Array 1 132-879 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBZW010000032.1 Pseudomonas aeruginosa strain PA17-21 NODE_32_length_47196_cov_52.040408, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 132 28 100.0 32 ............................ ACCGACTCCCTAGAGTTAACAACTATTTTTCT 192 28 100.0 32 ............................ ACTGTCGTCCAGGACGCCGCAACCTGGCTGTT 252 28 100.0 32 ............................ TTGAGATGATCCGTGAGGGGCTGCTCGCTCAC 312 28 100.0 32 ............................ ATCGTGCCGGATAGCAGTCGTTCGCCTAGGAC 372 28 100.0 32 ............................ CCGGATAGCAGTCGTTCGCCTAGGACGTTGTG 432 28 100.0 32 ............................ AGGCTACGGAACGCCGACCGCTCGGCTCGGCC 492 28 100.0 32 ............................ AGCCGGCTGGCGTTGGTCAGCGTGACCACGCC 552 28 100.0 32 ............................ CGTCCAGAACGTCACACGCTCGCCGTCGATGT 612 28 100.0 32 ............................ AACCGGAGCCTTCGGGCCGCGTTGGGATCCAC 672 28 100.0 32 ............................ TTGACTGCTGGGGCCTGACGCTCATCGCGCGG 732 28 100.0 32 ............................ GCGACCCTGGCCAGGGCGGCGTCGCGCTCTGC 792 28 100.0 32 ............................ TTGAGCACAACCGGCTGAGCCAGCTGGTTGTC 852 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 13 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTGGTAGGCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10141-9394 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBZW010000032.1 Pseudomonas aeruginosa strain PA17-21 NODE_32_length_47196_cov_52.040408, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10140 28 100.0 32 ............................ ACGATGATCAGCTTCCACGGCGGCCGCGGCTT 10080 28 100.0 32 ............................ AACGCGTTGAACCGCTGTCGTCGGTGAACTTC 10020 28 100.0 32 ............................ ATCACGGCCACCCGAAGGCATCGCCGACCCAC 9960 28 100.0 32 ............................ AGGGCGAAATGGATGTCAAAAAAGTATTCGAA 9900 28 100.0 32 ............................ TGCAGAACCAGCGGCAGTTCCGGGGCTTTCGG 9840 28 96.4 32 .........T.................. ACAAAGAGGGCAGCGCAGACGTTTCATCACGC 9780 28 96.4 32 ..............C............. TTGATGCCAACGATGGCCCAACGCTTGTCCCC 9720 28 100.0 32 ............................ TGGCAGTGGTGCGTACGGTGACAACTTGATGA 9660 28 100.0 32 ............................ AGTAGCTCCGGCACGCTGTGCTGAGCCTGGGC 9600 28 100.0 32 ............................ CACGGATGAGAGTTCGGGTGGCAACAATCCGG 9540 28 100.0 32 ............................ ACAACATCAATCGCCTGATGCTGGGGCACTTG 9480 27 92.9 32 .....................A..-... TGTCGCGAAGTTCATAAGCGGGCTTAGGGCGA 9421 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 13 28 97.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCACCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCATGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 113370-112262 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBZW010000018.1 Pseudomonas aeruginosa strain PA17-21 NODE_18_length_113970_cov_61.814870, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 113369 28 100.0 32 ............................ AACTGGCGAGCTGGTCGAGGTCCTGGGTCACC 113309 28 100.0 32 ............................ AGACTTCGGCCTCATGTCCAAGTCGCGTCTCT 113249 28 100.0 32 ............................ TATAAGCTCCCGCAAGTTGTGGACCGTGACAA 113189 28 100.0 32 ............................ CGTTCGACATTCCGCAGGTGGGCAAGGTCATT 113129 28 100.0 32 ............................ TCATACTGGGTGCCGTTCGCCTTCGCGATCGC 113069 28 100.0 32 ............................ TGCCGATCGCGCCGGAAGCGGTGAGCCAGTTC 113009 28 100.0 32 ............................ TCGGTGACGCTGGACTGGTCGAGGGGCGTAGA 112949 28 100.0 32 ............................ ATATCCAACACCGGGACGGGAGTCCGATCCTA 112889 28 100.0 32 ............................ TGGGCCGGCGCCTACGCGGCGCATCAGCCGGT 112829 28 100.0 32 ............................ TCGGACAAAGACAGCCTCCGGTCATAGGGTAG 112769 28 100.0 32 ............................ TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 112709 28 96.4 32 .............T.............. ATACTGACTCAGCCAGGGAAAAGTCACTTGGA 112649 28 96.4 32 .............T.............. AGCGTGCCATGGCGGCGGTAAGTCAAACCGTT 112589 28 96.4 32 .............T.............. TGGTCGAACAGATGGCGGTCCTCGGCCAACTG 112529 28 96.4 32 .............T.............. ACGTCGGAACGCAACTACCTGACCGCGTTGGT 112469 28 96.4 32 .............T.............. CGCAACGTTCGTGATCTGCCGTTCGCCGCCCA 112409 28 96.4 32 .............T.............. TCGGCGAGGCGATCGATCATGCGAATCAGCAA 112349 28 96.4 32 .............T.............. ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 112289 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================ ================== 19 28 98.5 32 GTTCACTGCCGTACAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAGCGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATGTAGTGGTCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //