Array 1 3376223-3380457 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134374.1 Legionella spiritensis strain NCTC12082 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3376223 28 100.0 32 ............................ TTTGACCGGATATATATTAAATGTACAAATTA 3376283 28 100.0 32 ............................ TCAGTGACACTTGCGGCATCTACTGATTACGA 3376343 28 100.0 32 ............................ GCAAGTTAACTAATAAACACACTCTGTATAAA 3376403 28 100.0 32 ............................ AGCGGAATAGACAATTTATAACGTGTTACAGC 3376463 28 100.0 32 ............................ CTTGACGTACGGTAATGAGACAGCAAAAGGAG 3376523 28 100.0 32 ............................ GGTTGCGCCAGCGACAAGTAAATGTGGCCATT 3376583 28 100.0 32 ............................ ATTATCGTTTACTAAAATTACATTTTCTTTCT 3376643 28 100.0 32 ............................ TTTCAAGTGTTTAGCAGTAATAATCTATCTGT 3376703 28 100.0 32 ............................ TCAAACATTCTGCTATATCGCCGTTCCATTTC 3376763 28 100.0 32 ............................ AATTGCGTGATATTCGTTTATTGACTGTTGAA 3376823 28 100.0 32 ............................ TATGGAAGATACTCTAAATTGCCGCTTATGAT 3376883 28 100.0 32 ............................ AGGTACACGTCAAGGTTATTTTGGAACCACAT 3376943 28 100.0 32 ............................ ACCTACATACGCCCTGAATTTCGTGTTTAATC 3377003 28 100.0 33 ............................ TAGCTATTTGGCTGATATTCATACCTTGTTTAC 3377064 28 100.0 32 ............................ TAGGATAGTAGCTTGCTAACACTAGGGCGTGA 3377124 28 100.0 32 ............................ ATATCAATAAAGACTGCGTCGAAGGCCTAGGA 3377184 28 100.0 32 ............................ CTATGCGCTCGATAGCTTCGGTTTTCGCTACA 3377244 28 100.0 32 ............................ AAACTCGCGAAACTACCCGGACAGATGGCCAA 3377304 28 100.0 32 ............................ TTTTCAATCCACCTTTTTCAAATAATTTATAT 3377364 28 100.0 32 ............................ CATCACGAAAAAAACCACCGTTTCATTGGTCA 3377424 28 100.0 32 ............................ TTGGCATTGTTGTCACTCCTTGACATTCACAA 3377484 28 100.0 32 ............................ AAACATTAAACCCAACGCATATCATCATGAAT 3377544 28 100.0 32 ............................ AAAAAGAATGGTGATTACGAATCATTAGCAAA 3377604 28 100.0 32 ............................ TGGCGGAATCGGATTTGACACTATGAAATATC 3377664 28 100.0 32 ............................ ACTCCCTGTCGCTCCGGCTACAAGTAAATGAG 3377724 28 100.0 33 ............................ CTGGAAGATTTAAAAGCTGATCATGATAATGAA 3377785 28 100.0 32 ............................ TAAAGGTTACGTGGGCGGTAATTTTAGAGGCA 3377845 28 100.0 32 ............................ ATTAGTATGAGCCAAATGTTCAATAATTCCAT 3377905 28 100.0 32 ............................ TTCTAGTTAGGTCTAGTTTAGGTCTGCCACAA 3377965 28 100.0 32 ............................ TCAAGGTGTCTTAAGTCTCTTGCAAGCCTATC 3378025 28 100.0 32 ............................ TTCTAGTGCTTGCTGATAAACAGTCTTCCCTA 3378085 28 100.0 32 ............................ AATGGTCATATAGCTGTTAAAATAAGGCTAGC 3378145 28 100.0 32 ............................ ATGAGTATGCACATATCTATTATGAACATATT 3378205 28 100.0 32 ............................ TTATCAATTATCTTAATGCCCGTGCCTTCGCA 3378265 28 100.0 32 ............................ TTTTTCTCGCCTAGCTGATACTCACGCCAGCC 3378325 28 100.0 32 ............................ ATGAAAAATTATATTGATTCAGTAGCCAGTGG 3378385 28 100.0 32 ............................ AACAGACTTACCACTACCAGTTGCCCCGGCCA 3378445 28 100.0 32 ............................ AAATAAATCTTGTGCTATGTACTCAAAAGTAT 3378505 28 100.0 32 ............................ GTCTGTGGACGTCCTCACCGGGCTTATAAAAG 3378565 28 100.0 33 ............................ ATTGGTTATTGTTATTGAAACGTGCTGTGGGAA 3378626 28 100.0 32 ............................ ATAAAAAGGTGCTCCTAGAAGTATCTCTGTTT 3378686 28 100.0 32 ............................ TTTCGTAAGTCCTTTACGTTCAGCGCGAGTTA 3378746 28 100.0 32 ............................ ATACACACCTTGCAATAGCTCAAAGGTTGCGT 3378806 28 100.0 32 ............................ TCTATTCCTCAGTTTGTTTCTTCTGCTTTAGA 3378866 28 100.0 32 ............................ TGTGATATCTTATTGAATCTTAAAGCATATTC 3378926 28 100.0 32 ............................ GATTTAAGGGACGCCATTGATTTTTACAATAA 3378986 28 100.0 33 ............................ CTTTGCCATAGATATGAAAATCGTGCTCCGGTA 3379047 28 100.0 32 ............................ TGGGAAGAGCGCGAGTATCTGGAAGAATTAAA 3379107 28 100.0 32 ............................ AGTAACAGCAGGAGCACCAGTGACGTTAGGAA 3379167 28 100.0 32 ............................ TACGCCATTCTATATACATTGATTGGCCTAGG 3379227 28 100.0 32 ............................ AAGGCCAAGGCCAAGGTGGGTCGTCCTCTTGA 3379287 28 100.0 32 ............................ AGGAATTGTTATTATCTGATTATCAGAGGAGT 3379347 28 100.0 32 ............................ TTGTGCCTTGTGGGTACGTGAAAACGTGTCTA 3379407 28 100.0 32 ............................ AATAATATAATATAATGCGCTATCACTGAATT 3379467 28 100.0 32 ............................ CGTTCATACTTTCCCTCAAGCTCTAGTATCTT 3379527 28 100.0 32 ............................ TGTAGTCGGTCATATATCTGGTCAAGGATATT 3379587 28 100.0 32 ............................ TTCGTTGCGCCTGATAGCTTATCAATATAACG 3379647 28 100.0 32 ............................ GCAGCGGTAAATAAAAATGGTTGGGCATTAAA 3379707 28 100.0 32 ............................ ATGGGAATGAATCAGCGAGCAGTTCAAGAACA 3379767 28 100.0 32 ............................ CTCACGAAGCACTATAAGCGCGAACTGAACGT 3379827 28 100.0 31 ............................ TTTCCATGACAACGTATTGCATTGCCTCATG 3379886 28 100.0 32 ............................ GTCAATCGGTGTGTTGAATCCGCAAACTGAAT 3379946 28 100.0 32 ............................ ATTATCAGATACATTCACGCTTAATGATGCTT 3380006 28 100.0 32 ............................ ATTTCGCGACGTTGAAGAAGAATGTCTGGACA 3380066 28 100.0 32 ............................ TGCGTCAACCAGTCGCGCGCTGTCCACCACAT A [3380087] 3380127 28 96.4 32 .......................T.... ATCAATGGAATTGACTTTTACGTTTTTGATAA 3380187 28 100.0 32 ............................ ATTTGACTCTGAATTCTTTTGTTCGCTCGTAT 3380247 28 100.0 32 ............................ TTATGTCGCTGAACATTATAATAATCCTAGGT 3380307 28 96.4 32 .............T.............. GCAGCGGTAAAGCAATATGGATGGGCATTAGT 3380367 28 100.0 32 ............................ TGGTTATTTTATAATGAATATGCTTAAAAGCG 3380427 28 89.3 0 .C........A...........C..... | TT,A [3380447,3380451] ========== ====== ====== ====== ============================ ================================= ================== 71 28 99.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TCAAAACTGAGGCGGCTAATTAAACGTAGTTCTATAATGGAAGATGAAATTAAGCAATACAAAGCAAAAATGTTTTCCAAAGTTCTGGATAATCCTTATGTTGAACTGGTGAGTGGATCAAATGCTCAAAAACACAGGCGTTATATAGAGTTTGGCGAGCTGGTCGATCAGCCAATTCCCGGCGAGTTTGATCAGTTTGGCCTTTCTAAAACCGCCACTGTTCCTTGGTTTGATTAAATAAGAGAATATGGAAAACCCGTTGAATTAGGTAGGTTCAAGAAAAAGTTTTTAGTTAGGCCCAACATTTTAGTCCTTTCTGTGAATGATATGAAAAATAATCCAAGCTTGGCTATTTTAGACCTTCTAACTACCATTAATTTTGGCTCTTTAAAAATTTGATTTAAAATCAAATAGTTACAAGGTGGCTGGAAAACATTGGGTAAATTGATGTTTTACAGCTAAGTTTTTGTTGTAACTATTTTTTTATAATTTATATTAGT # Right flank : AAGGTAATACGTACACTGAATTAATTGATGAGTCAAGACAGTCCTCCAAAGAATCTTGCACAAGCCACAAAGCGTATCAGTCAGGCTAGTAAAATTGAAAATTATTAATGCCCAATCAGCATGATGAAATATTGAAATAAATCGCGGGCTTTCTCAGGCCCTAAGAATTCTTTTCCAGCCAATACTTGGCTAACCCTCAACGGATTGAATTCCAGTATTTGAGCCAGTTCCTTACAGTCCAATTCACCGTAAGACAGAATATAATCAATTAAAAATTTCTGAGCATCCTTTCTCAATTGAAATTTAACATTAATAACAGGTTCTGAAACCTCGGTAAAACATCCCATGTAACAACCTCATTTTCATATTATTACGGCATAGTTCAGTCGAGAAACAGTAAACCATAACCGTAATTTCGATAAAATTAGTTTTTTTACATGGAAAAAATCATAGGTAAAATGCAATTTTGAGCCATTTGTTATCGATTGTTATTGTTTGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //