Array 1 1436-1586 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYRG01000054.1 Lactobacillus crispatus strain UMNLC16 crispatus-10-B8S4174, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1436 29 100.0 32 ............................. TGTCCAAACCTTCTACAATTCGTTGTATTTTG 1497 29 100.0 32 ............................. GGCTTATGGCATCAGTCATGGCTTTTGACGTT 1558 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTATTCTCCACGTGTGTGGAGGTGATCCC # Left flank : ATATTTGAATGATAAAAACCTTGAGCAATCTATCTGGATTCTTTTAGATAATTTAAATTTATTAAAATTACTTTTAGTTGCTGAAACTGATTATAGTCATTTTTTTATAAAGTTGCGAAAGTTAAATGAAAAATTTAAAGGTATTTCTAAACCATATCATCATATGTCTAAAAAAACACATACTGTTAATCAAATGAGAAGAGCAATTAATGCTGTGATTGATAATATAGTTGGTGCAAACAATATGAAACTGAAGGATTTGCATGATGATCAGATTATTCAGATATATGTTGAAGCCAGTGCGCTAAATCAAAATTGGTTAAAGCTTACTGGTAACGAGGGGGTAAGGCATCGAAAACGAAAAAAATCAGTCGGAGTTTATTCAATTGAGTTTGGATATTTAGACATTGCTTACATGTGTTGAAAAATGGATCTTCTTAAAAGTAATGAAAAATGTTATGATTTGAATTGAGGATCATTGATATAATGGGATTTGTTTA # Right flank : TCTTCGATTTGTATAAATATAGAAATTTGTCGGTATTCTCCCCGTATGTTGGAAGCATTTTAAACTAAGTGTATAATTTTTTGC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2196-702 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYRG01000025.1 Lactobacillus crispatus strain UMNLC16 crispatus-10-B8S4135, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2195 29 96.6 32 ............................C ATGTAAGTCCTTTGCTAATTCTTCTGCAGGTA 2134 29 96.6 32 ............................C AGTGACACCGCCGCCAAACAATACAAAACTAG 2073 29 100.0 32 ............................. TACGTGAACGCTAGGATCTGTCATTGTTTTTA 2012 29 96.6 32 ............................C TTTCACTCAGTTTCTGCTGCTGATAAATCATA 1951 29 100.0 32 ............................. AAGAAACGTCAACTTTCAGGCGTTGAATCATC 1890 29 96.6 32 ............................C GAGCTGTTGATCAAATTATGCTCAAACATGGT 1829 29 100.0 32 ............................. AACGATGCTTTTTATAAGTCCAAAGAGTGGCG 1768 29 96.6 32 ............................C GTGATTTAAGAGAAACGTTCGAAACCAAGAAA 1707 29 100.0 32 ............................. AAAGTTCGATTGAGATCATCATCAAATTTACC 1646 29 100.0 32 ............................. AAAATAGACGTTAACCTAGTCCCAAACATTTG 1585 29 100.0 32 ............................. GGGAACGTGGTGGATTCGATGCACAACATGCA 1524 29 100.0 32 ............................. ATGACTACGCTTACCGTTCCGACCGTGAAGTT 1463 29 100.0 32 ............................. GTTCTGTCAATCCGTATAAATTAACCCGTCCG 1402 29 100.0 33 ............................. GTTTGTGTTATTGTAGCGGTGTTAATCGCTGCC 1340 29 100.0 32 ............................. AAAGCGACTGTATGAGGTTATGATCTATCTTA 1279 29 100.0 32 ............................. GATGTTCCGCAGAATGGGCAAAAACGAATTTT 1218 29 100.0 32 ............................. CAGTATTTGACAGAATGCAAGAACAAGCTGAA 1157 29 100.0 32 ............................. GACACTGACACTACGGCTGGCGGTTTTGCAGG 1096 29 96.6 32 ............................C CAGCCAAGAATTAGCCGGTATTAACAATATTC 1035 29 100.0 32 ............................. TTATCGTTCTGATGGAAAAGGAGATATTGTTT 974 29 100.0 33 ............................. GAACATATGTTAGGTGTTTGGGACTTTGAAGAA 912 29 100.0 32 ............................. GTAAAAATTTACATGCTGGGTAACACAGTAAA 851 29 96.6 32 ............................C CATCACAAAACATAGTGAAGCAGTTACACCCA 790 29 96.6 32 .............A............... ATCTCTAGTAGCTCCTACAAAAACATCAATAT 729 28 82.8 0 .............A.........-..TGC | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTATTCTCCACGTGTGTGGAGGTGATCCT # Left flank : TTCGTGAACAAATTCTGCGACTGACTTCACAAGAAGTACCACATGCTACTGCTGTCGCAGTTGATCATATGAATACTCATCAAAATGGCAAGCTCTTGATTGAAGCGACTATCTATGTTGAGAAAGACGGTCAAAAAGGCATTATTATTGGTAAGGGCGGTAAGATGCTCAAGCAGATTGGGATTAATTCACGTCAAGAGATTGAAAGATTGCTTGGTGAAAAGGTCAACTTGCGTCTTTGGGTTAAGGTCCAACATAACTGGCGTTCTGACCCTAACTTTTTGAAGCGAATAGGCTATGACAAAAAAGAACTTTAGTTGAATTACTGTTGTATAAGCGTTGTCGAAAGATGACGTCTTTTTTGTATGTTTAGGGAGACAAGAAAATTCTATTCGTTGGATGACTAATGAGACAGAAATAGATACAATAGTAATTGACAAAGTGATGAAATTTTGGGATCTATTGTTTTGTGATTGTTGTTATATTGGGATTTGTTTACT # Right flank : TATATTGGGATTCCTGAAGAAATCATGAATGTAATTATACGAGACCACAAGGAAAAATTTTAAAATCTCAGGCTTCTAAAAAGCAAAAAGAAATTTTTAATAGTTGGCAGGAAAAATGAAAGAAAATATGTAAAGACAACTAAAATAATCAACAGAGCTGCTCTTGGAATATTTATTGTTGCAGTAGTAATTTTTTATTATAGGGTTAGTGAAGTAAAATGACAGTTAGTGAAGCACAAAAAAAGACGACTAAAAAGTGGGATACCAAAAACAAAACTCGAAAACAGTATTTAAATCGGTTACTAAAAATTTTATTTTGAAAGAAGCCACCACAGAGGACCTTGAACAAATTAAAAAGTATTTTGGGCAAAGAAAACACGGAAAAGATTGATTGTGGTAGAAAACGCTGCATGAATAATTGTAATTTTTAGTAAAAAGTTTTGGAGGTACTTTTTAATGATTGATTTAAATAGTTCAGATATTATGGACGCACAAGAAGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 34056-32926 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYRG01000025.1 Lactobacillus crispatus strain UMNLC16 crispatus-10-B8S4135, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 34055 29 96.6 32 ............................C ATGATTTGCTAGTTAAAAACATTGAAAATATG 33994 29 100.0 32 ............................. CTTACCCTGGCGCTGGTATTAGCGATATTGCA 33933 29 96.6 32 ............................C TACACCAGCCGCTATTGATACTAATGACGTTA 33872 29 100.0 32 ............................. TAAGTCAAGCGATCGGAATTATCTGTGCTTGG 33811 29 96.6 32 ............................C GATAATTATATATTTTTTGTTTGTCACGGTGT 33750 29 100.0 32 ............................. AGGCGATTCCGCAATACTTGCGAACCTATCGC 33689 29 100.0 32 ............................. ACACCAAGGATACCAGTTTTGGTAACTTCAGT 33628 29 96.6 32 ............................C ATCACAACATTTTTAAGGAGTTACACCCATTC 33567 29 96.6 32 ............................C ACCGCCAGCATTAAACAAGGTACTCATTTTAG 33506 29 100.0 33 ............................. AAACTTACTGGCGGAGATTTTTATTTTTGGAAA 33444 29 100.0 32 ............................. CACTAGAATCAGATATAACTTTAACTGTATTT 33383 29 100.0 32 ............................. TTTCGCTAGTTTTCTAAATAAGAAGCCCGTTA 33322 29 100.0 32 ............................. GTTCGCAATTGCGAATTGCTGATCGGGCTCTT 33261 29 100.0 34 ............................. TAAAAATCATTCATACATTGTGTGACTGCTGAAA 33198 29 100.0 32 ............................. AGCTTGCTTTGTAGCTTGTAACGTTTTTTCGC 33137 29 100.0 32 ............................. GCACTTGGTCCTTGCGCCTTTAAATTGCGACT 33076 29 96.6 31 ............................C ACAAAATCCAGGTACTACTTTAATCCATGGA 33016 29 89.7 32 ...........AC.....A.......... AACTGATTTAGTGGGTGCAGTTATGGATTGAG 32955 29 75.9 0 ...........AC.....A.TC..T.A.. | T [32938] ========== ====== ====== ====== ============================= ================================== ================== 19 29 97.1 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GATAAACCAACGCTTGAAGTTAATAATGCAGTACCTAACAAAGAAATTATTAATTTACGAAATTCCATTATAAAAACAAACCAGATAAGTTCTGATTTTTATCTCCTCTCTTAATTCACCTAAGCTATTGTAGCTCAGCAGTTTTACGAGAAAGTTACAATTAAATTTCGATTAATAACAAAAAGTTAGTATGAGTATATGTGAATATGCTTTTGATTAGGCTAGTTAAAAGCGGATGATAAAGCAGTGTCATGGATAAAGTGTTTGGGTGAAATTCTTAATTGTGAGCAAGAAAGATTGGCAGACAAATAATATTTTTCTTTATTTGTTTAGGAGGAATCATAGCAGAATGATATTATGATTCCTCTTTTTATTTGAATATTATGTCCAGCAGATATTGTCTATTTAATAAAAATCGATATACTTGGTAGTAGGATCAAAGTGATGAAAAAATGGTGTTTGCGTATTTTCATTTGGCGCTATAAAGGGATTTGTTTACT # Right flank : GTCCTGGAACGTACAGAAAAATAGCTGATAAACCGCGTCACGACGGCATTTGTTAGTGATTGAAAGTGTACTTTTTTCTTTCTGAACGATTGGAATTAGTACACTTTTTCTATTTGAAGCTGGCGGGTCGAGTGTTCTATGTCCTATTTCGATAGTCGAGTAGACGATCGTTCAGTTTGGCAGGTCGTATTGATTATGGTAGTGAAAGTAGGAATAAAGATTGATATAACAGCATTTACAGAGGGCGCAAAAATCAGTCAATTTAGCGTTGAGAGTTGAGTTAACGAGTATGCTATTAAATTTTGACTGTTTCGATTAAAAAATAGAAAATCTGCACAACGGTAGTTTACTCGACGTATAATATTAATATTCCTGAAGATTATTAAGGCGGTAAACAAGATGGCAAATCGACAAATTGAAATAGAAAATAAAGCGATGAAAGAGATTCTTATCGCAATGCATAATTTGGGAGGTCAGGTTACGAGAAAACAAGTACTACA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 37118-36784 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYRG01000025.1 Lactobacillus crispatus strain UMNLC16 crispatus-10-B8S4135, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 37117 28 89.3 33 ............TA.........C.... CAGTTTAGGTACCATTTTTTGACGATCAAAATC 37056 28 100.0 34 ............................ TGACAAGGTTGACCAAGCCGTTAAGACCATGCAA 36994 28 100.0 33 ............................ TTAAAATAATTAAGGAGGGAACTCCAAATATCG 36933 28 100.0 33 ............................ CAATTTCTTCCTTCGACATGTCCTTAAGAGCAT 36872 28 89.3 33 ...........ACA.............. TGACAGCTCTGCTGTAGTGATCGAATCAGACAA 36811 28 71.4 0 ...........ACA........CT.AAT | ========== ====== ====== ====== ============================ ================================== ================== 6 28 91.7 33 GTATTCTCCACGAGTGTGGAGGTGATCC # Left flank : CGGTTTACACCCAACACCAGAAGATGCAAGTAATGATTGTTACTCAGCACCCACAGCATATTATCGATGGAATTCAGAATCGAATGCATCGTGGAATCACTATTTTGCACGATGCTGAAGGTGCATATAGTCATATTGAAAAGACAGTTTTGATTACCATTATTGATCGATATGATATGTATGATATTCGCCAAATCGTGCAAGGAGCAGATCCGTATGCTTTCATGAGTGTTAGTGAAGTTGAAAAAGTATATGGTCGCTTCAAGGAGCAAGAAATCGTTTAATGGATAGCCCTTAAACCTTGATATATAAGGATTTATAAATGAAATTTGAATCCTAGGGGCACTTTGGGAGCAAAACTATTCAAAAAGAAGCAGAAATGCTTCTTTTTTATTTGGAGTGGCTTTTTGTAATTATGGCTTTATTATTGGTCTTTGTTAAAAGTGATTAAAAATGATATTATTTCGATTGAGCGATGCTGATATATTGTGGATCATTTA # Right flank : AGCTGCTCTGAAAAATATTTTCTATAGAGTGACTGTTTTTGTATATTATTTAAAAATATTGTTGATGGTGCACGGAGATTGCGTTCACTTATATAGTGAAAAGATGCTAAGAAATCTAAAATAGAATCGAGATGAATTGGTAATCTGGTAATCGTAAGAAGGACTTAGCTACTAATCGTTGTATTCAATTTTGATAACAAATTAGTTAAAGAGCAAAAAATATGAAGAATTATAAATTTAATAAGTTTATGTAAAAACAGTGTCATTAAGTTAGGCTATTGATTTTGGTGAAAAAACAATTAAAGCATCATTTGGCTTTAGACGGCCAGATTGATGCCTTTTTGGCATATTTTTCTAAATATCATTCGCGTTACACGTAAAAGCGTGTGTTGTATATAGTGAAAGGAGGCTAAGAGAATCGGAGCTAAGAGGTGACAAATATGCCGAAAGCCCAATTGCAAAGTGCAAAAGAAAAAACCACAAATCAAAGTTCACTTCAA # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGAGTGTGGAGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //