Array 1 574600-575342 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHUV01000001.1 Pseudomonas piscis strain MC042 Scaffold1_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================= ================== 574600 28 100.0 32 ............................ ATCTCAGAGTCAGTTGCCCCGAGTGCGCACAG 574660 28 100.0 32 ............................ TTCAGCAGCGAATGGATAGAGTTTCGAATGCT 574720 28 100.0 32 ............................ AGGACAATGGGATCAAGCGCTCGGGTGAAGAT 574780 28 100.0 32 ............................ AAGCCGGCGCCGGCTCCAGAGCGATCGCTTGC 574840 28 100.0 32 ............................ CCAAAAGTCTTGTAGATGTCCAGCAGCACCGT 574900 28 100.0 32 ............................ AAGGTGATATGCGTTATCTGGCGCAGAACTCG 574960 28 100.0 32 ............................ AATGGGGATGGCTGAGCGTGAACGATATCCGG 575020 28 100.0 32 ............................ GTCTGCCCCAGGCAGCGCGCCGGGCTCATAAA 575080 28 100.0 32 ............................ GCAGATCGTCGAGCAGATCGATTACGAGCTGA 575140 28 92.9 32 .C.............A............ AGGAGTACTTGCTGCTTTGGAGGTTTGGCCAT 575200 28 92.9 87 ...........C.C.............. CCAGTCCTTCAGCGTCCATCGGTGCTGTTCATCTCGATTGCCGAACAGGCAGGCAACACACAATCCATCATCAATCCATCGGCACCC 575315 27 85.7 0 ...-.........G........G...G. | T [575336] ========== ====== ====== ====== ============================ ======================================================================================= ================== 12 28 97.6 37 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GGCCCTGGGCCAGTTGCTGGCCATCGATTGGCTGACCGGCATGCGTGACCATGTAGAGATCGGCCAGCCCTGCTCGGTGCCGACGTCGGTGCAGCATCGCCATGTCAGCCGGGTACAGGTCGATAGCAGCCCGGCACGCCTGCGTCGCCGCCTGATCAAGCGCCATGGGCTGACCGAGGACCAAGCCCGCCAGCGCCTGCCCGACAGCGCGGCGAAACGTTGCGACCTGCCGTTCGCGGTGATGCGCAGCCATACCAGCCATCAGCTGTTCAACCTGTTCATCCGCCACGGCCCGCTGCTTGAACAACCACAGCCCGGCACGTTCAACGGCTATGGCCTGAGCTCCAGCGCGACAGTGCCCTGGTTCTGACCCTTTTTTTCGGGTGCAGTGGAGCGCTTTGTAAAATCAATGACTTACAAGGCGCTTCAAAAAAAGGGTGTACAGCAATTTTTAACAGTCTTTCTTTTGAAATTCAGGAAGTTATAGAGAAAGTGCTCTA # Right flank : ACTTGATGCACTAATCGCTGGCTGGCCTGGGGCTCCCGGGCCGGGCGCGTCTTTGTCACATCCCCTTCATCGGCGCTGGCTAAGGTGGCCTCTTTTGACCATGTCAGGGAGTCACCATGAGCGAGTTCAACCTCGGTCGTCGACGGATCATGCAAATCGCCGGGGCGGGGATGTTGCTGCCCAGCCTGGCGCCGGCGGTGATCGCCTCGGTCAAGGATCGACCCAAGCTCACCGATGGCGTGCAGTCCGGGGACTTGCAGGGCGATCGGGCGGTCATCTGGAGCCGCAGCGACCGCCCGGCGCGGATGGTGGTGGAGTGGGACACCCGCAGCATGTTCACCAACCCGCGACGCCTGGTCTCGCCGCTGGCCGATGCCCGCACCGACTTCACCGCCCGGGTGGACCTGAGCGGGCTGCCGGTCAACCAGGCGATTTTTTATCGGGTGACCTTCGAGGATGCCCGCACCGGGGTGGCCAGCGAACCCTGGTTCGGCCATTTG # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.38, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 26252-26994 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHUV01000006.1 Pseudomonas piscis strain MC042 Scaffold6_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================= ================== 26252 28 100.0 32 ............................ ATCTCAGAGTCAGTTGCCCCGAGTGCGCACAG 26312 28 100.0 32 ............................ TTCAGCAGCGAATGGATAGAGTTTCGAATGCT 26372 28 100.0 32 ............................ AGGACAATGGGATCAAGCGCTCGGGTGAAGAT 26432 28 100.0 32 ............................ AAGCCGGCGCCGGCTCCAGAGCGATCGCTTGC 26492 28 100.0 32 ............................ CCAAAAGTCTTGTAGATGTCCAGCAGCACCGT 26552 28 100.0 32 ............................ AAGGTGATATGCGTTATCTGGCGCAGAACTCG 26612 28 100.0 32 ............................ AATGGGGATGGCTGAGCGTGAACGATATCCGG 26672 28 100.0 32 ............................ GTCTGCCCCAGGCAGCGCGCCGGGCTCATAAA 26732 28 100.0 32 ............................ GCAGATCGTCGAGCAGATCGATTACGAGCTGA 26792 28 92.9 32 .C.............A............ AGGAGTACTTGCTGCTTTGGAGGTTTGGCCAT 26852 28 92.9 87 ...........C.C.............. CCAGTCCTTCAGCGTCCATCGGTGCTGTTCATCTCGATTGCCGAACAGGCAGGCAACACACAATCCATCATCAATCCATCGGCACCC 26967 27 85.7 0 ...-.........G........G...G. | T [26988] ========== ====== ====== ====== ============================ ======================================================================================= ================== 12 28 97.6 37 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GGCCCTGGGCCAGTTGCTGGCCATCGATTGGCTGACCGGCATGCGTGACCATGTAGAGATCGGCCAGCCCTGCTCGGTGCCGACGTCGGTGCAGCATCGCCATGTCAGCCGGGTACAGGTCGATAGCAGCCCGGCACGCCTGCGTCGCCGCCTGATCAAGCGCCATGGGCTGACCGAGGACCAAGCCCGCCAGCGCCTGCCCGACAGCGCGGCGAAACGTTGCGACCTGCCGTTCGCGGTGATGCGCAGCCATACCAGCCATCAGCTGTTCAACCTGTTCATCCGCCACGGCCCGCTGCTTGAACAACCACAGCCCGGCACGTTCAACGGCTATGGCCTGAGCTCCAGCGCGACAGTGCCCTGGTTCTGACCCTTTTTTTCGGGTGCAGTGGAGCGCTTTGTAAAATCAATGACTTACAAGGCGCTTCAAAAAAAGGGTGTACAGCAATTTTTAACAGTCTTTCTTTTGAAATTCAGGAAGTTATAGAGAAAGTGCTCTA # Right flank : ACTTGATGCACTAATCGCTGGCTGGCCTGGGGCTCCCGGGCCGGGCGCGTCTTTGTCACATCCCCTTCATCGGCGCTGGCTAAGGTGGCCTCTTTTGACCATGTCAGGGAGTCACCATGAGCGAGTTCAACCTCGGTCGTCGACGGATCATGCAAATCGCCGGGGCGGGGATGTTGCTGCCCAGCCTGGCGCCGGCGGTGATCGCCTCGGTCAAGGATCGACCCAAGCTCACCGATGGCGTGCAGTCCGGGGACTTGCAGGGCGATCGGGCGGTCATCTGGAGCCGCAGCGACCGCCCGGCGCGGATGGTGGTGGAGTGGGACACCCGCAGCATGTTCACCAACCCGCGACGCCTGGTCTCGCCGCTGGCCGATGCCCGCACCGACTTCACCGCCCGGGTGGACCTGAGCGGGCTGCCGGTCAACCAGGCGATTTTTTATCGGGTGACCTTCGAGGATGCCCGCACCGGGGTGGCCAGCGAACCCTGGTTCGGCCATTTG # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.38, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //