Array 1 218466-217764 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHHN01000004.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CVM N45953 N45953_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 218465 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 218403 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 218342 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 218281 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 218220 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 218159 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 218098 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 218037 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 217976 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 217915 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 217854 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 217793 29 96.6 0 ............T................ | A [217766] ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 236156-234725 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHHN01000004.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CVM N45953 N45953_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 236155 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 236094 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 236033 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 235972 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 235911 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 235850 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 235789 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 235728 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 235667 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 235606 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 235545 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 235484 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 235423 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 235362 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 235301 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 235240 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 235179 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 235118 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 235057 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 234996 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 234935 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 234874 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 234813 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 234752 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //