTATGCCTCTAGTCTCGCGGCGTCTCAGCCTAGAGTCTGCACTGAGGAACAGTATGGTGAACCATGGCCCTACTAGAGCCCAGAGGAGGGCAATCTCTTTCTGCG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCATAACAAATAGAACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 11824-11384 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCQP01000005.1 Pyrodictium delaneyi strain Hulk Contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ================================================ ================== 11823 25 100.0 48 ......................... CCAAATCCGTGAGTCTTATCTCAACCTTCATCTTAGCCATGGCATCAC 11750 25 100.0 44 ......................... CTCACAGCCTTCCTCGCTGCCTCCGCCTCTCCACCGAGCTTCTC 11681 25 100.0 39 ......................... GTCTACAGCAAAGATACTCCAGCTAGACAACAACGGAGA 11617 25 100.0 44 ......................... GCGGTACTTGGGGGTTGGCACCACGACCCGGTACCAGAGGCCCC 11548 25 100.0 44 ......................... ACTCCGTTGAAGCGCTTCCTCACCCACTCCCTAAGACTCGACGT 11479 25 92.0 44 ..................T.....A CTAGGCTTGTCCTCTTGGATGGACTGAGTAAGTGGACTTGAAAA 11410 25 80.0 0 ..............G.GG.....GT | A,G [11394,11399] ========== ====== ====== ====== ========================= ================================================ ================== 7 25 96.0 44 GAATCATAACAAATAGAACTGAAAG # Left flank : CCCAGGCTCGCCCGGCTACTCGACAGACTACTAGCACTCACAAACACCCTCGGACTCGGCAGAAGCCGAGGCATAGGACTAGGAGACACACACGCACAATGGATACAACCCAAAAACAACAAAACAAAACCAAACCAGTAAACCACGAAACTAAAACAAGCCAAGATACATATTTAACACTACAACATACACACCCTCCCAGAAAAACACAGCCCATGACAGTAAGCTGTCGTGAACGGTTTAGAACCTCTTATTTCTAGCGGCCATAGCCCCAGGCACCAGGGGCAACACATAAATACCACTACACCCGTAAAACCGTTTAGAAAAACGCTAGACATGTAGAAACAACGCCATCGATGAGACCATCACCGATGATCACACTATTGCCTGGAATAGCTCCACCATAGACGCAATAAATAAACACCAGGAGAACCCAAGACTCCACAAAGCAAGGCATAAATATACGTAGCAAATACATAACATCAAGTGGACAACATGCA # Right flank : AACTGGAGATGATGTGTAGTGGCTTCTCTCGATGCGGGGGGGCTTATTGTCTGGGGTGTTGGTGAGCTGGGGTTGTAGGGATGGTTGTGTTGCTGGGCTTTGTGGGTGTTTTTGGTGGCTTGCCTGTTTTAGTATATTTGGCGTGCTTTGAGCTCGTTGAGGGAGGCTTTGACGGCTTTGCGGGCTTCGTCGTATTTTAGGTAGGCTATGGCGGCGACTGCGAGTCCGAGTGCCACGTTTATCACTAGTAGGATGATTATGGCTGCGACGAGCCATGTCTTGGGCTCTGCGTAGTAGAGGACGCGTAGCGTGCCGTCGGTGTCTCTCCTCGTTGATATCACTATGCGTACTATGTCGTCGACTGTTATCCTGTCTGGTTCCTCTATTACGCTGAGGCCCCGGAACCGTAGTAGCTCGGCGAGCCTCCTCCTGGCGTCTTCCGCGGGCATTTCCACTATGTACTCGTGGCTGTCGAGCCGGAGCATTGACGCCGCCTCCAC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCATAACAAATAGAACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 31539-30150 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCQP01000005.1 Pyrodictium delaneyi strain Hulk Contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ================================================ ================== 31538 25 100.0 41 ......................... ACTTCACCGCTGTCTCTCACTTCAACCTCTGACAGTAGATG 31472 25 100.0 45 ......................... CTCCACGTAGAGCTTCTTTACTAAGAACGACTTCCCGGCCCGTCT 31402 25 100.0 45 ......................... ATCTCAACAACCATACTCCTCTCCCCCGAAAAACACAGACCGAAG 31332 25 100.0 42 ......................... TCCGCGGAGAATGTAGCCTATAGACTTCTCTAAACCAGGTAT 31265 25 100.0 46 ......................... GCTTGCCCAGCTCCTCTGCCTTCCTCAGTGAGTAGTACTGGATGGC 31194 25 100.0 46 ......................... TCAGAACCTTGCCCATACGGGCTCACCCTCTGCGCCTGCGGCTTCT 31123 25 100.0 43 ......................... ATGTTGTCAATGCTTGGTACTCTGGGCGGGTTCGGCTTGTTCT 31055 25 100.0 41 ......................... ATCTCTTGCCTGATTTCCTTCATCTTGCTAGCTAGGGACGA 30989 25 100.0 44 ......................... GCAGTATGTCGCTGCTATTCGCTAGTTCCCTCAGAAATTCGTGA 30920 25 100.0 43 ......................... TTGGTTGTACCATTTTCCTCACCGTCTTCACATACTACTGGCG 30852 25 100.0 44 ......................... TTGAGCATAATGATGTCTTTGGCTCTAACGGTTCCGTTGTATGT 30783 25 100.0 43 ......................... TCTAGGAACTCTGCCAGTGTTGCCAAGTCTTCCACGGGCTCCC 30715 25 100.0 37 ......................... ATGCAAAGGTGGGGAAATGCATGTATATGATGTCGGT 30653 25 100.0 40 ......................... TCCATCCCCCTCAGCCCTCGGGGCAGCGCTCGGGATGAAG 30588 25 100.0 48 ......................... GCGTCTCTGTGGGCAGTGTTTCCTCATCTACGTAGCCCATCTCGACAG 30515 25 100.0 44 ......................... ACCTTAACGACGCGAAAACCATGCCTGAACACCTTATCGGATAC 30446 25 100.0 44 ......................... TATCTCCCTTCCTTGATGTACTCTAACATTTTTTCGCTAATGGT 30377 25 100.0 44 ......................... CTGTCAAACTTCAGTGCCTCTGGTCTAGCAAAAAACGCTAGCCT 30308 25 100.0 43 ......................... TACTCGCCGTCCAAGTCCTTGATGAACGCCACTGAGTCCAGGT 30240 25 100.0 41 ......................... ATTAGGTAGCCCGGAGCCGGGAGAAACCAATGGCTGCTGTA 30174 25 96.0 0 .....................G... | ========== ====== ====== ====== ========================= ================================================ ================== 21 25 99.8 43 GAATCATAACAAATAGAACTGAAAG # Left flank : TACACCCTACAATGGGCCAGAAACCTCATACAGAGAACCAGGAGGACAATAGAAAGCCCAATCCCACCCCTAGTAACACAGCCCAGAGAGAAATGCCGCTACTGCACACACCGCCACACCTGCCCATACCCAAACCTAGACTAAACCAGTAAACCACCAGGCTAAAACAAGCCAAGATACACAACCAGCGCTACACTATACACACACTCCCAGAGAAACACAGCCCATGACAGCTCCCCGCCATAGCCGGCCCGGAGCCTCTTATTTTTTGCGACCATAGCCTCAGGCACCGAGGACAAAACATAAATACAACCACAATCATCAAATAGTTTAGAAAAGCATTATGCATGCAGAAACAATACTATCGATGAGACCATCAGTAATGATCACACTATCCCCCGGCATAGCTACAATGTAGACACCCGAGACACCAGCTAGAAGACTCTCAAGAAAACAATAAATACAGCTATAACAGAGGCACATAGAGTGGACAACATGCA # Right flank : GCGTTAACAATTCTGGGCTCATTCTGTGTGGGTGCAGATTATGCCCCATATCGACCAGTATACGTAGGCTATGTATGCTAGGAGGAGTATGGTTGCTAGTAGGAGTGTCCACTTTACTGTCTTTACAATGTATCTGGCCCGAGAAGGTAGGCGTTTTCTCGAGGTGTTGATTTTTCCGGAAAGTCGTATGAATAGGCTCTCTACTGCGGAGTCGCAGAGCATCCATACTGCGTAGAGCGTAGGGGAGGAGAGTGCTGTGATGGCGAAATAGGTGAAGGCGAGTACTGACTTGTCGGTACCCTCTTTGGCTAACCCGGAGACGAGGAGAGCAGCGGCTAGGCTCGGTAATATGATTGTGAAGGATATTGTTGCTGTGGTGTCGAGTATCTTTGCCTCTATGCCTCTAGTCTCGCGGCGTCTCAGCCTAGAGTCTGCACTGAGGAACAGTATGGTGAACCATGGCCCTACTAGAGCCCAGAGGAGGGCAATCTCTTTCTGCG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCATAACAAATAGAACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 3 35832-36913 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCQP01000005.1 Pyrodictium delaneyi strain Hulk Contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ===================================================== ================== 35832 25 100.0 41 ......................... ATGACTCTGTAGTCCTGACAAATGGTGTACTTACATATTCT 35898 25 100.0 48 ......................... CAGAGAATATTGCTGGTGGTAGGTAGCGCGATGGTAGATTTTGCACCA 35971 25 100.0 42 ......................... CCCAGATCACACGAATGTACTCACCCAATCCTCTCCTAAACG 36038 25 100.0 46 ......................... GCAGTAGCTGGCGGCTGCTCATCTAGGCTGACGACTACGAAGTCCC 36109 25 100.0 47 ......................... CGAGTTAGGCTGGTCCTTGGAGGCTTAGCTGGCATCTTTGCTCTCGT 36181 25 100.0 48 ......................... GAAGAATCCGTGGGGGCATTAGGTCAAGCGAAAAAGCAGCATCATAGA 36254 25 100.0 47 ......................... ATGAGAAAGTGTATCTCATCGGCTACGTAGATTAACTCGAGGGGCCA 36326 25 100.0 53 ......................... AAATGCGACCTCATAGAGTTCTTCGCCGGGTACGTCGTGGGCGACGCGCTAGT 36404 25 100.0 44 ......................... TGTATCTTGTAGCCCTGCTTCTCAAGTTTTTCCTTACCTTCCAT 36473 25 100.0 44 ......................... TTCGACTGTATGGTCTTTGTAGCTAGCATCTCGTTCACAGTGCG 36542 25 100.0 45 ......................... GTGAATGAGGGGCTCCTCGGGCGTGAGGAGCGCCAACTCCCGAAG 36612 25 100.0 47 ......................... AGCATCGCTGCCGGCCACCCCCGTGAGCCATCTTAGGAATGCCTTTG 36684 25 100.0 43 ......................... ACTATGGCTTCTAGGAGTGCCTTAGCTTCCTCAACATCACCAT 36752 25 100.0 44 ......................... ACACGTATCATTTGTGCCTCCTCGTACCCGACTTCAGTTACTAG 36821 25 100.0 43 ......................... TCCTGCTAGCCGACGTAGCGGTCGAGGCCGCTGTTCACGCTCT 36889 25 88.0 0 .......GG..............T. | ========== ====== ====== ====== ========================= ===================================================== ================== 16 25 99.2 46 GAATCATAACAAATAGAACTGAAAG # Left flank : CAAGCCTCAACCTCTCAGAGCGGACAATCCGAAGACACACCCGGACACTCCAACGACTACAACTCCTAACCCAGCGAGCAAACCTAATCCTACCAACACCATGGCTAACACTCTACCACAAAACAAACACCTAACACAACAAACACAAGGTTAAAACAAGCTACCAAGCCAGACCAATAGTATAGAAACCACACACTCCCAGAGAAACATGATCCATGACAGCTCCTCGTCATAGCCGGCCCAGAGCCTCTTATTTTTGGCGGTCATAGCCCCAGGCACCGAGGACAACACATAAATATCCTCTCCACCATGGAACTTGTTAGAAAAACGCTAAACACGTAGAAACAATGCCATCGATGGAACCATCAGCGATGACCACACTATCCACCGGCATGGATAGGATGCAGACACCTCTAACACGCAAAGGAAGAAGCACTATAAACCCAGGCAAAGAAATAAATACATGCACCACAACAACTACACTAGACAGAGAAAATGCA # Right flank : GGAGTGTAATTTGTGGCCGTTGTGTGCGGTGGAGGGTGGTTCTAGGTGTCTTTTTGTGTTCTTAGAGTTGTTCTTAGAGTCTTGTTAGGTGTGCTGTGCTGGGGTTTTGGATTGTTTTGTCGCAGGGCTTGGTTGCTCTGCGTATCCGGTCGTACTCGTGTATGGGTATTATCGAGGCTGTGATGGTTGCGCCTTTTCTTAGGGCTTCGAGGGCTGCTGCTATGCTCATGAGTTTCCGGCCGCCTGTGACGTCTAGTATCGTGTCTGGGCCGAGGAGCCTGGATAGTGTTTTTCTCAGCTGGGTGATGTCCTGGGGGCCTGTTATGTCGGTGGAGGGGAGTAGTAGGAGGCGTGTAGCTGGTGGTGCTGGTGGTGCTTCTTCTCCGGGGCAGGGGCAGCTCCTGGCGATCTCTATCGCCTCGGTGCCCCATTCGTGGCGTGTGGCAACCACTACTACCTCGTCCACCTGTATGCCTTTCCGGCGTAGGAGGCAGAGGGTG # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCATAACAAATAGAACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 221354-224297 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCQP01000006.1 Pyrodictium delaneyi strain Hulk Contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ================================================= ================== 221354 25 100.0 40 ......................... CCGGTACTAGTATACGATAGGACAACGGCTGGCCTATCTT 221419 25 100.0 38 ......................... CGAGAGAGCGGAGAACATTAGGCTAAAGTCGTCACAGT 221482 25 100.0 39 ......................... TGCTGGTACTCGTGTCGCTGCTAGAGCTGGAGTCGCTGG 221546 25 100.0 43 ......................... CTACGCTGCTGCCGGTGCCGGCGGCCTAGCCCTGGTCATGGGT 221614 25 100.0 42 ......................... TTTAGCTGGAATATCGTGATAGCCACAGCAGGGTTGAAGACC 221681 25 100.0 43 ......................... GGTGTGTCGTGAGACGTGTAGCCTGATGGCTTTTATGCTGTTC 221749 25 100.0 46 ......................... TTATGTTATCACGCCAAAGGAGTTCCGGGAGAAGGTGATTCCTTGG 221820 25 100.0 43 ......................... ACCTGGAGAACTGGCTCTCTAAGCGCTACGACAAGATAACGAT 221888 25 100.0 45 ......................... TCTTAATGGGCTCGGAGCTGCCAGCATACATTATATAGACGTAGT 221958 25 100.0 45 ......................... GCTACCACTAGCTTCCTCCGGGTGAGCTTAGCCGGTATCCGTGCC 222028 25 100.0 46 ......................... CTTTTGCAACACCCACGAGGTCAGCTACAAGCCTTACATCCGATTT 222099 25 100.0 45 ......................... CCAAATACATACATCTATACTACCGCATCCCGCACATGTACGACG 222169 25 100.0 44 ......................... CAGGACATGCGTGCTAGGGCCGCTCAGCAGTGCATTGCGGAGGG 222238 25 100.0 41 ......................... TCTAAGCAATGGCGTCCCAGTGTATGCATGGTACAAGAACT 222304 25 100.0 46 ......................... CCTAACAAAGAAGCGCAACCTCCTAGCGATGGACCCAGAGGAGCAG 222375 25 100.0 49 ......................... CTTTAGATTGTTCCTCTATCTCCTCGGCGAGCTCTTCTACTTTCTTCAT 222449 25 100.0 45 ......................... CTGTTATGCGGTTTGCCTGTGCCACCTGTTCTACAACCTTTGAGT 222519 25 100.0 43 ......................... ATTACCCCAGCCGCCAGACCCCCGCCCACGGCGAGGGCGCTGG 222587 25 100.0 42 ......................... TAGAGTTGTTCCATATAGACCCCCGAAAAAGGCAGGCCAGAA 222654 25 100.0 39 ......................... TCACGATTACGAGGCCCACGCCGGCTTTTTCATACGCAA 222718 25 100.0 43 ......................... TCTCAACCTCCCTCGCGATCTCTGGCCTCAGCATCCTCACCGG 222786 25 100.0 43 ......................... TTCTTAAACAACATCCTTGGCTCCTTGAATCCAAACACTATAG 222854 25 100.0 45 ......................... GCTGGATAACGTCGTGGCGCTTCCGCTGGCAGCGTACAGGGAGTC 222924 25 100.0 43 ......................... GTCGTTTGGCATGATTAAGACTGACTGGGTGGAGGTGAGGCTG 222992 25 100.0 45 ......................... GGAAGGGGCCGGCTATCTGCTTGGTCTCCTTCACTACGTCGTCGC 223062 25 100.0 37 ......................... ACGCACCGCCTTATCGTGAACTCTAGATCCTCCACAT 223124 25 100.0 43 ......................... TGTCGCGGCTGTTGCGGCAGCGATAGTCTTTGTAGCGTACCAG 223192 25 100.0 36 ......................... CTATGTGGTTGACTGCTATCCTGATGAAGTGTAGTA 223253 25 100.0 43 ......................... GTACTAGTGCTAGCTAGAAACCCATGGCTCAGCGGTAGGCTAG 223321 25 100.0 40 ......................... TCTCCTCCTCGTATACTCCTAGCCCACGTGCTATGCTTGG 223386 25 100.0 44 ......................... CTGGAGGAACACACCGCCAATGTGTCTAGCGAGGGGTGAGCCCG 223455 25 100.0 46 ......................... GGGTGTGGTTGTTGAACCTGGAGACGCTTCTGATAAAGAAGTGCTG 223526 25 100.0 40 ......................... CCAGGCTGGGTATCTCTCTCTCGACTATCTGATTGAACTT 223591 25 100.0 43 ......................... TACGTTTCCTTCCAACGGGCAAATTGTTACAACCTCTGTATTG 223659 25 100.0 38 ......................... ACACATGGTTGTTGCTGTTCATTACAAACTTGGGCGTG 223722 25 100.0 45 ......................... GTGAGAAGCGTGGCGGCGCTGGAGTTTGAGCTACCCCCCGTAAAG 223792 25 100.0 44 ......................... CTCTTCGGCAGTATTCTGCGCTCGAGCAGCCCCGCCTCTGCCAG 223861 25 100.0 44 ......................... GATGGGACATGGTACACGCTGGCAAGCGAGGAAGTGCAGGTAGT 223930 25 100.0 45 ......................... TTGCTGAGGGTTATCGGAATCTGCGTCGTGCCGCTGATGCTCGTG 224000 25 100.0 44 ......................... CGCTAGCATAGCCCATCAGGCGCCACCCCTCTGCTTCTCTAGCT 224069 25 100.0 46 ......................... ACCGCCAGGATGGCCACGTCCACGACCAGGCTGCTGGCCGCTCCCG 224140 25 100.0 40 ......................... GTACCGCTCTTGCTGCCCTGTATGGTGTAGCCCAGTGGCG 224205 25 100.0 43 ......................... CTTAGCAACATCATCACCACAACCTACATCTATGTGGTGGAGA 224273 25 80.0 0 A..C...........CG.C...... | ========== ====== ====== ====== ========================= ================================================= ================== 44 25 99.5 43 GCATAACTCAAAAGAGAATTGTAAG # Left flank : CCACGCAGCCTGCCCCAGAGCCCTCGCCGAAGCACTACACCAGCTACTAGAAGCAGGACTCTACACCGGCGCCGGAGCAAGCCCAGGCCTAGGCCTAGGCGAAATACACCAAGTCAAGATAGAGAAGCCCCGCCACCGGATACCACCTCCGCTCGAGCCATGGATCGAAGAAAAGGAAAGCAACTAGCCAGAGCAGGCAATGACGACACAACATTAACGCTATTCTCTCCCAGCTTTTGTCTGCTGTGTCGATTCTCTGTTCTGGGGTGTTTTGGATCTGGTTTCAACTCTATGGGGACACGTAATTAGTGGATTTGAAAGTGTTCTTGGGAACACGCCTACACCCTTATAAGTCTTCATGGGAACACACTTCACGGAGACACAGTGCCCGACGGTAACGGAATTGAGACTGTTCCCAAGAAGAAGAAAACAAATAAATACAGGAACCATAGAATCCTACACCACCAGAACCCAACAAGAAACCATACATTCCACACAAA # Right flank : GTATACCGATTAGGATCTATAGCCTTAGTCTAGTATGGTGTTGTGTCATTGCAACATAGATGTGATGGAGTTCTCTAGCTAGCTGCGGTCGTCTTGATAGTAGCTGTAGCGTCTTTTCGGGGTTCTCTAGTATTTCTAGCAACTGGTAAGCGTTGTGTATAGTCCTTGCGAGTACTCCCTGTCTACCCCACTCTGCTAGCGCTTCGGGGCTAGCTCTGCATGCTGGGCAGTTGCAGCGAGCTGCTATCTCTTGGGGGGTTGCGCGTGGTCTTCCCGGGGTCTGGCGGGGCGCTGTGAGGGCCATTGCAAGTGTCTCGGGGTGCCGGGTTAGCCCGTAGCGGGCGTCTTGTAGGGGGCTGCTAGTGTCTGCAGTGTCTGCCAGCCTTGTGTGGGCTAGTGCTGCGAGGAGGCTGTTACCGGCCCCAAATACGTGGATGCGCTTATCGATGTGTACTCGTGCATAGTGGATGAGCCTCAGAGCTTTGGCTGGCTGGTAGCGT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCATAACTCAAAAGAGAATTGTAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 243829-242391 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCQP01000006.1 Pyrodictium delaneyi strain Hulk Contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================== ================== 243828 25 100.0 44 ......................... GGTGACGCGGTTAAGACTGAGATAGATGACCTTGGGAAGGTCTA 243759 25 100.0 42 ......................... ATCAGAGTCCTTCTTCCGGTTACTAGCTCTGTGTATCGCTTT 243692 25 100.0 43 ......................... CGACCACGGTCACCGCTTCCCGCCCTCCTTCTCGTCGTCCACG 243624 25 100.0 43 ......................... CCGAGCGGCGGATGTCGTGCGGATGAATGTCCTTCCCCAGCAG 243556 25 100.0 41 ......................... GTCGGGGCGCTCTGGGACGCCCCGCCGCGGCCGCGCCGCGG 243490 25 100.0 45 ......................... ACTAATGCTAGCCGTTACCGACGCGGTGCTAAAGATCAAGATTCT 243420 25 100.0 46 ......................... GCATACTGGATGTCCCTGGGGCTCTCAGACGCCACGTTGAGCACTA 243349 25 100.0 43 ......................... TACTCTTCCCGCCCAGCCTGGCGCCGATGGCCGGCGTGGGCTT 243281 25 100.0 40 ......................... CTAGCCGGCTGCACTTCCTGGCGAAGAGCCTACCCTCACG 243216 25 100.0 42 ......................... TGTGTTCTTCTGCACAGTCCTTGTCGCACGCCTCTATGCAGT 243149 25 100.0 45 ......................... TTTTTGCCATAGTAGCCGTAGTAAACAGCTGCTGCACGAGATCGG 243079 25 100.0 42 ......................... TTTATGTACATGTAGTCGACGGGGCTGCCGTCAACAGTCGCG 243012 25 100.0 38 ......................... TTCTCTGGAGAAGGACTTTGTACGACTATCTTCAAGAA 242949 25 100.0 39 ......................... ATGGCTCTCACCACGCTACACGCTTAACCTTCCAAACAA 242885 25 100.0 38 ......................... GGAGGTTGTCGAGTTCAACCCGGAGAACGTCCTGTCGA 242822 25 100.0 39 ......................... CCGAAGAAATGTGTGGGCTAGACGCTAGAACAGGGGCAC 242758 25 100.0 43 ......................... CTCAGCACAGGCAGGGCGCCCGGCCACGGTTTCAGGCCCGGGA 242690 25 100.0 42 ......................... ACGCGCCGCGCTAATAGCCGGCAGGATATTCGCAAAGTACCG 242623 25 100.0 45 ......................... GTGTCACGTAGCATGCGCTCAGCGTGCCGTACGCACCATCGGCAT 242553 25 100.0 46 ......................... CGTGGTTCTCGTGCCGCGAGGTGGAGTTCACCAACATACGCGTCAA 242482 25 96.0 41 ........................T GCAATGCTGCCGTGCCAGATGTAGTCTCAACAACGACGAAA 242416 25 80.0 0 ..T.G......CG.......A.... | C [242395] ========== ====== ====== ====== ========================= ============================================== ================== 22 25 98.9 42 GCATAACTCAAAAGAGAATTGTAAG # Left flank : CCTATTCGGAGTTCACCCTCACTAAGTCTTATAGATGTTGCAACCACGATATATCACCACCTCTAGGCTACAGGCAGTAAGAGCGTGAACAGAGTGCACTAAAATACTACGTGGCGATGAAACAGAACCAGATGTTGATAGGAAATAACTTCACTTATGGTCTCACACTATGCCACATAGCAATTCATGTAGCCCGAGGCAGTACTAGTATAGCTAACGCTGCGTTACTCTTTCTTGGTTTTGTCTGCTGTGTTGATTCTCTGTTCTGAAGTGTTTCGACTCCTCTTTCTAATCTATGGGAACACTTCTTGGCTGGATTTGAAAGCTGCCGTGGGGGCACGCCAGGCCCCTAATAAGCATTCATGGGAACACATCCCACGTACACGAAGTATACGATGGTAGGGATCGGGGCTGTTCCCAAGGAGGAGAAACAAATAAATACAGGAACTATAGAATCCTACACCACTAGACCCAACAGGGAACCATACATTCCACACAAA # Right flank : ATTACAAGCTTAGGGAGTCTAGACTTGTGATTAATAATGTAAACAGAGATATTATTATGTCTGGAATTAAACGTCTATAAGTGGCCGGCAGGGATACAGAAGGCCAGACCGGCCTAGCAGTTTCTGCTTTCATGTCGTACTCGTGGAGCTTGTTGAACTCCTCACGGCGCTCTTTAATGGCTCTTTTTATGATTCTTATATGATAATGTTTGTGTCTAATGCTTTTACTCATAGAGCATGCCTATGCTAGGTTGAGGGTGTTTCTACATTAGGCTCGGTTATGGATGCTTTGTATTTAGGTTTAGGGCTGGAATGTCTATATGTGTTTCTTTGCTGTCTCTTTTGGCTACCAGCTTGACTCTGAACTCTTTATTGGGTAGGAGCTTCTCTAGGGTCTTTAGCGCAACTAGTGTCTGTAGTACTGCGTAGACGGGTTCACCTGGTTCCTCGCTGGCTAGGCTACTTGTGGCTACAAGTACTGGCTTTGCTATCTTTGATGT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCATAACTCAAAAGAGAATTGTAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.70,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //