Array 1 955-1227 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAACCG010000058.1 Corynebacterium macginleyi strain 170718 HBRU100_58, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 955 29 96.6 32 ............................C CTCAAGGAACTGTTGGACGAAATGTATTCGGA 1016 29 96.6 32 ............................C GTTGCCACGGAGTCTATCGGCGTGGGCTCTGA 1077 29 100.0 32 ............................. GTGAGGGTGTATGGCGAATTTATGCCCCACAT 1138 29 100.0 32 ............................. TCCGCGATGACGTATACGGGAACGCCGACATC 1199 29 86.2 0 .......................A.AT.A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.9 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCG # Left flank : GCGAACTTGAAGTCATCGCTTCCGGTCTTAACTGGGCAGAAGAGGACACGCTGTCATGATGGTGCTGGTTGTTACTGCTTGTCCCGCTGGGCTACGGGGCGATCTGTCGAAGTGGCTCATTGAGCTGACCCCCGGTGTATTCGTCGGACGTCCTTCTGCTCGTATTCGTGATTTGCTCTGGGAGCGTACAACCGAGCTTTGTAAAGATGGGCGTGCACTTATGGTGCATTCAGCTGCGAATGAGCAGAGAATGGAGTTCAAAACTCACCGACATCATTGGGAACCCACGGATTTCGACGGGATTACCTTGATGAGGCGGCCGGCTAAGTCTAAGCAAGCACCGCGAAGGACTGGGTGGTCTCAAGCCCGACGTAACCGTAATTCTTATAAGAAACAGAAGGGCAGGTAGTAGGCCGCGCGGAGCTTCGGCAGTAGCTTCCTTAAATTACAAGTTGTACGTAGAATTGACCTAAGGCTCGAATTTCTGCTGTTCAGCAAGA # Right flank : ACCTTGTTTTGGTAGCCCGAATCTACTGCTGGGCTTAGTAATCAAGATATCGGAAGGCCATCCAGCAAACAGGTTCGTCGCTTGACTGATGAGAACGGTATTCATTCCTGCTGATGCTCCACCGTCGGCTGCAGCCGCAGCATTGAACGCCATGTTCGACTGATACTGTCCTATGCCTGTGACACTTGGCTCAAGTAGAAAACCGTGCGACGCAACTTCATCGATGTGAATTTTGGTTCGCGTTTGAGCTAAGCCGAATTGTTCCGGCGGCTCCGTTCGAAGTGAAAAGGCGTGACTAACCAGCAAGAGTTGTTTCTCGTAGGACCGAGAATTGGTCTTTCGCGAGCAATTGACTAGTCTTTTGAGAGCGGGATGTCGTAATCTACGACATGAATCCCGCGTGGGGCTATAGCTCAGTCGGTTAGAGCTCCGGACTCATAATCCGTCGGTCCCGGGTTCGAGCCCCGGTGGCCCCACGGTAGAAGGAGGCGTCGGCAAGC # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 40774-40034 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAACCG010000022.1 Corynebacterium macginleyi strain 170718 HBRU100_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 40773 36 83.3 28 A.A.AAT..T.......................... ACACCCACCTCCGCAAGCATCACAAGTC 40709 36 100.0 28 .................................... TCCACATCCCAGTTGATGGTACCGGCGG 40645 36 100.0 28 .................................... AAAACGCACAACAACAGCTCACCCAACA 40581 36 100.0 28 .................................... ACAAGACGACGCGGTAATTGCAGCAGAC 40517 36 100.0 28 .................................... CGATTAACGCCCTGAACTTGATGGATGT 40453 36 100.0 28 .................................... TAAAAAGTCGAGTCCAGGAAGCCCCGCG 40389 36 100.0 28 .................................... GAGCGCATCGACCACGGCGGCAAAGACA 40325 36 100.0 28 .................................... ATTGCAAAGGACGGTGGCGAGCTTGTGG 40261 36 100.0 28 .................................... AATCTGGCTAATCCAATCCAGGTTCGAC 40197 36 100.0 28 .................................... CCGCTGGGAGTGGGGTGCGAAGGTGTGG 40133 36 100.0 28 .................................... ATGTATGCCCAGCACATAGCCGAGTACA 40069 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 12 36 98.6 28 GCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTC # Left flank : CATCGACCCGCTTGCGTAGCTCTGCTACCGGAAGCGTGGCCACGAACTTAATCTCCGAGCGGGAGTAGCGGTCCTGGCGCGCGCCCGCGGCCTGGGCGAGGTCGTGGTAGATGCGGCGGGTGCGCAGGAGGCCATCACGAAGCGCAAGTGCCTGCATCAAGTTCTTCTCACCATCAAATTCGGTGGCCACGTTCGTGGCATTAATGGCCTGCACCAGCTTATCGATGCGCCCGGTAATACCCTCTAGCTCGCGCAAAAGCTCGGCTGGGTCCTCATCCGGGGTATCGCCCTCCTGCACGCGGACTACGGAGAGCAGGCGATCACGCAGCTCATTGAGCCGATCCTGCGCCTGCGCGCGCTCTGCTAATGCCTCTGCTAATAGCATGGTTCCTCCTTCAGGATAGTTAAGGACCACAGTAGCCGGGGTGGAGAGCTGGGGTCAATGGTTTCTGAGATACCAGTTGTAATACCGCGGGCGCATAGTTTCGTAAGATCTGGCA # Right flank : AGTGCGGCCCGAAAAGGGACGTTTAACTGGAGTTTATTGTCGATCCTGCCTTAAAAAATTACGAGTTGGGACGGTTTTTTCTCTACTTCTAGGGGTTCTGCCTTAGAAAATCTTATGGCCTTTGCCCACTGATTATCAGTGACGGAAATTATCCTGATGTCGCCACCTTCAGGGAGGGTAGTCTTGATTTGTTTGACGGTCGAGGCAATCCTAGAAGACAGTGGGAAGTATTGGACATAAACGCTTAGTTGGGATCTACAGAATCCGAGGTCTAAGAGATGGTTTCGGAATTTGTTTGCCTCACTGGTTTGTTTCTTAGACTTAACGGGCAGATCGAACATCACCACACACCACATTGGTTCACTATCCTTCGCTGGCATCAAGGATTCCTTCCCATCGGGGCACGCTTAAGTCACGAATTGCTCCCTCGACGTAGAGACCATAGTGCTGGCCAAATTCATTAAATACAGTGCTTAATGATTTTCCACCAGCTTCGAAGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.70,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //