Array 1 247657-244145 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJAVY010000008.1 Yersinia intermedia strain IZSPB_Y93 contig00008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 247656 28 100.0 32 ............................ GCTGATGTGGTGCTCAACAAAACACAGGCCGC 247596 28 100.0 32 ............................ GTACAGACTTCAGCAATCAAATCCATCATGTA 247536 28 100.0 32 ............................ ACGCTGCTGGCCACTCAGATGGCATTAACAGA 247476 28 100.0 32 ............................ AGTGTGCGGCACTGAGGCGTCGGGTGCATTAA 247416 28 100.0 32 ............................ GCTATCAGCAGGAAGAAGAACAGGCCGGTGTA 247356 28 100.0 32 ............................ TCCGCTGGATAATTGAAAAGGGACACAAGAAA 247296 28 100.0 32 ............................ AAAGCCTCGGCAATCAGTGAGCAAGTATTGAG 247236 28 100.0 32 ............................ AACCTAAAAGGCTATGCGCAGGTAGTGAGTAA 247176 28 100.0 32 ............................ AAGCTGAGGGGCTATCGTGGATAATCCATTAC 247116 28 100.0 32 ............................ AGAATATTCCCCCAGATGCACCAGCAAAATGA 247056 28 100.0 32 ............................ TGATGCTCTTTTGAGTTAGCCAATGCATTCCA 246996 28 100.0 33 ............................ TGCATTCCAAGCACAGTATTCATCTGGATCTGT 246935 28 100.0 32 ............................ TCAATCCCGGTCAATTCGCTCATGGCGCTGAT 246875 28 100.0 32 ............................ AGGGTGATTCTTCCATCTTTCGACAAATGCGT 246815 28 100.0 32 ............................ AGACCAGTTAAGGAAATCTGGGGGAGCGGAAA 246755 28 100.0 32 ............................ ATTCGGCTTCTTTGATTACGATATCTTTCGGC 246695 28 100.0 32 ............................ ATGGGGCCACTCAGATAAAAGGGCGTCATTCT 246635 28 100.0 32 ............................ AAGATATCGCGTCATGCCTTCGAGAAAACGGC 246575 28 100.0 32 ............................ GTCCGTGGCTTCAATTATTTCTGCTCTACAAC 246515 28 100.0 32 ............................ ATTCAGCAACGACAAATCCGTAGGTGACCATT 246455 28 100.0 32 ............................ TGTTTGGTCCCTAGCAGCACCCGATGCAGTTC 246395 28 100.0 32 ............................ AAACGTCGAAGGTCCTACCCTGCTGTTTGCTC 246335 28 100.0 32 ............................ AAAAGCCGATCAGTCGGCAATGCTGACACAGT 246275 28 100.0 32 ............................ TGCGCCTCCATCTCAAATATTTTGGATAGAGG 246215 28 100.0 32 ............................ GGTATTTTCGAAAATAAAATATCTGCTGCTTT 246155 28 100.0 32 ............................ TGCGCTATCGCAACCAGTTGTTCGGTCAGGAC 246095 28 100.0 32 ............................ TTGTGGCCACAGTGGATGTTCAGGGTGGGAAA 246035 28 100.0 32 ............................ TTAGCGATCCGCTGCACACCGTTACCACTAAT 245975 28 100.0 32 ............................ TTCACGCTCGAGTTCATCAATCGCAGACGATA 245915 28 100.0 32 ............................ TGTCACATTGTGCCGGGGGTGATTTATTTATG 245855 28 100.0 32 ............................ GTTTTCGCGGCAAAATGGAAACTACCAGTATC 245795 28 100.0 32 ............................ TACACGACCAGGCTGATTGGGATAACTTTCAA 245735 28 100.0 32 ............................ AGATAGTGAAATCCGTTTACTGAGAGTTCCGT 245675 28 100.0 32 ............................ AGTCAGTTCTGCAAAAGCTGTCGCAGAAACAT 245615 28 100.0 33 ............................ CACGAAAAATCCAGTTGCCAATTTTCGGGTAAA 245554 28 100.0 32 ............................ TATTATGCGTTGGCGGCTTTTGCGGCTGCAAT 245494 28 100.0 32 ............................ CGCGTATTTCAGCTCGATGCTGACGATGTGGC 245434 28 100.0 32 ............................ AGCAACACCAGACCGCGGTGTTTACGCACCAG 245374 28 100.0 32 ............................ TTTATCCGCTGTATAATTAGTAATGGTTAAAT 245314 28 100.0 33 ............................ AAGCCCACCCAACAGTGCTATAAGAGACAACTT 245253 28 100.0 32 ............................ AACACAATCAGGCCGTGAATGCAGAAAACGGC 245193 28 100.0 32 ............................ CACATGGAGTATTGAACCTGAGCCATGTACTC 245133 28 100.0 32 ............................ CGAAAACCTTTAGGCACAGTTTTGCGATGCAC 245073 28 100.0 32 ............................ GGCGGACAGTTCACCGCCAGCAGCCAGAATAA 245013 28 100.0 32 ............................ GAGTTAAATCGAATAGTTGGGATAATCAGTGG 244953 28 100.0 32 ............................ GAAAGTCTGATGAGCAGATCGCCGCAGACTGG 244893 28 100.0 32 ............................ AGAAGAGTTTACCAAGACCTACAGCGATCAAG 244833 28 100.0 32 ............................ ATAAGCCGCTTCCGGTGGATAAATCACTGATT 244773 28 100.0 32 ............................ TGACGCCCGTTACTCAGGCGATACCACACGGT 244713 28 96.4 32 ............A............... GACAGTTGTCAGTTATTTACTCTGGGGATTGG 244653 28 100.0 32 ............................ AGCTCACCGCCAACTTTGCCGTCCATCCCTGC 244593 28 100.0 32 ............................ CAACACCACGCGGTAAATCATCCGAAGAAGAT 244533 28 100.0 32 ............................ ACAGGTAATTTCAGTGCAACAGATACTCAAAT 244473 28 100.0 32 ............................ TTTAAACCCGTACAGTATAAAGCCCCCGGATC 244413 28 100.0 32 ............................ ATGATGGTCAATACAGCTTATGCAGAGAGAGG 244353 28 100.0 32 ............................ ATCCAGAAATAAGCTGCGACTAATATCAGAGT 244293 28 100.0 33 ............................ TTCCACTGTTTTTTTATGGTGTTCAACGGCTTG 244232 28 100.0 32 ............................ TGTGCCGCTTCCAGTTGGGCTATCAGTGCAAG 244172 28 92.9 0 .....................G..A... | ========== ====== ====== ====== ============================ ================================= ================== 59 28 99.8 32 GTTCGCTGCCGTGCAGGCAGCTTAGAAA # Left flank : CGCAAGACATCGATAATTTGATGCAGCAAAACTGGTTACAAGGTATGCGTGACTACGTTCGATGCAGTGCGGTATTGCCGGTGCCTGAGGCAGTACAATACCGAACAGTGAGGCGAGTACAGGCAAAAAGCGCCCATAACAAGCGGCAGAGATCGATTGCTAAAGGGTGGCTAACTGAACAGCAGGCGTTTGAACAAATACCCGACACCCAACAGAAATCTCTCAGGTTGCCTTTTATTCAACTGCGTAGCCTTTCGAACGGCAATACGATGCGAATTTATATTCAGCATGGCGAATTGCAGGAACAAGCTCAGTTGGGAAGTTTCTCTGCCTATGGTCTAAGTAGCAGTACCACCATACCCTGGTTTTAACCCTTTTTTTTCGGCTATTGCTAACTGATTGTTTTGTAATGGTGTAATGAGAGGGTGAGAAAAAAGGGTTTCTCAGTCAATATCCTGATTTATGTTTAATAAACAGGGTGATGGCATATTTTTATTACT # Right flank : GCAAACCCTACCTATGGTGGGGACTGACAACGCTATACGTGCTGACGTTAATCGTCCGGTTGTGTTGATGGCGATAAATGATTTTGCATACACGGTATGACTCCTTTTCGCCGGACTGCAGGCATGGCTCATCCGTGCCTTGAGGGCAGATACCGATGCAAGCAGTAGGCGGAAATCGTGGGGAGTGAGTTAATTACTAAAGGCTAACGAGTCACAAGGGACTCTGGGCGGGACTGGGTAATACGCTGCTGCATCCAGGTTTCCACTTCGCTTTTGAACCAGCGAGAGCTACGGCCAAGCTTGATAGGTTTAGGAAAGTCCCCATCTTTAATCAGTTTGTAAAACCACTTATCGGTCATCCCGGTAAACGTGGTGATAAAGGTCATATCGATAAGTGGGTCTTCGACTGAAAACTGACTGGTGTGTGCGGTGTTCATTCTATCTCTCCCTCTGAGTGGTTAATGGCGGGAGAAGACCGGCGTTGTGGAATGGGTAGACGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //