Array 1 466491-469060 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMGH01000001.1 Rhodanobacter sp. Root561 contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 466491 32 100.0 36 ................................ GGTAAACGCGTCCGCTATAGACGTGAATTTCCTTGT 466559 32 100.0 35 ................................ GCCCCGATAGACCCATGGGTGACCGGATAGATGCC 466626 32 100.0 34 ................................ GACTACGCGCCGGCGGAGCTGGGCTGGTATGAAC 466692 32 100.0 35 ................................ TACGCCGTGCCGATCGAGCTGGCCGACTTCCCCGG 466759 32 100.0 35 ................................ ACCCGCGCGAACAAAGGCGCAGTTCGACGCGCGGC 466826 32 100.0 34 ................................ TCTTGCCGTAGCGGATCGCCAGCAATACGGCCTC 466892 32 100.0 37 ................................ GGTAGCAATGGCGAGGATCAGGATGGCAGAAAATGGG 466961 32 100.0 34 ................................ TTCCGCGAGGGTCAGCGATCCATCGGGACGACGA 467027 32 100.0 35 ................................ TGCATATATGAGCCGGAACGGACAATAACGCTGGT 467094 32 100.0 34 ................................ CGTGCATCACCAAGGTGCCGTGAGCCAGAAGGTC 467160 32 100.0 35 ................................ ACGTACTCAAGCGCGCCGCCGTCCATGCGTCCCGG 467227 32 100.0 33 ................................ TCCCACTTGTCGAGCAGGTAGCCGGCGCGGCCG 467292 32 100.0 34 ................................ GTGTAGTTGTTGATCTTGCTCGACCACAGGGTCT 467358 32 100.0 36 ................................ GGCAAGAAACCCACCCTGCCGGCCAGCGCGCCCACG 467426 32 100.0 35 ................................ CGTGCTCGAGCTGTACGGCCGTGACGCGCCTAATC 467493 32 100.0 34 ................................ GCTGACGAGGTGACCGACGAGGACCGCGCCGGCC 467559 32 100.0 34 ................................ CGCCTTGCCTGGAACATGCCAATGGATGGTGGTG 467625 32 100.0 35 ................................ ACCAACTGGGTGTTGTTGCGATCGTCGGCATACGG 467692 32 100.0 35 ................................ ACCGCGAAGTCGAACGTGGCGTAGTCCACGCCCGC 467759 32 100.0 35 ................................ AGGCAACGATACGCCAGCTGGTGCGGGAACCGGTG 467826 32 100.0 35 ................................ GGCCTGATGCCAGTCAGGCAGGATGCCCTGCACGC 467893 32 100.0 35 ................................ ATCTAAATGCCCTAACCCAAGCAGCATAATAGGGA 467960 32 100.0 34 ................................ TCCCTCACGTACCCGCCCGAGGTGGTCCGCATGG 468026 32 100.0 35 ................................ ACCGGCGCCGGGAAGTTGCCGGCTTTGATTTCGGC 468093 32 100.0 34 ................................ CTCCCACCGCTGCTGGTGCAGGTCCTGGCAGGCG 468159 32 100.0 34 ................................ CGGCGCGTAGGCAGCCCACAGGTGATAGCTGCGG 468225 32 100.0 34 ................................ AACGCCAAGGGTGTACCAGCCGAACTGATCACTG 468291 32 100.0 36 ................................ TTGACCGAATCCGTCCAGGCTCGCGAATCGTGGAAA 468359 32 100.0 36 ................................ GTGACGCGTGTGATCGATCTGCTGCTGGACCGCCAG 468427 32 100.0 35 ................................ GACATGACCCTACCCGAAATCATGGCAGCCAACCG 468494 32 100.0 35 ................................ GGGACGAGTGTTGGCAATCTGGAAATCGACGGATT 468561 32 100.0 36 ................................ CCAGCTCGGGCTCGAAGGGCAGGCAGCCGCCGCCCT 468629 32 100.0 35 ................................ CAGGCTGATCGTCGCGGTGCCAGTGCCGGCCGTGG 468696 32 100.0 35 ................................ CCCTAAACTCACCCGCACTTGCCCGTCATCGTGGG 468763 32 100.0 34 ................................ TACACGCGCGATCGTGGCGTGGCATTGTCGCCGG 468829 32 100.0 34 ................................ ATCCACCGGAGAGAGACCATGAACAAAGCCGCCG 468895 32 100.0 35 ................................ TTGTCGAAGTCCTCGCAGGAGGATGCTAGCCAGCG 468962 32 100.0 35 ................................ CTCCCAGCGCAGCGTGACCTCGCGCTTGCCGGCGG 469029 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 39 32 100.0 35 GTCGCGCCCCACGTGGGCGCGTGGATTGAAAC # Left flank : ACCGTTCCTGTGGAAGTGAGGTGACACCATGCTTGTTCTTGTCACCTACGATGTCATGATCACAAGCCCGGGCGGCGCAAAACGTCTGCGGCGCATCGCCAAGGCATGTCGAGACTACGGTCAGCGTGTCCAGTTCTCGGTATTCGAGCTGGAAGTGGACACGGCCCGCTGGGTCGAGATCAAGCAACGACTTATCGACCTCATCGAGCCAGACCTGGACAGCCTTCGCTTCTACTACCTTGGTCTTAAATGGCAAGGCAAGGTAGAACACATCGGCGCAAAGCCCGTGCTGGATCTCAATGCGCCGTTGGTTCTGTAGCCACCGCGAACCCCAAGCGGAAGGCAAATCATCGGAAGGTTCGCGGGCAGCGTAACGGCTTGATCACGTAGCAAAGACGTGCGCACACGGGCCGTGCGATCTCGCGTCTTGCCTTCGGTCCGTGGCTTTTCGCTAAATCGATCCTTTTGGAGGCAGCCAAACAGGCGGTTAGACTTGGATG # Right flank : CACCGAGTTCGGCGTCTAGCAGGTCGGCAGTCAATGGGTGGCGAGCCAACTGGATGTACGGGAGGGATGCGCTGGCCAACTTATTTGTCCCATTGCAATACCGATCGGTGCTAGTGATGATCAGTGAGATGGATCTGGTCATCCGGTGAACTCCAGGAGTCGAGGTAGTGACGGCAGTGACGGCAGCAGGTGGCGAAATTCGCGAGGTGGAGGGGGAGCGGCAAACCACCGGGCTGCTGATCTATCGGGCGAGTCGGCTGGAGAAGCTGCTCGATCCGCTGGTGCAGTTGCTGGCGGTCACCCAGCCGGACAACGTGCTGGCGCCGCAGACCATCATCGCGGCGCATCCGGGCATGCGGCACTGGTTGAACGGGGCGCTGGCGCGCAAGTACGGCGCGGGCGGGATCGCCGCGAATCTCGACATCCTGCTGCCCAGTCCGTGGATCGATCGACTGGCGCGGCAGCAGCTGGGCCAGCGTGCGGTGTCGTTGCCGCGCTAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGTGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 499015-503981 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMGH01000001.1 Rhodanobacter sp. Root561 contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 499015 28 100.0 33 ............................ TATCTGCGCTCACTTGTGGAGCGATCCGGTTTG 499076 28 100.0 33 ............................ TAGAGCGCCCGCAGGCTGCTCGGCGGCGGCACC 499137 28 100.0 33 ............................ CGTGTCGCCAGCCTTCAGTGGGCCCACCCGCTC 499198 28 100.0 33 ............................ TCCAGCGGTGCCATCTACCGCAGCCTGTACCGC 499259 28 100.0 33 ............................ CTTCCATCACCACCTTCGGCCTGGCCGCGATTT 499320 28 100.0 33 ............................ CGTCTTGCTCGACATAGCGGTCATGCTTGTCTC 499381 28 100.0 33 ............................ CGATTCGACGAGCCATTTCTTGCGTGATAAACG 499442 28 100.0 33 ............................ TGCAGATCAAGGGGCCGACCGCATCGGTTACTG 499503 28 100.0 33 ............................ TCTCCTTGCCGTCGATATCCACTTCAATGCAGG 499564 28 100.0 33 ............................ TAGACGCGTCGCCGGAGACCCGCGCGTCGCCGG 499625 28 100.0 33 ............................ TTCATGTATCTCGCTACGGCTCCGGTTTACGCG 499686 28 100.0 33 ............................ CGTGCAGTTTTGCGCTCATGCCTCCCCCGTCCG 499747 28 100.0 33 ............................ TGGCGTTCCGCTGGATCAGATCTTCGATCCCTA 499808 28 100.0 33 ............................ TGGCCGTCCTGCCCGGTTCGGCGTGAAAGGGAT 499869 28 100.0 33 ............................ TGGGTGGCAGTGGCCTTTCGGCGTCCGGCTAGC 499930 28 100.0 33 ............................ CTTTGCAGAGATTCCGGAAGGCGCTTCCAGCAG 499991 28 100.0 33 ............................ CGACTGACGCGCCGATGCTAATAATCGACATAC 500052 28 100.0 33 ............................ TGGCTTCGGACAGCGCTTTCCCGTCGGGGTGCG 500113 28 100.0 33 ............................ TTGCCAAGTGACTGCGCCATCGCTTGCGGTGCC 500174 28 100.0 33 ............................ CTAACGCGCGCTGGTTCCACCGCGCGCTTGAGC 500235 28 100.0 33 ............................ CCGGTACTGGGCGACGCGCGTCATCAAGCTCAA 500296 28 100.0 33 ............................ TTTTCACGGCACGCTCGCGCTCTTCGCGCTCCC 500357 28 100.0 33 ............................ TTGGTCCATGCCATCTCGCACTCGGAGAAGCTG 500418 28 100.0 33 ............................ CCACGCGGGCGCCGTGCTCGTCGGGCTCGTGCT 500479 28 100.0 33 ............................ TGGGCCAGGACGGTCGTGTCGCCGCCTCCTGTG 500540 28 100.0 33 ............................ CCTTTACGCCGTGATACGCGCACCATTCGGTGG 500601 28 100.0 33 ............................ CGGATTCGCGCGCATTCTGGCTAGCGCGCCTGG 500662 28 100.0 33 ............................ TACCTGTGCGGCGCGTACTTCGGCTGGAAGGAT 500723 28 100.0 33 ............................ CAGGCTGACCGACGATCGCGGCCAGGAAGTGCG 500784 28 100.0 33 ............................ TGGCCACGTCATCACTCGTCGCTGGTCGAGCGG 500845 28 100.0 33 ............................ TGCGCGAAGCTGTTTTGCATGACCTGTACGCGG 500906 28 100.0 33 ............................ CTTCGACTCAACATGCCCAATCCCCCTCCTTAA 500967 28 100.0 33 ............................ TCGCCGCATGACCGTGCGTGACCTGATCACTCC 501028 28 100.0 33 ............................ TGCGTGGGTCTCCGGCAACGCGTGGGTCTACGG 501089 28 100.0 33 ............................ TGCGCGACTCGGTCGGGCGCAGCCGGCCACCTG 501150 28 100.0 33 ............................ CTCACCTTCGATCCACTTGTGCGCACCTGAGCC 501211 28 100.0 33 ............................ CGTCTGCCGGCGCTTGACCGCGTGCCGAAGCAT 501272 28 100.0 33 ............................ CCGTTCAGTTCGCCGAGGCGGCCGTATCGTTCG 501333 28 100.0 33 ............................ TCTGACGATGAGCGCCGCGCGGTTTGCGCCGAG 501394 28 100.0 33 ............................ CACTTGACGCGCTGGCCCCGCTGTCCTTGAGCG 501455 28 100.0 33 ............................ CTATACGAGGCGACGCGCGGGCCAATTTGCCAC 501516 28 100.0 33 ............................ CCGAAGCCACAGGAGCCACGCCATGACCAACCC 501577 28 100.0 33 ............................ CCACTCGTTGTATCCGCTCCACGCGGCGGCGAT 501638 28 100.0 33 ............................ CAGATGGACAGCGCCTACATCGAGCCGCGCAAG 501699 28 100.0 33 ............................ TTAAAGAAGGTCGCCCTTTGTCATGCGGCGAGT 501760 28 100.0 33 ............................ TCGGTGTCGCCGTTCATTTGTTGCCTCCTTGGA 501821 28 100.0 33 ............................ CGTGTTCATCCGCTGCACCTGGCAGCGCCAGAG 501882 28 100.0 33 ............................ TGGCGCCGCGAATACCGCGAAGCGCGCAAGGTT 501943 28 100.0 33 ............................ TGATCGAAGCATAAGAACGCAACTCACCACGCA 502004 28 100.0 33 ............................ CGTGCCGGCCTGCGTCACGCTGCTGGCGGTAAG 502065 28 100.0 33 ............................ CGCCCGCAAGGTCGACGCCATCGACACCGACGA 502126 28 100.0 33 ............................ CGCACGATAGTCCGGCAGGATTGCCTTCAGCGG 502187 28 100.0 33 ............................ TCAACACTTAGGGTCATGGCGGCAGGCTTGAAA 502248 28 100.0 33 ............................ CACCTCGCCGGCGTTCCCGGTTTCAGCACACGG 502309 28 100.0 33 ............................ CACCGCTGTCTGTAGCCCGTGTTCGAGCATGTT 502370 28 100.0 33 ............................ CGACGCGAAGCAGCTGGCGCAGAACATCGCGGA 502431 28 100.0 33 ............................ GAGCGCATCCGCTGCGACGTGAAGCTGAATCTG 502492 28 100.0 33 ............................ CCAGTGCTTCTTGCCCGTGGCGATCATCTTGGG 502553 28 100.0 33 ............................ TGCGGCGCTCAGCTCGTTAAGCGCACGCGTCTT 502614 28 100.0 33 ............................ CCTGGCATCGCTGGCGGAGATGGGCGTGGACCG 502675 28 100.0 33 ............................ TGCATAAGCGTCGGCTTGGTTCGCGAGTACGAA 502736 28 100.0 33 ............................ TAGTTGGCCGTGTCGATGCGAACGCCGGAGCCG 502797 28 100.0 33 ............................ CGAGGCGCGCGGGCGAGCTGGCACCGGTGGCTT 502858 28 100.0 33 ............................ TCGCCTGCTCCTGCGCCAGGTTCAGCTGGAAGC 502919 28 100.0 33 ............................ TTTCCCCAGCAGCGGCGGCATCGACTTCCCGGC 502980 28 100.0 33 ............................ TTTTGTTGAGGCTCAAGGAGAGGCTGGGAGTGC 503041 28 100.0 33 ............................ CATCGGCCCGGATGGCAGCAGCGCCGACGCCAG 503102 28 100.0 33 ............................ CGGCGTGGCCAGGATCAAGCCCCGGACAAGCAC 503163 28 100.0 33 ............................ CGTGATCTGCGACGGCTGGTCGGTGATCACCAC 503224 28 100.0 33 ............................ TGGACCGTCGGCGCGCGGCCGGAGATCGCGCTG 503285 28 100.0 33 ............................ CCTCTACGACGTGAAGCTGGCCCGCGCCTACGC 503346 28 100.0 33 ............................ TGCGACCAGGCCGGTCACCGTGTCGGCCGACAG 503407 28 100.0 33 ............................ CAAGATCATTTGCGTCATCGATGAGGCTGGCGG 503468 28 100.0 33 ............................ CATGCCGCGGTCGGGATCGCCGGCGTGCAGGTT 503529 28 100.0 33 ............................ CACCGAGCCCGATGATGGCTGGGACTTCCGCGG 503590 28 92.9 33 ........T...T............... TTCACCGGGCAGCGGGCGTTCTTCGAGCCGCCG 503651 28 100.0 33 ............................ CACGTCGCGCGGATACGTGACGTTGTTGAGAGA 503712 28 92.9 33 .........T........A......... TTTCTCGGGGATGTATTCCGTTCCGGTCCCTTG 503773 28 96.4 33 ...................A........ CATCACGCCCGAGCAGCGCTTCGGGCTTCACGA 503834 26 89.3 33 ..A..............--......... CGCCAGGTACTCCAAGACGGCGCGACCAAGCAC 503893 28 92.9 33 .....T...............C...... CGAGTTGATCGCCATGGTGAGCGAGGTGGTGTC 503954 28 67.9 0 ......T.......T.CAT.....CCAT | ========== ====== ====== ====== ============================ ================================= ================== 82 28 99.2 33 GTCTTCCCCACACGCGTGGGGGTGTTTC # Left flank : GTACAAGGCCGAGCTTTGCATCGATTTGGCGTTCCATCTGACCCGCGAGTTGGCTGGCCGCTATGACAAGCACAAGGTGGCTGCTGCCTTCCGCAAGCGCGTGATCGAGATGGATCTTTTGGCGAAGTATGGCGAAGATATCGCAGCCATGCTGGGAGCCACGCGTGCTGATCGTCGTCGCTAATGACCTGCCGCCCGCCGTGCGCGGACGCATGAAGCTGTGGTTCGTGGAGCCGCGCGCCAACGTGTTCGTCTCGGGCATCAAGGACTCGGTGGCCGATACGGTCGTCGCCTGGCTCTACAAGCATTGCCCGTCTGAATCCGGCTTGCTTCTGGTTCGCTCGATCAATCGACCGCCGGGCTTCGAAATGCGCTGCATCGGCCCGCCACGCAAGGCCATGATTGACGTTTCGGGCCTGCAGCTAATCGTCGAAACCCTGAAACCCGCGGTTTCCACAACATCTCGTGTAGACGAGCGACAGCGCTGACGATATGTTGGT # Right flank : TCCTTCAATCGGGTTGGATTGCTCGGCGGATTACATGGTCATGCCGGCCGATCGATACCTCCTCAACTGCGCGCTCACTTTCCGGCGGCCTTCTGCGCCAGCCCCTTGGCCAGGGCTTCGTCCAGCAACTGGCTCATCGACTGATCGGCCGCCTGCTGCGCCTGCTGTTGCTGGCGGTCGATTGCCTCTTGTTGCTTCTCGAAGCCGGCCTGTTGGGCTTCGAGCGCCTGTTGCTGGGCGGCCAGGCGTGCTTCCAGTTCGGCGTGGCGTTGGTCGAGTCGCGCCTGCGCCGCGTCCATTTCGTCCTGCCGTGCATCGAGTTTGCGCTGCTGCGCCTGTGAATCCGCTCCGTTCGCAGCGACCGAGGCGATGCGCGCCGCCATCTTCGCCTGTTGCCGCGCCAGCCCGGCCTGTTCCCGTGCGAAGGCGGCATCCTGCGCAGCAAGCCCGGCCTGCCGGCCGGCGATCGCGCCCTGCTGGCCGGCGAGCTCGCCCTGTTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //