Array 1 79916-80799 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMSP01000001.1 Streptomyces cavourensis strain JCM 4298 sequence01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 79916 29 100.0 32 ............................. CGAGGCCAGGGGGGAGGTGTCTTGGGAGGATC 79977 29 100.0 32 ............................. CCGTACTCCGGGGAGGACCCGCCGGAGCACTA 80038 29 100.0 32 ............................. CGTGCTCGCGTCCTGGAGGCGGTCCGCTCCGG 80099 29 100.0 32 ............................. GCACCACGCAACCTCACCCGGTCCTGGACCAT 80160 29 100.0 32 ............................. GTCAGGTTGAGTACGGGCTGCTGACGGACGAT 80221 29 100.0 32 ............................. GGCTGGCACGCGCACTACCACGTGCTGCTGTT 80282 29 100.0 32 ............................. CGGGGGAACGGGTTCCCGGCCGCGTGGGTGAA 80343 29 100.0 32 ............................. CGGGCCCCGTACCGCTGGACCTGCGCGTCGGC 80404 29 100.0 32 ............................. CGCCCGCGGCTGTCGCGGATGCTGCCGTCGGC 80465 29 93.1 33 ........................A...A CATGGCGGCGGTCCCGCTCGGTTTCAAGCCCTC 80527 29 100.0 32 ............................. TTGGAGCGCATGTTGACGGCCGGTGCGTGGTC 80588 29 100.0 32 ............................. CCCACGTCCCCGTACTACGGGCTGATCGGACG 80649 29 100.0 32 ............................. CGCATGACGGCGAGGACGCTGGCGTTGGTCCC 80710 29 100.0 32 ............................. GTGGCCGGGTCGACCGGGCCGGGCGAGGTGGG 80771 29 89.7 0 .....................A.AG.... | ========== ====== ====== ====== ============================= ================================= ================== 15 29 98.9 32 GTCGTCCCCGCGCACGCGGGGGTGTTCCC # Left flank : AGAACACCTCGCCCGACACTCCGGCCCCGACCGCCCGCCGCATCCTTATGGAATGCACCGACTGCGGCCGCCCCGGCCAATCAGAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCGCGAAGCCCACAGCACGAAGCCCGGTGAACTCCCGGCCCACCCCACTGAAGCCGCCGACGTCAAGGCCCGCATGAGTAACCTTCGCGACCTGCTCAGAACCGTCTGAGGCTGAAGCCTGCAAGGTCAGTTCGCGCCAGCAGAGAGCGCGGACACGTATCGGGGCACTGGCGCGGCAACCGTTCGCCTTCACAGTTTCCTGGGCAGATGCCGCACGGCCTTCCTTGAGGAAGGGGGCGCCCCCGGGGGTGGTTGGCGGGCAGAATGACCCCTGGCATGCCCAGTCTCGGGTAAGGGCTGGTTGCAACGCGGGAGAGATATGTCCGTTTCTCAAGAAGTAAGCAAAAACAGCCCCTCAGCCACATAAACCCGCAGGTCACGAACT # Right flank : CGGCCGCCCGAAACCGGAAATCGATCATTTTCTGTCGAGTTCGAATCACTTTTGAACAACTGGCCCCTACAGGGCATTTCCGCATGTCAAATGCCCACATGCCCGCGATCGACACGGAACTCCTCACAGCGTTCCGCCACCTCTCCCCCACCGCCCGCACCCCCTGGGGCAAGCACGATCGGCCGACCGAACAGTGGCTCCCCCTGTGGCGGCACATGGCCGACAGTGCAGCCGTGGCAGGCAGGCTCTGGGACGAGTGGGTGCCCGACAACGTGAAGGAGCTGGTCGCGGACGTCTTCCCTCAAGGGGCCGACGACGCACGGCAGGTGGCCGTATACCTCGCCTGTGTGCACGACATCGGCAAGGCCACCCCCGCCTTCGCCTGTCAGGTGGACGGGCTCGCGGACCGGATGCGGGCGGCCGGGCTCGAGATGCCGTATCTGAAGCAGTTCGGGGCGGATCGCAGGATGGCTCCGCACGGGCTGGCCGGGCAACTGCTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 128-1134 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMSP01000013.1 Streptomyces cavourensis strain JCM 4298 sequence13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 128 30 93.3 31 .....................A.......C GCCTGACAGGCGCCCGTACGGCCCCCGATGA 189 30 96.7 31 .....................A........ AGCGACGTTGCGAAAGCGGCGACCGCCGTGC 250 30 96.7 31 .....................A........ GCGTGACCGAGGAGCGGCCACCAACCCACGG 311 30 96.7 31 .............................C AGCAACACCCCCCACCGCACCACCCTTCATC 372 30 96.7 31 .............................C CCGACGGCCGGATGGCGAAGCTCAAGACCGC 433 30 100.0 31 .............................. GGTGGAACCCGATCGAAGGCGGGGTGGGCGA 494 30 93.3 31 ...............A.....C........ ACCCGGAACCGGAGATCGTCATCGACGACAC 555 30 96.7 31 .............................A CGGAGAAAGCCGGGCACGGGCCGCCGCTGGA 616 30 100.0 31 .............................. TCGGCGGCCCGTTCGTCATGGCTGAGCAGCT 677 30 90.0 31 .....G.......GT............... GGCACGTCGTCCGCGGCTACGACGGGCTGTC 738 30 90.0 31 .............GT.............A. TTACGCAGAGGTCTCCGCATATGCCGCTGCG 799 30 86.7 32 ....G.A......GT............... ACCTCCACCCCAATCTCGTGCAGTTGGAGTGG 861 30 93.3 31 ...........A.................T TGAGGGGTACGTCCGCTCCACCCCACGCGGC 922 30 93.3 31 ........................A....A TCGCGTCGATGCTCGCGACGACCGTTGTGCC 983 30 96.7 31 ............................T. CGACGGGTGCATTTCGCATGGCCGGGGGCCA 1044 30 90.0 31 ............A.T..............T AGGTGAGCGGTGGGGTTCGTGGAACGGTCTG 1105 29 83.3 0 ...........A.G.........-.C...T | A [1132] ========== ====== ====== ====== ============================== ================================ ================== 17 30 93.7 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : TCTGAACCGGACGGCACCCTATTCAGGGGAACGGGGGTCGGCCTTGGCAACCGAGGGGCAGAATCGCCTCTGGCAGGCGAGCAGTCCGCCAACGACGATCGGGCCCCGGCTCCCCCTCTCTGCGAGGG # Right flank : TCAACGAAGCTGGGCTCCTGCCGGTCGCGGCCCTCGGCGGATGGCGGCCGCCGGAGAGTGTCCGGCTGATCATGACGGCCCGCGGAGGGTCGGGCCGTAGCTACCTGGCCACCAGCCGTGACGGTGTGGATACGGCGCCCCGTATCATCCCGCCATGATCATGCTATCTGTTGACCCCGTCTCGCGGAGCTACGCCGATGGCCAGGCAGTGGGGCAGCTTCTGGTTCTCGCCGTTGCTCTGGTCCTTGTCTGGGTCGTCACCCGGACCTGGCGGCGAGGTCCGGCCCCGGACGGTCCGGACGACGTGGAGAGAGCCACCGCCATCGCCGTACGGCGTGGCAACATCGTCCGCGGAGTACTGCTGGCCGTAGCCGCCGCCGGGCTGATAGGGATTTTCACCGGCAGGGGATACCAACCTGCCGCAGAGGCGGCCCCCACCGCCCCAAAGCCTGTCGCCCAGTCGCCCTCCGCCACGACGGGGCCTGCGGAGATCAAGCGCG # Questionable array : NO Score: 5.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.21, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [23.3-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2253-1317 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMSP01000016.1 Streptomyces cavourensis strain JCM 4298 sequence16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 2252 30 96.7 31 ...G.......................... GGGGCCTCCCGGATTGCGTCAGTTGTCGAAA 2191 30 96.7 31 .............................T TCCAAGGGGCCTTGATCGAATTCATGGACGC 2130 30 100.0 31 .............................. TCACCTGTCTCGCCGTAGCTAGCGGCGCGAG 2069 30 96.7 31 .............................T GACCATGGCGGTGGGCCCGTCCGGCGAGCGG 2008 30 100.0 31 .............................. CGCAGGAAGCCGGAAGACACGACAGCCCACT 1947 30 100.0 31 .............................. ACATCGCCGCCGCCTCCGAAATCTTCGTGAA 1886 30 96.7 31 .............................T CGCGGACACGGGCCTCGGCGCGGTCGCCACG 1825 30 96.7 31 .............................A AGGGGCTCAGCTACGCGAACGGGGGAATCCG 1764 30 100.0 31 .............................. GGAGTGCCCGGGGGTACGTCCAGCCGGTGGG 1703 30 100.0 31 .............................. AGCACGGCGAAATCGGCCCCGTCCTGGGCTT 1642 30 93.3 29 ...G........................G. GACCGTATCCAGGACGCCGAAGCCATCCA 1583 30 96.7 31 ...G.......................... CCTGCCGCTCGGCCCGCCGCCGCTCCACCCG 1522 30 90.0 31 ...GC........................C GGCGCCAGGAGGACGCCGCCGAGCGGCACGC 1461 30 93.3 25 ...G.........................T CCCGGTGCCGCCCGTGTCGGGGGCG 1406 30 93.3 31 .G.G.......................... GGACGCTGCTGGTCTACGACGAGATGCTGAC 1345 29 83.3 0 ...G..................CA-....C | ========== ====== ====== ====== ============================== =============================== ================== 16 30 95.8 31 GTGATCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : GCTGCCAGAGGAGGAAATCGCCATCAAACTTGCCGGATTGCCCGGCTGGGCACGAGAAGGGGACGCGATCACCCGCACGTTTGGGATCCGCTACCACGGCGGCGTCGCGATGATCGTGAACGTCGCGGACGTCGAACGGCTCATCGGCCACCACGCGGACATCGACCTGCGCTGGGACCACGTGAGGTTCCGCATCACGACACACGACGCCGGACACCGCCTCACCACCGCCGACTTCGACCTGGCCGCCCGGATCGACCGCATCGCGACGGCACACGAAGCGCAACCGCACAACTCTTGATCACGGCACCCGCGTTGTACCCGCAATGTTCGGTGAACGGCCTTTCGGCGGTGAAGATGAGGCACTCTGGGCGTGCGGCCGGGAGAAGCCCCGTCCGCCGCATTCAGCCTCGGGACATATACAGAAAGGGGATATGTCCGTTTCTCTGGAAGCAAGTAAAAACATCCCCTCAGCCACCTAAACCCGCAGGTCACGAACT # Right flank : GCCTTGACCGTCTCTCGGGTCTCAAGCTTCGGGTTTCGAGGCCGGTTCGTTCACTCTTTCTCGTGTACGGGTACGGGGCCCGGCCCGAAGCTTGGGCTCCGAGACCCGGGCATCGGGACACGAGGCCCGGGATTCGAGCGCCTTCTTTAACCGGTAGGTAAGGGAGGGGGTTTGGGAAAACCTCCCGCCCTCCCCACCCAGGTCACAGCTGGGGAAGTATGACTAATGGTGACGGCTTGCGGCGGAGTGTCACGAGTGCTTACGGTTCGAGAACTAAGCGACCCCGACAGGTGTTGGAAGCACCAGGCCGGGGTCTAACCGCAAGATCGCTAACGATGAAGGACGATCCCGTGGCTACCCAGCACATTAGCTCTGCCCTGCAACCCCCCGCACTCTCCGACGCGTACCCCATGGCGAATCCGGGCTACGGAAAGCGCTCGGCACCGGACCAACTACCCCGCAGCGCAAAGGATTTTGCCTTACTGCCAACGCGTGAGCGG # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 11900-11444 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMSP01000016.1 Streptomyces cavourensis strain JCM 4298 sequence16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11899 29 100.0 32 ............................. CGGGCAACCGGGTGCAACCGGGTGGATCAACC 11838 29 100.0 32 ............................. TCCTCATGCTCCGGGCCGCGCTCCGCAACCAG 11777 29 100.0 32 ............................. CAGCTCATCTGGATGTGGAACGGCCTGTCCTT 11716 29 100.0 32 ............................. CACCGTCCGATCGGGCTGTTCTCGTCGGCCAG 11655 29 100.0 32 ............................. ACCCCGTTCGGAGACATGGGCTGGGCACTCCC 11594 29 100.0 32 ............................. CTGCTGCACTCCAAGGGCGTCGCCGTGGTCCA 11533 29 100.0 32 ............................. GGGAACCGAGTCAAGCGGGCCGCAGCCGAACA 11472 29 82.8 0 .....................A.AGC..A | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.8 32 GTGGTCCCCGCGCGTGCGGGGGTGTTCCC # Left flank : ACCCCGAGCCTTTCCTCGACCACTACCAACTCCTGCTCCCCAGCGGGTGCTTCACCGAGCCACTGCTCCAGCCGCCCTTCCTCCTCCAGCAGATCCCACTGGTCCTCGTCCAGCAGGTCGGCCAGTTCCCGGTCGGAAGCCTCCTCTTTCATGTACCGCTCGTCGTACTGCTCCAGAAAGCGACGCCACTCCTCGGGCGTGGTCAGGACGTCAGTAACTTCACTGTCTTCAGGCTTGGTTGTCTCATCCATGCGACTCATGCTCGCAGGCGCCTATGACAACGCCCCCTGCCTCCGGGGCGGCGGACGGGCGACGGGAGCCGCACCGACTGCACGTGGCTGGCGCTCCTGTGCCACGCGCAGCACCGAGGAAGGGCAGAATCACTCCTGGGGTATTCGGCTCAAGCAGGGGCCCTTTCCCGAGACCGGAGGGATATGTCCGTTTCTCAAGAAGTAAGCAAAAACAGCCCCTCAGCCACATAAACCCGCAGGCCACGAACT # Right flank : GAAGCTCACAAGGCCCACAGGACCCGCCGTACCCGAATGAAGCCATCGGGCGTCGGCTGACGGCCTGCCATGCCTCCGTGCCGCCCACGACCCGAGCACCGAGCACCGAGCACCGAGCACCGAGCACACGTAACGCCGTCCTCCTCCGACTCGTTGTCGCGAGAGGCGAGAGACATGGGTGGTCGACGCCCGCGGAGCCCAGGAGGCTTGGGAATCATGATCGAAGAGGGCGGCCCCGGGGGATGCCCGGCATCGCGGGAGGAGCCGCGCGTCGCGCACTCCCGTACGCTGCGGTTCTGGCTCGATCCGGCGAATATCGCGGTGCGCCTCGGCCAAGCAGGCCCCGTCGCCCGGACGAAGGCCGGACCGGCGGTCGCCTTCCAGGTCAACGACCCGTCGCTGCTCAGAAAAGTCGGCTGCGGGGAGGACACCTTCCAGGCCTGGAGCGCGGACCCGTGCCTTCGGGACTTCACCGGGAACGGTTTCGCCGGATCCGAGGG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 113891-112580 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMSP01000025.1 Streptomyces cavourensis strain JCM 4298 sequence25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 113890 29 100.0 32 ............................. ATCGAGTGGTAGCCGAACCCCGGGTCGGACTG 113829 29 100.0 32 ............................. AGGTCCAGGGTCGCGGGCCAAGCCCACTGGCG 113768 29 100.0 32 ............................. TCGGCCTTGAGCCGCCGCCAGGGCCGCCCGCT 113707 29 100.0 32 ............................. GAGTAGCCGCCGTACTTGTTGATCAGGTAGAG 113646 29 100.0 32 ............................. GAGGACGGCCGGTACGACATCGGCGGCCACGA 113585 29 100.0 32 ............................. AAGGCCACCGCCCAGATCAAGAGCAGCCTCGG 113524 29 100.0 32 ............................. TATGTCGTCATGGCCCACCACCGCCGATGCGG 113463 29 100.0 32 ............................. CGGGGGGATCAACCGGACGGACCGGACACGTG 113402 29 100.0 33 ............................. GTCTGGGGAGAGCTGCTGCCCGAGATGGCGGTG 113340 29 100.0 32 ............................. TGACGGACTGGGAAGCGGAGTTGGCGGTCATT 113279 29 100.0 32 ............................. GTAAACCGCCCCGCACCCGAGTAGGTGCGGGG 113218 29 100.0 32 ............................. CAGCCAGCAGGAGAGGGAGCCCGCCGACGACC 113157 29 100.0 32 ............................. GCCCCGGACAGTCGCTCTGCGAACGCGTCGAA 113096 29 100.0 32 ............................. CTCCGGCGCCCGTGGACCCGCGGACCGTTCAG 113035 29 100.0 32 ............................. GCGTACGTCTCCCTGGCGGACGAGGACGACTC 112974 29 100.0 32 ............................. TTCGAGGCCGGGTTCACGGATGAGACGGCCGA 112913 29 100.0 32 ............................. GCCAGGGACAGCACGTCGGTACCGGACAGCTC 112852 29 100.0 32 ............................. GACCAGCTCGGGCACGCGGCAGGCGACGCCGT 112791 29 100.0 32 ............................. CTTCTTGAGGTCGATGACCACCAGGGCATGAG 112730 29 100.0 32 ............................. GCGTACGCCAGGATCGGCGCACCCCGCTCCTT 112669 29 96.6 32 .........................C... TCGCCGGGGAACTGTTCCACCACACCGGCAAG 112608 29 96.6 0 .........................C... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.7 32 GTGGTCCCCGCGCACGCGGGGATGGTCCC # Left flank : TCTGAACCGGACGGCACCCTATTCAGGGGAACGGGGGTCGGCCTTGGCAACCGAGGGGCAGAATCGCCTCTGGCAGGGCGAGCAGCCGACCCAACGGCGATCAACACGGTGGGGGATATGTCCGTTTCCCAAGAAGTAAGTAAAAACAGCACTCCGGCCGGATAAACCCGCAGGTCACGAAC # Right flank : CCGGCATACGTCGAGGTGGGACGGAAGGTCGTGTGGTCCCCGCGCGCGGGGCCCCACCCGATCCGGCTCTCCGCCACTGCCTGCCTCCGCCGGATTCGCGGTGGCCGGGCCTTCACCGTCGGCCTCTCGACGGTGAAGGCCCGGCAAGTGGGTACGGTTGAACGGCAGTCGGCCGGCCAGGCCGGCCGGCCCGAAAGGTGAGCGAGCTAGAGGAACCGCCCCGTTCGCGGTGCTCGTCGTCGCCTTCGTCCAGTGCCCGTGCCGGTCACGCCTTCGTGAGATATTCCAAGAGACGGAAGTTGGCGTTGCTGCCGTTGCTGACGAACTCCAGGACACCCAGCTCGGTGCGGATGAGACCGGCCTCCTCCTCCAACTCGGCCAGCTTGTCCCAGTCGCCGGAGTCGTTGAAGCCGAGGAAGAGCCGACCGCCGTCGGTCAGGTGCCGGGGGCCGTCCACGAGGAAGGAGCGGTGGGAGACGTAGCCGGCGTCCATGATGGCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 37708-36946 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMSP01000031.1 Streptomyces cavourensis strain JCM 4298 sequence31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 37707 29 100.0 32 ............................. GTGGCAAGGGACTCCAGGTAGCGTTCCGGGCG 37646 29 100.0 32 ............................. ACGCACCGGAGGTGCTTGGCAGGATGCCGAGA 37585 29 100.0 32 ............................. TTCCCGGGCGTCGCGCACTACATGGGCGACAT 37524 29 100.0 32 ............................. CTTGCTGTCGCACGGGGAGCAGTTCGCCCCGT 37463 29 100.0 32 ............................. GTGACGGCGCTGACGGCGATGCACGCGGAGGC 37402 29 100.0 32 ............................. CCGCTCCCGCCGCAAACTCACCGCAGGCTCCC 37341 29 100.0 32 ............................. CGTGAACGGTGTTCGGTTTGGTCCGTGCAGCA 37280 29 100.0 32 ............................. GACGACAGCGCGGGGAGCCACTGCGTCTGGTG 37219 29 100.0 32 ............................. GGAAAGGGCCCCCACCGAGGTGGGGGCCCAAC 37158 29 100.0 32 ............................. CCCCGGCCACGGTTCCCGATCTCCGCCGTCTG 37097 29 100.0 32 ............................. CAGTCCTTGGCGGCCTCGGGCGACGTCCATTC 37036 29 96.6 32 ............................T GCCTCCAGGGCATACGTAGGAACCGCGCAAGT 36975 29 86.2 0 ..C..................AC.....G | A [36949] ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.7 32 GTGGTCCCCGCGCACGCGGGGGTGTTCCC # Left flank : AGCGGCCATCGACTCCCCCGTGCGCTTCCTCCGCCACCGTCTGACGACCAAGACCCCACCCCAACTCCCCACCAAAAACACCGGATCGGGCACCACCGCCCCCACCGCCTCCAGCCTCCTCGTCGAATGCACGGAGTGCGGCACCCCGGGACCCCCCGAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCGCGAAACCCACAGCAAAGGGCCCGGGGACCCTTCGCCCGCGCCCGCCGCAGCACCGGACATCAAGGCCCGCATGGCCAACCTCCGGAACCTCCTCAGAAGCGTCTGAGGCAGGCGACGGCGGTTCAGCATCGATTGGGCGGCCTCTTATCCGGGAATCGAGCCGCCAGCCTCGGCCAACAGGGGCAGAATCTCCCCAGGCAGGCCCCGAGTCCGGAAACGGCCGTCTGCACGGCGAGGGAGATATGTCCGTTTCTCAAGAAGTAAGTAAAAACGAGCCTCACGCCGCCTAAAACCGCAGGTCACGAACT # Right flank : CCTCCGTGGTCGATCCCCCACCGGGCAGTCGGCGCACAGGAACCCTGCTTGTCCGGGCAGTCCGCGAGGTCCGCTGAGTCCGGGCTACAGCGCCTCGCCGGGAATCGACAGATAGGCCTCGCGGAGGCGGCCCAGCAGCGGGTGCTCGGCGGCGAACCCGGTCCCGTCGATGGCCGCCAGGGGGCGGACGCCGATGCCCGCGTTCGTCGCGAAAGCGGCCACCATCACGCGGGCGTCCTCCAACGTCAGGTCCGCGTCGCGGTGTTGGGCGGGCGGCGTCGGGTGCTCGCGCAGCAGGGCCATGGTGACGCCGGGCAGTACGCCGGATCGTGGCCACAGCACGGTGCCGTCCCGGTCGATGAGGCCCACGTTCCAGGTGGCGCCCTCGGTCACGTACCCGTCGCGGCCCACGAACAGCGCGTCGTCGTAACCGGCGAGCTGCGCCGCGCGCCGGGCGTGCAGGGCGCCGAACAGCCCCGTGTGCTTGACCTGGGAGAGGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8971-9608 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMSP01000007.1 Streptomyces cavourensis strain JCM 4298 sequence07, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 8971 29 100.0 32 ............................. TCGCTGGCCAGCCGCCGCGCGTGCCGTGATGA 9032 29 100.0 32 ............................. GCCACTCGAGCTGGCTGCGTCTTGACCGCTCC 9093 29 100.0 32 ............................. CCTTGATGCAGGCCGGTGTCGACGTCGCGCGT 9154 29 100.0 32 ............................. CCTCCGCGCTCGCCGCCATGATGAGCGGCACG 9215 29 100.0 32 ............................. CTGCGCAGGGCCTCGCGCTGGCAGCTACAGCG 9276 29 100.0 32 ............................. CCGCGATCGAGGCTCGATGTCGATGTTCTTCG 9337 29 100.0 32 ............................. GACACGTCCAGTGACTACCGCTACCACAACCG 9398 29 86.2 32 ...A....T...C....A........... ATCCACTGCACGATCGTGACAGCGGCGGAGCC 9459 29 86.2 33 ........T...C....A..........A ACAGACCGCGCCGACGCGAGGCTGATCGCCTCG 9520 29 89.7 34 ........T...C....A........... GCTCCGCCGCCGCTGCCCTGTCGTTCGGCTACGG 9582 27 79.3 0 --......T..AC.........C...... | ========== ====== ====== ====== ============================= ================================== ================== 11 29 94.7 32 GTGGTCCCCGCGTGAGCGGGGGTGTTCCG # Left flank : CACCGAAGGACGCCTTCGCCCGCGCCCTGCACATGGCGGACCTCTTCGCGGACTCGAAGCAGGACTTCCCGGGGGCCGCCAGGATCATCGACCGGGCGCTGAACCTGAAGGACGAACAGCCGACTCCGCTGCAACGGTTGCGGCTACTGGTGTTGCGTGGGGACCTCGCGCAACGGCTGGGGGACGCGGAGGGGGCACGGGGGTGGCTGGAGGCGGCGGAAACGGTTCAACTCACCGCCGGGGAGGAGGCCTTGGCCCGCGATGCGCTGGCTCGGCTGGAGGAGCTACGGGGGTGATGGAGCAACCGGTCGGCCGATGGGGGCTACCCCTCCAGGCTCGGCGGGGGCGCCCCCTTACGGCTCTCTGCCGAACCAGTCGCCATGTGGACGGCTCACGAACCAACTGCGCCCGGCCGCCCGCTCTGTGATCATGTAGAGGTGAGCACGCAGCTTAAGGGTCAAGGACTGGCAAAGCCCCTATAAACCAGCAGGTCAGGAAGT # Right flank : CGGCGCTGATGCTCCTACCGGCGGCGTCGGCCGAACCGACACCCGAGTGGGTACTGACCCGCCACCAGCATTGGGCGACCGAATCCGCACGGCACGCACTGCCCTGAAGGTGTCGCAGGAGCGCCTGTGCGAACTCAGCGGAGTGGACCGGCAGGCGATCAATCGCATCGAGCTGGGCCGTCACGCCACCGCATCGACACGCTGTACCGCATCGCCCGGACACTGAGGGTCCCGCTGTCCGGCCTCGTACGCGAGTAGGGCATGGCCGCGCGCACGGCCATGCCCCCCCCCTGTGGGCTATGTCCTCCTGGGCTGGATGATCGCGGCCGGGTCCCGGAGCCAGATGTGCTGGCCGCGGTCGGTCACAGTCATGCCGAACTGCTCGGCGTCCGGCAGGCCGGCCGACTCGTACTCCTGCCAGACCTGCTCGATCTCGTCCCACAGGAGACCGGGCCCGTACTGCCATGTTCTCCTCGCCGGTGGCGGCGGTGGCCGCGGCT # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGTGAGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 14450-15265 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMSP01000007.1 Streptomyces cavourensis strain JCM 4298 sequence07, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14450 29 100.0 32 ............................. ATCCTCAGCAAGGCAGATGAGATCGAGACTGC 14511 29 100.0 32 ............................. TCCCGGTGAGCCGCCTTACCTCGGCAACTCAC 14572 29 100.0 32 ............................. ACCGAACTCGCCCGTTTCTTTGTCCAACTCAC 14633 29 100.0 32 ............................. AAAGCGGTCGGGGACGCGGTACTGGAGCGGCA 14694 29 100.0 32 ............................. CCTCATGTCGAAGTACAGCAGCACCCGCGACT 14755 29 100.0 32 ............................. CAGGCGTATGCGGGGCGCCGGTGGAAACTCCA 14816 29 100.0 32 ............................. CCGCAGCACCGTGGACGCAGCAGACCCGGGCC 14877 29 96.6 32 .................A........... CTCACATGCGTCCGCTTAGGCCGATTTGCGAG 14938 29 100.0 32 ............................. TCGTCTCCGATGGGTGCGGAGTCGGGGTCTTC 14999 29 100.0 32 ............................. GTCAGCCAGCCTTCCGTGCAGTGGTCGGCGGC 15060 29 100.0 32 ............................. ATGTCGCGGAGCGCGCGGTCCAGGACGATCTG 15121 29 96.6 31 ..................T.......... GACCCCCCCATGACCGCTCTTCCCGGGCAGC 15181 29 93.1 29 ........................GC... CTGACCCGTGAGGGTGCGCGGCGTGGGTG 15239 27 89.7 0 ........--..................A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.3 32 GTGGTCCCCGCGCGAGCGGGGGTGTTCCG # Left flank : CCAATTTGGGCGCCCAGGAGGAGGATTCCAGAAGCCAGTTCACCGATCGCCTGTGGTGAACCAGCATCCGGGGGCCCGCCGTACCGACCCGTCCTGTCTCCGGGCGCGGCGGGGAAATCGGGCGCTTCGGCGGAGGCGGGGTCTTCGGCGGGTGGTCCGGGGCGTGATCCGACACATTGGCTCCAGGGGCGGCGGGGCGCCCATCGTATGGCCGCTCATCACGGCTCTTGCCCCCGATGAGCCGCCCCTTCACCCGTACAGATGGGGCTCCCCGTACAACTTGACGCGATTTTGCGCCAGGTTTAGCAGGCAGGAGGGGACGCGGGGGACGTAGGCGCATACCTGCACAGCGCCTTGCGGTATGCCAACGCAAGGCGCTGCCCGTGCAGCAAGACGTTCGCCGTCGCTGACTGTTCCAGCTCTGTCACCATGTCAGGGTGAGGACGGCAGGCATGAGTCAAGAATTGGCAAAGCCCCTATAAACCAGCAGGTCAGGAAGA # Right flank : AACTTCGCCACTGCGCTTAAGGAGCGTTCTGTGCCAGCAGGGCTGTTTGATATCGCGGGGGCACGGCGACTTCAGGGAGTCGTGCGTGCGGGACGATCGGGTCGTGCGGGCCCGTACTCTGCAGCTGCGCGTGGAATCGCCAGTAGAGACAAGGAGGGGTGCGGGGAGTGGAGGGTGGGGCACCGTGGTCGACGGCCTTGGTTCGACAACCGCTGTCGGCTCATGCCTTCGTGACGCGCGGGTGGCCTGCGGAGATGCCCGAGAGCAGACGAACGCCACCGGCGTTGTCGGAGACGCTGGCGGCGGTGACCAGCACGGCCAGGAGGAGGTGGAGTGTGTCGACGCCGATGTGACGTTCGCGTCCCGCGATCTTCTGCCAGCGTCCAGGCCCTTTCCTCTGCGTTCTGCTCGTCAGGCTGTCGGGGTGGGTTCGAGCAGTTCCCTACGGGCATCGGCCAGGTCACTCGGGTACGGCCACTGTCGGCGAGGCATGATTTCGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGAGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //