Array 1 424208-425699 **** Predicted by CRISPRDetect 2.4 *** >NZ_ARYV01000056.1 Salmonella enterica subsp. enterica serovar Stanley str. 06-0538 NODE_140_length_645384_cov_48.937447, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 424208 29 100.0 32 ............................. TTAGTCGCACCACCGGAACCTACCTGCGCCTC 424269 29 100.0 32 ............................. TTGTCATGCGGCGCTGCGAGCGTGCGGCCTTT 424330 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCGCACGCCCTTA 424391 29 100.0 32 ............................. GGCTAGCCTACCCTTTAAGGGGTTCCACAACG 424452 29 100.0 32 ............................. GCTGCCAGCACTACTACCCGCCGTCGTTCCGC 424513 29 100.0 32 ............................. CGTTTATGGCCGGTGCAAAATTTGGTGCTAAT 424574 29 100.0 32 ............................. CGCCGCGAGGTGATCGAGATGCTTGAGGGTAT 424635 29 100.0 32 ............................. GTATCTCGAAGAGCGTCAAAAAAGCCGGAATG 424696 29 100.0 32 ............................. GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 424757 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 424818 29 100.0 32 ............................. TCGAGTTCTGGCATGTCAGACTGACGTATCGC 424879 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 424940 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 425001 29 100.0 32 ............................. TCAGCGTAGGTTGTTGACGTCCCCACCAGCCC 425062 29 100.0 32 ............................. CCATTTTTGATCATCTCCTCCAGCCTGCTGAG 425123 29 96.6 32 .............T............... TGGGAACCGTCAAGGCCCGAGGGTGACGGCTG 425184 29 96.6 32 .............T............... GATTGTTCAGATTGGGAATTTGACCAACGCCC 425245 29 96.6 32 .............T............... GTTACTGTATTATCTCTCGCATAGACCCGGCA 425306 29 96.6 32 .............T............... CCTGAGGAGATATTCACCTTCCTGCATTTCAT 425367 29 96.6 32 .............T............... TCTGGTGGCTGCCTCATATTGTTGCGCATCTA 425428 29 96.6 32 .............T............... AAAAAAATGCGATCGGTACTCAACCCGGCCAC 425489 29 100.0 32 ............................. CGCCGGTTTCGGTGGGGGCTGAATCCTGAACC 425550 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 425611 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 425672 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 25 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTAGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 441823-442279 **** Predicted by CRISPRDetect 2.4 *** >NZ_ARYV01000056.1 Salmonella enterica subsp. enterica serovar Stanley str. 06-0538 NODE_140_length_645384_cov_48.937447, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 441823 29 96.6 32 ............................T GTCCCGTACGAGATACTCCAGCGCCTGCCCGC 441884 29 100.0 32 ............................. GAGTAATGGATGCCCTGCCCGGCGATTGGATT 441945 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 442006 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 442067 29 100.0 32 ............................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 442128 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 442189 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 442250 29 93.1 0 A...........T................ | A [442276] ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGAAATGCCGTCATGGCTTGGGCGACCAACACGGAGTCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //