Array 1 802974-801317 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPQC01000002.1 Vibrio parahaemolyticus strain SK contig.2.cir, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 802973 28 100.0 32 ............................ GTCATCAAAATTTATCGATAAATTAAAAGAGT 802913 28 100.0 32 ............................ TTAGCCTTAGCTTTAGCCTCTTGCTTGGCCTT 802853 28 100.0 33 ............................ GATGAGGAAATGGCTGAGTTAGCTCGAAACCTT 802792 28 100.0 32 ............................ GTCACAAGGGTGATTTCCACTCCTTGCTGATC 802732 28 100.0 33 ............................ ATCCGTCTAACGCTTCATCAAATGGGTGGTATT 802671 28 100.0 32 ............................ TTTTTTATTGGATTGAAGTTATGACATACCCA 802611 28 100.0 32 ............................ TCGTTGCGTGTGCCTGGTGTTTATAAGGTGCA 802551 28 100.0 32 ............................ GTCAAAACGCGATTGTGATGCAAAACCTCGAC 802491 28 100.0 33 ............................ TATGACAGCTCAATGAGTCTAGCTAAGAAGTTT 802430 28 100.0 32 ............................ CGTCAAGGCTGGTACTCAAACAGAAGCGAAAG 802370 28 100.0 33 ............................ ATACCGCAATATTCACATAAACGAAAGAAATCT 802309 28 100.0 32 ............................ TGGCAGCCTGATAAGAATTGGGCTTCTGGTGT 802249 28 100.0 33 ............................ CAAAGAAAACCGAACTAAAGCTAGCTGCTTCGC 802188 28 100.0 32 ............................ TCGGCGTTGACGCCTGCATTGCAGAAGTTGTT 802128 28 100.0 32 ............................ AACTAGCGCGCTACGCTTACTCAAATCAAAAA 802068 28 100.0 33 ............................ TGAGTTTCTGTTAATGAGCAAGAAACCTCCCTT 802007 28 100.0 33 ............................ AATAGATCGTCGCCGCTGAATTGTGCTAGGTCT 801946 28 100.0 32 ............................ AATAAACCCTGCCAGTGAGTCTGAGAGAGGCT 801886 28 100.0 32 ............................ TTTGCCTTGTGGCAAGTGCATTGGTTGTAAAA 801826 28 100.0 32 ............................ TTTGCGCTTCTTCTATGTACCAACTAGGTTTT 801766 28 100.0 32 ............................ TTAGACAGATTGTAAACCTTGTAGAAGTCATC 801706 28 100.0 32 ............................ TGCTGCCAACAGACTGGCTCGTCGTAACCTTG 801646 28 100.0 32 ............................ TACGTAATATATATTGAAAAATGCGGTAAAGC 801586 28 100.0 32 ............................ ATTAACTCACAGCTGCAACACCAATATTTTGA 801526 28 100.0 34 ............................ ATCATCGATTAGCGTTGAGCGCTATGTTGATTCA 801464 28 100.0 32 ............................ TGTCACAGCCACGAGCGCGTCCCTGGTTAACT 801404 28 96.4 32 .............C.............. TGCCCGTTGTTGTAGCGTTGACCATGCATCTA 801344 28 89.3 0 ..........A..C............G. | ========== ====== ====== ====== ============================ ================================== ================== 28 28 99.5 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GAACGATGTGACTTACGTTAGCTTTACTCGGAAACAAGTCAAATCCCCTGAGCGAATTGAACGCGATATGCAGAAAAAAGCGGAGCTTTGGGCGGCTAAATCTGGCAGGTCATTACAAGAGTGTCTTGTGGAGCTGGAAAAGACTAAGCCGACCTCGCTCTGTCCATTACCGTTTATCTATTTACATAGTCAACAAACCAAACAACGTTCACCGGATAAGAGCAGCAAATTTCCGTTGTTTATTGAAATGAAAGCTATCGGAGTAAAACAAGAAGGTTATTTCGACTGCTATGGGCTGAATTCCAAACTTAATCGGCAAGATTGCTTAGGGACTGTTCCGCAATTTTAATCAATAAAGGGTAAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATAGGTATAAAATACAGCTAGTTACAATAGATAGATTTTGACAAGGTAAAAACATGATTTTTATCCTATCTATCTGTTGTAACTTTCTTTTATTGATTTATTCTGTT # Right flank : GGCTGAAACGGTGTCCTCAAGTGTAAGCTTTATTCATATCGAGAGCTTTACGCTAAGTCGTAAAATTTAGATTTTATTCTCATAATATTTAGCCAAATAATTTCCTACATTAAGTTTAATAATAACCTTACTTAAAGGTATTTTTTATTTTCCATGTAGGGTAATAAATTTTTTGAAGTGTTACGAAAACCCATGATTATTCATATTTAATTTGCCAAAATTTAACAAAAAACAAAAGTCAAAAGATATGATTGCTTGGAAATAATCGGTGAATAATGCATAAATTAATATTATGTGTATTATTATTGAAATTAATGATTGAAGTGTATCGTCTCGCGATAAGGAATAAAATAGTGTTGTGTAATGTTTGTAAATTGAATTATGACAAAACTATAAGGCTAGGTAGGATAGCCATTTGTGATGAATGTTTGATTTCTGCAAGTGATTTTTATAAAGAGCATAGTCATGAAAAGTTTGAAATTATATTTCATGCAGATATG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //